data_2NBF # _entry.id 2NBF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104657 RCSB ? ? 2NBF PDB pdb_00002nbf 10.2210/pdb2nbf/pdb 25974 BMRB ? ? D_1000104657 WWPDB ? ? # _pdbx_database_related.db_id 25974 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2NBF _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2016-02-04 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fizil, A.' 1 'Batta, G.' 2 # _citation.id primary _citation.title 'Calcium binding and the role of aspartic acids in the antifungal function of PAF' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sonderegger, C.' 1 ? primary 'Fizil, A.' 2 ? primary 'Burtscher, L.' 3 ? primary 'Komaromi, I.' 4 ? primary 'Czajlik, A.' 5 ? primary 'Munoz, A.' 6 ? primary 'Hegedus, N.' 7 ? primary 'Read, N.' 8 ? primary 'Batta, G.' 9 ? primary 'Marx, F.' 10 ? # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Antifungal protein' _entity.formula_weight 6263.099 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'UNP residue 38-92' _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code AKYTGKCTKSKNECKYKNDAGKDTFIKCPKFDNKKCTKDNNKCTVDTYNNAVDCD _entity_poly.pdbx_seq_one_letter_code_can AKYTGKCTKSKNECKYKNDAGKDTFIKCPKFDNKKCTKDNNKCTVDTYNNAVDCD _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 LYS n 1 3 TYR n 1 4 THR n 1 5 GLY n 1 6 LYS n 1 7 CYS n 1 8 THR n 1 9 LYS n 1 10 SER n 1 11 LYS n 1 12 ASN n 1 13 GLU n 1 14 CYS n 1 15 LYS n 1 16 TYR n 1 17 LYS n 1 18 ASN n 1 19 ASP n 1 20 ALA n 1 21 GLY n 1 22 LYS n 1 23 ASP n 1 24 THR n 1 25 PHE n 1 26 ILE n 1 27 LYS n 1 28 CYS n 1 29 PRO n 1 30 LYS n 1 31 PHE n 1 32 ASP n 1 33 ASN n 1 34 LYS n 1 35 LYS n 1 36 CYS n 1 37 THR n 1 38 LYS n 1 39 ASP n 1 40 ASN n 1 41 ASN n 1 42 LYS n 1 43 CYS n 1 44 THR n 1 45 VAL n 1 46 ASP n 1 47 THR n 1 48 TYR n 1 49 ASN n 1 50 ASN n 1 51 ALA n 1 52 VAL n 1 53 ASP n 1 54 CYS n 1 55 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene paf _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Penicillium chrysogenum' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 5076 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Penicillium chrysogenum' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 5076 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pSK275 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q01701_PENCH _struct_ref.pdbx_db_accession Q01701 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code AKYTGKCTKSKNECKYKNDAGKDTFIKCPKFDNKKCTKDNNKCTVDTYNNAVDCD _struct_ref.pdbx_align_begin 38 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2NBF _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 55 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q01701 _struct_ref_seq.db_align_beg 38 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 92 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 55 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC' 1 3 1 '2D 1H-1H NOESY' 1 4 1 '3D 1H-15N NOESY' 1 5 1 '3D 1H-15N TOCSY' 1 6 1 '2D 1H-15N HSQC' 1 7 1 '2D 1H-1H NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.02 _pdbx_nmr_exptl_sample_conditions.pH 5.8 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.temperature_units K # _pdbx_nmr_sample_details.contents ;1.0 mM [U-100% 15N] PAFD19S, 5 v/v [U-2H] D2O, 40 mM sodium chloride, 10 mM sodium phosphate, 0.04 % potassium phosphate, 10 mM Calcium ion, 95% H2O/5% D2O ; _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 500 Bruker AVANCE 1 'Bruker Avance' 700 Bruker DRX 2 'Bruker DRX' # _pdbx_nmr_refine.entry_id 2NBF _pdbx_nmr_refine.method 'simulated annealing, torsion angle dynamics' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 20 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2NBF _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2NBF _pdbx_nmr_representative.selection_criteria 'closest to the average' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bruker Biospin' collection TopSpin 2.1 1 'Bruker Biospin' processing TopSpin 2.1 2 'Guntert, Braun and Wuthrich' 'structure solution' CYANA 2.1 3 'Herrmann, Guntert and Wuthrich' 'chemical shift assignment' ATNOS-CANDID ? 4 'Herrmann, Guntert and Wuthrich' 'peak picking' ATNOS-CANDID ? 5 'Herrmann, Guntert and Wuthrich' 'structure solution' ATNOS-CANDID ? 6 CCPN 'chemical shift assignment' CCPN_Analysis 2.4 7 ? refinement CYANA ? 8 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2NBF _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2NBF _struct.title 'Structure of calcium-bound form of Penicillium antifungal protein (PAF)' _struct.pdbx_model_details 'closest to the average, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2NBF _struct_keywords.pdbx_keywords 'ANTIFUNGAL PROTEIN' _struct_keywords.text 'antifungal, PAF, calcium binding, ANTIFUNGAL PROTEIN' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 36 SG ? ? A CYS 7 A CYS 36 1_555 ? ? ? ? ? ? ? 1.978 ? ? disulf2 disulf ? ? A CYS 7 SG ? ? ? 1_555 A CYS 43 SG ? ? A CYS 7 A CYS 43 1_555 ? ? ? ? ? ? ? 2.763 ? ? disulf3 disulf ? ? A CYS 14 SG ? ? ? 1_555 A CYS 43 SG ? ? A CYS 14 A CYS 43 1_555 ? ? ? ? ? ? ? 1.997 ? ? disulf4 disulf ? ? A CYS 28 SG ? ? ? 1_555 A CYS 54 SG ? ? A CYS 28 A CYS 54 1_555 ? ? ? ? ? ? ? 1.912 ? ? disulf5 disulf ? ? A CYS 36 SG ? ? ? 1_555 A CYS 54 SG ? ? A CYS 36 A CYS 54 1_555 ? ? ? ? ? ? ? 2.481 ? ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TYR A 3 ? GLY A 5 ? TYR A 3 GLY A 5 A 2 CYS A 43 ? VAL A 45 ? CYS A 43 VAL A 45 B 1 CYS A 14 ? TYR A 16 ? CYS A 14 TYR A 16 B 2 THR A 24 ? ILE A 26 ? THR A 24 ILE A 26 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLY A 5 ? N GLY A 5 O CYS A 43 ? O CYS A 43 B 1 2 N TYR A 16 ? N TYR A 16 O THR A 24 ? O THR A 24 # _atom_sites.entry_id 2NBF _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 1 ALA ALA A . n A 1 2 LYS 2 2 2 LYS LYS A . n A 1 3 TYR 3 3 3 TYR TYR A . n A 1 4 THR 4 4 4 THR THR A . n A 1 5 GLY 5 5 5 GLY GLY A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 CYS 7 7 7 CYS CYS A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 LYS 9 9 9 LYS LYS A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 LYS 11 11 11 LYS LYS A . n A 1 12 ASN 12 12 12 ASN ASN A . n A 1 13 GLU 13 13 13 GLU GLU A . n A 1 14 CYS 14 14 14 CYS CYS A . n A 1 15 LYS 15 15 15 LYS LYS A . n A 1 16 TYR 16 16 16 TYR TYR A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 ASP 19 19 19 ASP ASP A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 GLY 21 21 21 GLY GLY A . n A 1 22 LYS 22 22 22 LYS LYS A . n A 1 23 ASP 23 23 23 ASP ASP A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 PHE 25 25 25 PHE PHE A . n A 1 26 ILE 26 26 26 ILE ILE A . n A 1 27 LYS 27 27 27 LYS LYS A . n A 1 28 CYS 28 28 28 CYS CYS A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 LYS 30 30 30 LYS LYS A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 ASP 32 32 32 ASP ASP A . n A 1 33 ASN 33 33 33 ASN ASN A . n A 1 34 LYS 34 34 34 LYS LYS A . n A 1 35 LYS 35 35 35 LYS LYS A . n A 1 36 CYS 36 36 36 CYS CYS A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 ASP 39 39 39 ASP ASP A . n A 1 40 ASN 40 40 40 ASN ASN A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 LYS 42 42 42 LYS LYS A . n A 1 43 CYS 43 43 43 CYS CYS A . n A 1 44 THR 44 44 44 THR THR A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 ASP 46 46 46 ASP ASP A . n A 1 47 THR 47 47 47 THR THR A . n A 1 48 TYR 48 48 48 TYR TYR A . n A 1 49 ASN 49 49 49 ASN ASN A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 ALA 51 51 51 ALA ALA A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 ASP 53 53 53 ASP ASP A . n A 1 54 CYS 54 54 54 CYS CYS A . n A 1 55 ASP 55 55 55 ASP ASP A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-02-08 2 'Structure model' 1 1 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' database_2 2 2 'Structure model' pdbx_database_status 3 2 'Structure model' pdbx_nmr_software 4 2 'Structure model' pdbx_nmr_spectrometer # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_database_status.status_code_nmr_data' 4 2 'Structure model' '_pdbx_nmr_software.name' 5 2 'Structure model' '_pdbx_nmr_spectrometer.model' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id PAFD19S-1 1.0 ? mM '[U-100% 15N]' 1 D2O-2 5 ? v/v '[U-2H]' 1 'sodium chloride-3' 40 ? mM ? 1 'sodium phosphate-4' 10 ? mM ? 1 'potassium phosphate-5' 0.04 ? % ? 1 'Calcium ion-6' 10 ? mM ? 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2NBF _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 808 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count ? _pdbx_nmr_constraints.NOE_medium_range_total_count ? _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 2 SG A CYS 7 ? ? SG A CYS 14 ? ? 1.51 2 3 SG A CYS 7 ? ? SG A CYS 14 ? ? 1.88 3 3 SG A CYS 28 ? ? SG A CYS 36 ? ? 2.01 4 5 SG A CYS 7 ? ? SG A CYS 14 ? ? 1.51 5 8 SG A CYS 7 ? ? SG A CYS 14 ? ? 1.53 6 11 SG A CYS 7 ? ? SG A CYS 14 ? ? 1.84 7 13 SG A CYS 7 ? ? SG A CYS 14 ? ? 1.52 8 18 SG A CYS 7 ? ? SG A CYS 14 ? ? 1.81 9 19 SG A CYS 7 ? ? SG A CYS 14 ? ? 1.57 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 2 ? ? 63.37 105.37 2 1 CYS A 7 ? ? -110.99 -168.91 3 1 LYS A 11 ? ? -141.07 12.88 4 1 ASN A 12 ? ? 64.11 114.10 5 1 GLU A 13 ? ? -173.03 96.62 6 1 TYR A 16 ? ? -170.58 -170.33 7 1 ALA A 20 ? ? -178.48 -59.14 8 1 ASP A 23 ? ? -59.20 97.51 9 1 CYS A 28 ? ? -115.53 79.23 10 1 ASN A 49 ? ? -149.28 22.72 11 1 ASN A 50 ? ? 51.77 88.47 12 1 ALA A 51 ? ? -169.61 104.20 13 1 ASP A 53 ? ? -112.37 53.87 14 2 CYS A 7 ? ? -107.91 -169.20 15 2 SER A 10 ? ? -49.74 -74.69 16 2 ASN A 12 ? ? 62.91 110.05 17 2 GLU A 13 ? ? -169.29 95.69 18 2 ALA A 20 ? ? -179.40 -42.42 19 2 ASP A 23 ? ? -61.41 94.47 20 2 LYS A 27 ? ? -61.91 -165.88 21 2 CYS A 28 ? ? -110.17 79.89 22 2 ASN A 49 ? ? -156.37 23.51 23 2 ASN A 50 ? ? 57.35 94.93 24 2 ALA A 51 ? ? -170.12 116.55 25 2 ASP A 53 ? ? -100.96 68.52 26 3 LYS A 2 ? ? 63.85 158.87 27 3 LYS A 11 ? ? -154.22 21.54 28 3 ASN A 12 ? ? 64.82 115.28 29 3 GLU A 13 ? ? -179.51 107.31 30 3 TYR A 16 ? ? -165.81 -169.64 31 3 ALA A 20 ? ? -178.41 -43.16 32 3 ASP A 23 ? ? -63.52 93.55 33 3 LYS A 27 ? ? -56.04 -179.37 34 3 THR A 37 ? ? -152.12 19.73 35 3 THR A 47 ? ? -91.54 44.07 36 3 ASN A 49 ? ? -164.50 29.36 37 3 ASN A 50 ? ? 53.76 84.54 38 3 ASP A 53 ? ? -97.64 52.52 39 4 LYS A 2 ? ? -176.67 147.50 40 4 CYS A 7 ? ? -106.91 -168.56 41 4 SER A 10 ? ? -49.72 -74.95 42 4 ASN A 12 ? ? 61.90 107.26 43 4 GLU A 13 ? ? -166.99 96.97 44 4 ALA A 20 ? ? 72.29 32.79 45 4 ASP A 23 ? ? -63.38 93.19 46 4 LYS A 27 ? ? -59.18 -173.34 47 4 ASN A 41 ? ? -78.43 -169.51 48 4 ASN A 49 ? ? -150.44 19.38 49 4 ASN A 50 ? ? 51.31 87.09 50 4 ALA A 51 ? ? -171.69 133.56 51 4 ASP A 53 ? ? -105.24 58.74 52 5 CYS A 7 ? ? -107.24 -168.43 53 5 SER A 10 ? ? -49.03 -74.77 54 5 ASN A 12 ? ? 65.24 118.04 55 5 GLU A 13 ? ? -178.69 96.43 56 5 ASP A 19 ? ? 71.92 -69.12 57 5 ALA A 20 ? ? -165.03 27.33 58 5 CYS A 28 ? ? -49.67 107.94 59 5 LYS A 35 ? ? -67.31 -169.33 60 5 THR A 47 ? ? -91.00 45.83 61 5 ASN A 49 ? ? -154.81 26.58 62 5 ASN A 50 ? ? 52.04 87.24 63 5 ALA A 51 ? ? -161.85 107.82 64 6 LYS A 2 ? ? 63.37 105.60 65 6 CYS A 7 ? ? -114.97 -168.06 66 6 LYS A 11 ? ? -151.34 20.73 67 6 ASN A 12 ? ? 63.27 111.18 68 6 GLU A 13 ? ? -162.41 85.16 69 6 ASN A 18 ? ? -120.18 -74.72 70 6 ASP A 19 ? ? -56.88 -74.97 71 6 ALA A 20 ? ? -161.80 53.92 72 6 LYS A 22 ? ? -52.14 105.41 73 6 ASP A 23 ? ? -56.42 99.80 74 6 LYS A 27 ? ? -59.56 -171.46 75 6 ASN A 41 ? ? -75.02 -169.82 76 6 ASN A 50 ? ? 51.57 71.75 77 7 CYS A 7 ? ? -107.71 -169.21 78 7 SER A 10 ? ? -52.14 -76.17 79 7 ASN A 12 ? ? 66.73 123.00 80 7 GLU A 13 ? ? 179.36 93.28 81 7 TYR A 16 ? ? -174.92 -169.34 82 7 ASP A 19 ? ? 70.86 -71.39 83 7 ALA A 20 ? ? -163.84 32.98 84 7 LYS A 27 ? ? -60.26 -169.01 85 7 CYS A 28 ? ? -112.30 74.70 86 7 ASN A 41 ? ? -78.05 -168.87 87 7 ASN A 50 ? ? 51.57 88.56 88 8 SER A 10 ? ? -49.78 -75.55 89 8 ASP A 19 ? ? 70.46 -72.21 90 8 ALA A 20 ? ? -161.13 25.17 91 8 LYS A 27 ? ? -61.37 -169.64 92 8 CYS A 28 ? ? -112.40 77.15 93 8 ASN A 50 ? ? 63.46 80.80 94 8 ALA A 51 ? ? -178.63 -173.59 95 8 ASP A 53 ? ? -111.23 72.37 96 9 CYS A 7 ? ? -111.78 -168.08 97 9 SER A 10 ? ? -47.24 -75.06 98 9 ASN A 12 ? ? 65.60 117.70 99 9 GLU A 13 ? ? -177.15 95.78 100 9 ASP A 19 ? ? 70.10 -72.71 101 9 ALA A 20 ? ? -159.86 24.52 102 9 LYS A 27 ? ? -61.58 -168.70 103 9 CYS A 28 ? ? -111.51 78.38 104 9 CYS A 36 ? ? -54.97 107.98 105 9 ASN A 41 ? ? -79.06 -169.17 106 9 ASN A 50 ? ? 64.24 81.53 107 10 CYS A 7 ? ? -108.72 -168.75 108 10 SER A 10 ? ? -50.38 -76.82 109 10 ASN A 12 ? ? 66.73 125.82 110 10 GLU A 13 ? ? -177.69 85.92 111 10 TYR A 16 ? ? -170.40 -169.98 112 10 ASN A 18 ? ? -131.26 -75.81 113 10 ASP A 19 ? ? -55.06 -75.67 114 10 ALA A 20 ? ? -149.96 -39.94 115 10 ASP A 23 ? ? -60.47 95.84 116 10 LYS A 27 ? ? -55.12 178.54 117 10 LYS A 35 ? ? -75.15 -169.64 118 10 ASN A 50 ? ? 51.82 70.62 119 10 ASP A 53 ? ? -111.34 53.78 120 11 CYS A 7 ? ? -107.60 -168.94 121 11 SER A 10 ? ? -49.11 -74.63 122 11 ASN A 12 ? ? 65.13 117.71 123 11 GLU A 13 ? ? -178.14 94.23 124 11 TYR A 16 ? ? -163.59 -169.54 125 11 ASP A 19 ? ? -97.99 32.48 126 11 ALA A 20 ? ? 73.31 47.11 127 11 LYS A 22 ? ? -51.80 103.18 128 11 CYS A 28 ? ? -111.51 78.40 129 11 LYS A 34 ? ? -153.45 22.83 130 11 ASN A 50 ? ? 51.39 83.82 131 11 ASP A 53 ? ? -95.86 55.75 132 12 CYS A 7 ? ? -100.49 -169.73 133 12 LYS A 11 ? ? -142.20 23.41 134 12 ASN A 12 ? ? 65.80 120.44 135 12 GLU A 13 ? ? 179.98 102.96 136 12 ASP A 19 ? ? -75.42 -72.82 137 12 LYS A 22 ? ? -58.46 100.33 138 12 ASP A 23 ? ? -61.67 94.39 139 12 LYS A 27 ? ? -56.05 177.32 140 12 LYS A 34 ? ? -153.53 26.38 141 12 LYS A 35 ? ? -51.74 170.27 142 12 THR A 37 ? ? -140.12 15.03 143 12 ASN A 49 ? ? -153.35 26.79 144 12 ASN A 50 ? ? 51.77 81.92 145 12 ALA A 51 ? ? -160.24 93.79 146 12 ASP A 53 ? ? -108.44 53.87 147 13 CYS A 7 ? ? -115.96 -168.39 148 13 SER A 10 ? ? -49.46 -74.95 149 13 ASN A 12 ? ? 66.04 120.64 150 13 GLU A 13 ? ? -179.94 93.49 151 13 ASN A 18 ? ? -130.48 -39.71 152 13 ASP A 19 ? ? -95.67 30.65 153 13 ALA A 20 ? ? 72.66 48.38 154 13 LYS A 22 ? ? -50.75 103.65 155 13 ASP A 23 ? ? -64.25 94.23 156 13 LYS A 27 ? ? -68.55 -168.60 157 13 CYS A 28 ? ? -114.36 70.29 158 13 LYS A 35 ? ? -49.44 168.82 159 13 ASN A 49 ? ? -140.64 22.32 160 13 ASN A 50 ? ? 51.67 83.78 161 13 ALA A 51 ? ? -165.13 109.74 162 13 ASP A 53 ? ? -102.08 56.45 163 14 CYS A 7 ? ? -109.69 -169.17 164 14 SER A 10 ? ? -50.39 -74.99 165 14 ASN A 12 ? ? 63.24 111.02 166 14 GLU A 13 ? ? -173.40 101.08 167 14 ASN A 18 ? ? -137.19 -41.27 168 14 ASP A 19 ? ? -95.50 30.28 169 14 ALA A 20 ? ? 73.25 48.48 170 14 LYS A 22 ? ? -50.83 103.66 171 14 ASP A 23 ? ? -63.75 98.21 172 14 LYS A 27 ? ? -59.76 -169.75 173 14 CYS A 28 ? ? -110.96 79.28 174 14 PHE A 31 ? ? -105.31 -169.94 175 14 ASP A 32 ? ? -131.23 -39.76 176 14 ASN A 41 ? ? -79.08 -169.77 177 14 ASN A 49 ? ? -141.79 21.69 178 14 ASN A 50 ? ? 57.53 95.49 179 14 ALA A 51 ? ? -172.51 128.17 180 14 ASP A 53 ? ? -111.73 64.07 181 15 LYS A 11 ? ? -144.09 14.03 182 15 ASN A 12 ? ? 64.76 117.82 183 15 GLU A 13 ? ? 179.46 109.72 184 15 TYR A 16 ? ? -174.54 -169.52 185 15 ASN A 18 ? ? -116.41 -71.87 186 15 ASP A 19 ? ? -72.90 -74.91 187 15 LYS A 22 ? ? -56.48 105.05 188 15 ASP A 23 ? ? -61.77 94.13 189 15 LYS A 27 ? ? -54.54 175.60 190 15 CYS A 28 ? ? -111.71 77.38 191 15 LYS A 35 ? ? -66.27 -174.48 192 15 THR A 37 ? ? -145.14 14.52 193 15 ASN A 41 ? ? -67.57 -173.52 194 15 THR A 47 ? ? -89.98 46.10 195 15 ASN A 49 ? ? -154.99 24.21 196 15 ASN A 50 ? ? 51.49 83.52 197 15 ASP A 53 ? ? -115.49 56.00 198 16 LYS A 2 ? ? 63.27 150.73 199 16 CYS A 7 ? ? -110.73 -168.88 200 16 ASN A 12 ? ? 62.65 109.48 201 16 GLU A 13 ? ? -169.68 92.60 202 16 TYR A 16 ? ? -172.56 -171.75 203 16 ALA A 20 ? ? -178.53 -48.63 204 16 ASP A 23 ? ? -63.55 94.35 205 16 LYS A 27 ? ? -55.15 179.05 206 16 CYS A 28 ? ? -110.94 76.78 207 16 CYS A 36 ? ? -51.23 107.10 208 16 ASN A 41 ? ? -78.07 -169.67 209 16 THR A 47 ? ? -92.04 40.34 210 16 ASN A 49 ? ? -150.55 19.08 211 16 ASN A 50 ? ? 57.87 96.83 212 16 ALA A 51 ? ? -175.96 133.95 213 16 ASP A 53 ? ? -108.29 70.40 214 17 CYS A 7 ? ? -121.40 -169.86 215 17 SER A 10 ? ? -65.22 86.67 216 17 ASN A 12 ? ? 65.05 135.86 217 17 GLU A 13 ? ? -178.33 93.04 218 17 ASP A 19 ? ? 69.61 -73.74 219 17 ALA A 20 ? ? -165.06 27.38 220 17 LYS A 27 ? ? -60.72 -168.28 221 17 LYS A 34 ? ? -141.97 20.01 222 17 ASN A 41 ? ? -78.76 -168.88 223 17 ASN A 50 ? ? 51.61 78.70 224 18 CYS A 7 ? ? -107.90 -168.47 225 18 SER A 10 ? ? -47.97 -74.61 226 18 ASN A 12 ? ? 64.53 115.42 227 18 GLU A 13 ? ? -170.39 92.16 228 18 ASN A 18 ? ? -121.96 -71.61 229 18 ASP A 19 ? ? -73.56 -74.97 230 18 LYS A 22 ? ? -58.27 100.74 231 18 ASP A 23 ? ? -63.71 92.29 232 18 LYS A 27 ? ? -60.91 -166.69 233 18 LYS A 35 ? ? -57.31 -178.73 234 18 ASN A 49 ? ? -150.56 32.03 235 18 ASN A 50 ? ? 51.87 79.04 236 18 ASP A 53 ? ? -105.92 57.18 237 19 CYS A 7 ? ? -109.84 -169.32 238 19 SER A 10 ? ? -46.55 -75.77 239 19 ASN A 12 ? ? 65.73 119.04 240 19 GLU A 13 ? ? -179.84 98.25 241 19 TYR A 16 ? ? -168.77 -169.92 242 19 ASP A 19 ? ? -96.37 34.55 243 19 ILE A 26 ? ? -177.57 122.95 244 19 CYS A 28 ? ? -48.79 107.56 245 19 LYS A 35 ? ? -60.69 -172.59 246 19 ASN A 41 ? ? -70.79 -169.94 247 19 ASN A 49 ? ? -142.60 24.90 248 19 ASN A 50 ? ? 51.79 87.60 249 19 ALA A 51 ? ? -168.04 105.63 250 20 CYS A 7 ? ? -106.42 -168.03 251 20 SER A 10 ? ? -49.98 -75.83 252 20 ASN A 12 ? ? 62.25 108.58 253 20 GLU A 13 ? ? -175.69 110.73 254 20 ASN A 18 ? ? -114.68 -74.56 255 20 ASP A 19 ? ? -57.15 -75.24 256 20 ALA A 20 ? ? -151.73 24.88 257 20 LYS A 22 ? ? -52.59 102.74 258 20 ASP A 23 ? ? -59.20 97.44 259 20 LYS A 27 ? ? -54.77 178.14 260 20 CYS A 28 ? ? -110.75 78.11 261 20 LYS A 35 ? ? -57.92 -178.43 262 20 ASN A 41 ? ? -75.16 -167.56 263 20 THR A 47 ? ? -93.35 39.59 264 20 ASN A 49 ? ? -144.25 16.25 265 20 ASN A 50 ? ? 51.36 87.02 266 20 ALA A 51 ? ? -163.98 114.75 267 20 ASP A 53 ? ? -100.29 55.66 #