data_2NBK # _entry.id 2NBK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.292 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id RCSB104662 RCSB 2NBK PDB 25979 BMRB D_1000104662 WWPDB # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2018-04-04 _pdbx_database_PDB_obs_spr.pdb_id 6CO4 _pdbx_database_PDB_obs_spr.replace_pdb_id 2NBK _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_id 25979 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2NBK _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2016-02-25 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code OBS _pdbx_database_status.status_code_mr OBS _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs OBS _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Lu, X.' 1 'Walters, K.' 2 # _citation.id primary _citation.title 'Structure of the Rpn13-Rpn2 complex provides insights for Rpn13 and Uch37 as anticancer targets.' _citation.journal_abbrev 'Nat Commun' _citation.journal_volume 8 _citation.page_first 15540 _citation.page_last 15540 _citation.year 2017 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2041-1723 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 28598414 _citation.pdbx_database_id_DOI 10.1038/ncomms15540 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Lu, X.' 1 primary 'Nowicka, U.' 2 primary 'Sridharan, V.' 3 primary 'Liu, F.' 4 primary 'Randles, L.' 5 primary 'Hymel, D.' 6 primary 'Dyba, M.' 7 primary 'Tarasov, S.G.' 8 primary 'Tarasova, N.I.' 9 primary 'Zhao, X.Z.' 10 primary 'Hamazaki, J.' 11 primary 'Murata, S.' 12 primary 'Burke, T.R.' 13 primary 'Walters, K.J.' 14 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Proteasomal ubiquitin receptor ADRM1' 13103.945 1 ? ? 'UNP residue 20-130' ? 2 polymer man '26S proteasome non-ATPase regulatory subunit 1' 1704.739 1 ? ? 'UNP residues 940-953' ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 ;110 kDa cell membrane glycoprotein, Gp110, Adhesion-regulating molecule 1, ARM-1, Proteasome regulatory particle non-ATPase 13, hRpn13, Rpn13 homolog ; 2 '26S proteasome regulatory subunit RPN2, 26S proteasome regulatory subunit S1, 26S proteasome subunit p112' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no ;NKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFK AGSKRLFFWMQEPKTDQDEEHCRKVNEYLNN ; ;NKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFK AGSKRLFFWMQEPKTDQDEEHCRKVNEYLNN ; A ? 2 'polypeptide(L)' no no QEPEPPEPFEYIDD QEPEPPEPFEYIDD B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ASN n 1 2 LYS n 1 3 TYR n 1 4 LEU n 1 5 VAL n 1 6 GLU n 1 7 PHE n 1 8 ARG n 1 9 ALA n 1 10 GLY n 1 11 LYS n 1 12 MET n 1 13 SER n 1 14 LEU n 1 15 LYS n 1 16 GLY n 1 17 THR n 1 18 THR n 1 19 VAL n 1 20 THR n 1 21 PRO n 1 22 ASP n 1 23 LYS n 1 24 ARG n 1 25 LYS n 1 26 GLY n 1 27 LEU n 1 28 VAL n 1 29 TYR n 1 30 ILE n 1 31 GLN n 1 32 GLN n 1 33 THR n 1 34 ASP n 1 35 ASP n 1 36 SER n 1 37 LEU n 1 38 ILE n 1 39 HIS n 1 40 PHE n 1 41 CYS n 1 42 TRP n 1 43 LYS n 1 44 ASP n 1 45 ARG n 1 46 THR n 1 47 SER n 1 48 GLY n 1 49 ASN n 1 50 VAL n 1 51 GLU n 1 52 ASP n 1 53 ASP n 1 54 LEU n 1 55 ILE n 1 56 ILE n 1 57 PHE n 1 58 PRO n 1 59 ASP n 1 60 ASP n 1 61 CYS n 1 62 GLU n 1 63 PHE n 1 64 LYS n 1 65 ARG n 1 66 VAL n 1 67 PRO n 1 68 GLN n 1 69 CYS n 1 70 PRO n 1 71 SER n 1 72 GLY n 1 73 ARG n 1 74 VAL n 1 75 TYR n 1 76 VAL n 1 77 LEU n 1 78 LYS n 1 79 PHE n 1 80 LYS n 1 81 ALA n 1 82 GLY n 1 83 SER n 1 84 LYS n 1 85 ARG n 1 86 LEU n 1 87 PHE n 1 88 PHE n 1 89 TRP n 1 90 MET n 1 91 GLN n 1 92 GLU n 1 93 PRO n 1 94 LYS n 1 95 THR n 1 96 ASP n 1 97 GLN n 1 98 ASP n 1 99 GLU n 1 100 GLU n 1 101 HIS n 1 102 CYS n 1 103 ARG n 1 104 LYS n 1 105 VAL n 1 106 ASN n 1 107 GLU n 1 108 TYR n 1 109 LEU n 1 110 ASN n 1 111 ASN n 2 1 GLN n 2 2 GLU n 2 3 PRO n 2 4 GLU n 2 5 PRO n 2 6 PRO n 2 7 GLU n 2 8 PRO n 2 9 PHE n 2 10 GLU n 2 11 TYR n 2 12 ILE n 2 13 ASP n 2 14 ASP n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 1 sample ? ? ? human ? 'ADRM1, GP110' ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? pRSET ? ? ? ? ? 2 1 sample ? ? ? human ? PSMD1 ? ? ? ? ? ? 'Homo sapiens' 9606 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? pRSET ? ? ? ? ? # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP ADRM1_HUMAN Q16186 1 ;NKYLVEFRAGKMSLKGTTVTPDKRKGLVYIQQTDDSLIHFCWKDRTSGNVEDDLIIFPDDCEFKRVPQCPSGRVYVLKFK AGSKRLFFWMQEPKTDQDEEHCRKVNEYLNN ; 20 ? 2 UNP PSMD1_HUMAN Q99460 2 QEPEPPEPFEYIDD 940 ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2NBK A 1 ? 111 ? Q16186 20 ? 130 ? 20 130 2 2 2NBK B 1 ? 14 ? Q99460 940 ? 953 ? 940 953 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '3D HNCACB' 1 3 1 '3D CBCA(CO)NH' 1 4 1 '3D HNCO' 1 5 1 '3D 1H-15N NOESY' 1 6 2 '3D 1H-13C NOESY aliphatic' 1 7 2 '2D 1H-13C HSQC aliphatic' 1 8 2 '2D 1H-13C HSQC aromatic' 1 9 1 '3D HN(CA)CO' 1 10 2 '3D half-filtered NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 0.05 _pdbx_nmr_exptl_sample_conditions.pH 6.5 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 298.2 # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '20 mM sodium phosphate, 2 mM DTT, 50 mM sodium chloride, 0.1 % sodium azide, 90% H2O/10% D2O' 1 '90% H2O/10% D2O' '20 mM potassium phosphate, 50 mM sodium chloride, 0.1 % sodium azide, 2 mM DTT, 100% D2O' 2 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker Avance 1 'Bruker Avance' 600 Bruker Avance 2 'Bruker Avance' 700 Bruker Avance 3 'Bruker Avance' 850 Bruker Avance 4 'Bruker Avance' # _pdbx_nmr_refine.entry_id 2NBK _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 200 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2NBK _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2NBK _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Bartels et al.' 'chemical shift assignment' XEASY ? 1 'Bartels et al.' 'data analysis' XEASY ? 2 'Bartels et al.' 'peak picking' XEASY ? 3 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe ? 4 'Schwieters, Kuszewski, Tjandra and Clore' refinement X-PLOR_NIH ? 5 'Bruker Biospin' collection TOPSPIN ? 6 'Cornilescu, Delaglio and Bax' 'data analysis' TALOS ? 7 'Laskowski and MacArthur' 'data analysis' ProcheckNMR ? 8 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2NBK _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2NBK _struct.title 'Protein complex' _struct.pdbx_descriptor 'Proteasomal ubiquitin receptor ADRM1, 26S proteasome non-ATPase regulatory subunit 1' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2NBK _struct_keywords.pdbx_keywords 'PROTEIN BINDING' _struct_keywords.text 'protein binding' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 PRO A 93 ? ASP A 96 ? PRO A 112 ASP A 115 5 ? 4 HELX_P HELX_P2 2 GLN A 97 ? ASN A 110 ? GLN A 116 ASN A 129 1 ? 14 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 18 ? PRO A 21 ? THR A 37 PRO A 40 A 2 VAL A 5 ? LYS A 15 ? VAL A 24 LYS A 34 A 3 GLY A 26 ? GLN A 32 ? GLY A 45 GLN A 51 A 4 ILE A 38 ? ASP A 44 ? ILE A 57 ASP A 63 A 5 VAL A 50 ? ILE A 56 ? VAL A 69 ILE A 75 B 1 THR A 18 ? PRO A 21 ? THR A 37 PRO A 40 B 2 VAL A 5 ? LYS A 15 ? VAL A 24 LYS A 34 B 3 ARG A 85 ? TRP A 89 ? ARG A 104 TRP A 108 B 4 GLY A 72 ? LYS A 78 ? GLY A 91 LYS A 97 B 5 GLU A 62 ? CYS A 69 ? GLU A 81 CYS A 88 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O THR A 20 ? O THR A 39 N SER A 13 ? N SER A 32 A 2 3 N VAL A 5 ? N VAL A 24 O ILE A 30 ? O ILE A 49 A 3 4 N GLN A 31 ? N GLN A 50 O HIS A 39 ? O HIS A 58 A 4 5 N TRP A 42 ? N TRP A 61 O ASP A 52 ? O ASP A 71 B 1 2 O THR A 20 ? O THR A 39 N SER A 13 ? N SER A 32 B 2 3 N GLY A 10 ? N GLY A 29 O TRP A 89 ? O TRP A 108 B 3 4 O LEU A 86 ? O LEU A 105 N LEU A 77 ? N LEU A 96 B 4 5 O LYS A 78 ? O LYS A 97 N GLU A 62 ? N GLU A 81 # _atom_sites.entry_id 2NBK _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ASN 1 20 20 ASN ASN A . n A 1 2 LYS 2 21 21 LYS LYS A . n A 1 3 TYR 3 22 22 TYR TYR A . n A 1 4 LEU 4 23 23 LEU LEU A . n A 1 5 VAL 5 24 24 VAL VAL A . n A 1 6 GLU 6 25 25 GLU GLU A . n A 1 7 PHE 7 26 26 PHE PHE A . n A 1 8 ARG 8 27 27 ARG ARG A . n A 1 9 ALA 9 28 28 ALA ALA A . n A 1 10 GLY 10 29 29 GLY GLY A . n A 1 11 LYS 11 30 30 LYS LYS A . n A 1 12 MET 12 31 31 MET MET A . n A 1 13 SER 13 32 32 SER SER A . n A 1 14 LEU 14 33 33 LEU LEU A . n A 1 15 LYS 15 34 34 LYS LYS A . n A 1 16 GLY 16 35 35 GLY GLY A . n A 1 17 THR 17 36 36 THR THR A . n A 1 18 THR 18 37 37 THR THR A . n A 1 19 VAL 19 38 38 VAL VAL A . n A 1 20 THR 20 39 39 THR THR A . n A 1 21 PRO 21 40 40 PRO PRO A . n A 1 22 ASP 22 41 41 ASP ASP A . n A 1 23 LYS 23 42 42 LYS LYS A . n A 1 24 ARG 24 43 43 ARG ARG A . n A 1 25 LYS 25 44 44 LYS LYS A . n A 1 26 GLY 26 45 45 GLY GLY A . n A 1 27 LEU 27 46 46 LEU LEU A . n A 1 28 VAL 28 47 47 VAL VAL A . n A 1 29 TYR 29 48 48 TYR TYR A . n A 1 30 ILE 30 49 49 ILE ILE A . n A 1 31 GLN 31 50 50 GLN GLN A . n A 1 32 GLN 32 51 51 GLN GLN A . n A 1 33 THR 33 52 52 THR THR A . n A 1 34 ASP 34 53 53 ASP ASP A . n A 1 35 ASP 35 54 54 ASP ASP A . n A 1 36 SER 36 55 55 SER SER A . n A 1 37 LEU 37 56 56 LEU LEU A . n A 1 38 ILE 38 57 57 ILE ILE A . n A 1 39 HIS 39 58 58 HIS HIS A . n A 1 40 PHE 40 59 59 PHE PHE A . n A 1 41 CYS 41 60 60 CYS CYS A . n A 1 42 TRP 42 61 61 TRP TRP A . n A 1 43 LYS 43 62 62 LYS LYS A . n A 1 44 ASP 44 63 63 ASP ASP A . n A 1 45 ARG 45 64 64 ARG ARG A . n A 1 46 THR 46 65 65 THR THR A . n A 1 47 SER 47 66 66 SER SER A . n A 1 48 GLY 48 67 67 GLY GLY A . n A 1 49 ASN 49 68 68 ASN ASN A . n A 1 50 VAL 50 69 69 VAL VAL A . n A 1 51 GLU 51 70 70 GLU GLU A . n A 1 52 ASP 52 71 71 ASP ASP A . n A 1 53 ASP 53 72 72 ASP ASP A . n A 1 54 LEU 54 73 73 LEU LEU A . n A 1 55 ILE 55 74 74 ILE ILE A . n A 1 56 ILE 56 75 75 ILE ILE A . n A 1 57 PHE 57 76 76 PHE PHE A . n A 1 58 PRO 58 77 77 PRO PRO A . n A 1 59 ASP 59 78 78 ASP ASP A . n A 1 60 ASP 60 79 79 ASP ASP A . n A 1 61 CYS 61 80 80 CYS CYS A . n A 1 62 GLU 62 81 81 GLU GLU A . n A 1 63 PHE 63 82 82 PHE PHE A . n A 1 64 LYS 64 83 83 LYS LYS A . n A 1 65 ARG 65 84 84 ARG ARG A . n A 1 66 VAL 66 85 85 VAL VAL A . n A 1 67 PRO 67 86 86 PRO PRO A . n A 1 68 GLN 68 87 87 GLN GLN A . n A 1 69 CYS 69 88 88 CYS CYS A . n A 1 70 PRO 70 89 89 PRO PRO A . n A 1 71 SER 71 90 90 SER SER A . n A 1 72 GLY 72 91 91 GLY GLY A . n A 1 73 ARG 73 92 92 ARG ARG A . n A 1 74 VAL 74 93 93 VAL VAL A . n A 1 75 TYR 75 94 94 TYR TYR A . n A 1 76 VAL 76 95 95 VAL VAL A . n A 1 77 LEU 77 96 96 LEU LEU A . n A 1 78 LYS 78 97 97 LYS LYS A . n A 1 79 PHE 79 98 98 PHE PHE A . n A 1 80 LYS 80 99 99 LYS LYS A . n A 1 81 ALA 81 100 100 ALA ALA A . n A 1 82 GLY 82 101 101 GLY GLY A . n A 1 83 SER 83 102 102 SER SER A . n A 1 84 LYS 84 103 103 LYS LYS A . n A 1 85 ARG 85 104 104 ARG ARG A . n A 1 86 LEU 86 105 105 LEU LEU A . n A 1 87 PHE 87 106 106 PHE PHE A . n A 1 88 PHE 88 107 107 PHE PHE A . n A 1 89 TRP 89 108 108 TRP TRP A . n A 1 90 MET 90 109 109 MET MET A . n A 1 91 GLN 91 110 110 GLN GLN A . n A 1 92 GLU 92 111 111 GLU GLU A . n A 1 93 PRO 93 112 112 PRO PRO A . n A 1 94 LYS 94 113 113 LYS LYS A . n A 1 95 THR 95 114 114 THR THR A . n A 1 96 ASP 96 115 115 ASP ASP A . n A 1 97 GLN 97 116 116 GLN GLN A . n A 1 98 ASP 98 117 117 ASP ASP A . n A 1 99 GLU 99 118 118 GLU GLU A . n A 1 100 GLU 100 119 119 GLU GLU A . n A 1 101 HIS 101 120 120 HIS HIS A . n A 1 102 CYS 102 121 121 CYS CYS A . n A 1 103 ARG 103 122 122 ARG ARG A . n A 1 104 LYS 104 123 123 LYS LYS A . n A 1 105 VAL 105 124 124 VAL VAL A . n A 1 106 ASN 106 125 125 ASN ASN A . n A 1 107 GLU 107 126 126 GLU GLU A . n A 1 108 TYR 108 127 127 TYR TYR A . n A 1 109 LEU 109 128 128 LEU LEU A . n A 1 110 ASN 110 129 129 ASN ASN A . n A 1 111 ASN 111 130 130 ASN ASN A . n B 2 1 GLN 1 940 940 GLN GLN B . n B 2 2 GLU 2 941 941 GLU GLU B . n B 2 3 PRO 3 942 942 PRO PRO B . n B 2 4 GLU 4 943 943 GLU GLU B . n B 2 5 PRO 5 944 944 PRO PRO B . n B 2 6 PRO 6 945 945 PRO PRO B . n B 2 7 GLU 7 946 946 GLU GLU B . n B 2 8 PRO 8 947 947 PRO PRO B . n B 2 9 PHE 9 948 948 PHE PHE B . n B 2 10 GLU 10 949 949 GLU GLU B . n B 2 11 TYR 11 950 950 TYR TYR B . n B 2 12 ILE 12 951 951 ILE ILE B . n B 2 13 ASP 13 952 952 ASP ASP B . n B 2 14 ASP 14 953 953 ASP ASP B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-06-21 2 'Structure model' 1 1 2018-04-04 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' Advisory 2 2 'Structure model' 'Data collection' 3 2 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_database_PDB_obs_spr 2 2 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_status.status_code' 2 2 'Structure model' '_pdbx_database_status.status_code_cs' 3 2 'Structure model' '_pdbx_database_status.status_code_mr' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'sodium phosphate-1' 20 ? mM ? 1 DTT-2 2 ? mM ? 1 'sodium chloride-3' 50 ? mM ? 1 'sodium azide-4' 0.1 ? % ? 1 'potassium phosphate-5' 20 ? mM ? 2 'sodium chloride-6' 50 ? mM ? 2 'sodium azide-7' 0.1 ? % ? 2 DTT-8 2 ? mM ? 2 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 3 HG A SER 32 ? ? HZ2 A LYS 34 ? ? 1.34 2 5 HG A SER 66 ? ? H A ASN 68 ? ? 1.30 3 5 HE22 A GLN 50 ? ? HG1 A THR 52 ? ? 1.32 4 5 O A ASP 63 ? ? H A GLY 67 ? ? 1.53 5 6 O A ASP 63 ? ? H A GLY 67 ? ? 1.45 6 7 HH12 A ARG 104 ? ? HH B TYR 950 ? ? 1.32 7 7 H A THR 52 ? ? O A LEU 56 ? ? 1.54 8 9 H2 A ASN 20 ? ? H A LYS 21 ? ? 1.25 9 9 O A ASP 63 ? ? H A GLY 67 ? ? 1.50 10 10 O A ASP 63 ? ? H A GLY 67 ? ? 1.47 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 23 ? ? -106.64 -63.62 2 1 PRO A 77 ? ? -42.32 88.93 3 1 ASP A 78 ? ? 168.95 -42.22 4 1 CYS A 80 ? ? 170.15 77.07 5 1 SER A 102 ? ? 59.47 -0.60 6 1 MET A 109 ? ? -69.08 62.88 7 1 GLU B 941 ? ? 48.93 70.90 8 1 PRO B 945 ? ? -61.58 -174.40 9 1 ASP B 952 ? ? -60.92 80.82 10 2 TYR A 22 ? ? -118.94 70.23 11 2 SER A 55 ? ? 82.42 26.27 12 2 ASP A 78 ? ? 69.04 -12.85 13 2 CYS A 80 ? ? 174.77 101.62 14 2 SER A 102 ? ? -156.97 25.30 15 2 GLN A 110 ? ? -65.28 2.90 16 2 LYS A 113 ? ? -63.42 -71.64 17 2 THR A 114 ? ? 44.06 27.21 18 2 PRO B 945 ? ? -69.52 -178.11 19 2 ASP B 952 ? ? -61.98 80.12 20 3 ASP A 78 ? ? 72.48 -17.92 21 3 LYS A 113 ? ? 177.84 -172.37 22 3 THR A 114 ? ? -169.48 -18.40 23 3 ASP A 115 ? ? 61.29 -2.17 24 3 PRO B 942 ? ? -47.57 -175.67 25 3 PRO B 945 ? ? -48.43 -175.80 26 3 ASP B 952 ? ? -59.49 81.30 27 4 THR A 52 ? ? -69.93 -78.66 28 4 ASP A 53 ? ? -179.37 -22.01 29 4 ASP A 78 ? ? 76.65 -13.82 30 4 CYS A 80 ? ? 171.25 97.09 31 4 SER A 102 ? ? -142.27 11.85 32 4 THR A 114 ? ? 22.02 40.86 33 4 PRO B 945 ? ? -48.72 -177.77 34 4 ASP B 952 ? ? -65.29 80.45 35 5 LYS A 21 ? ? -58.36 -80.74 36 5 LEU A 23 ? ? -107.81 -62.91 37 5 PHE A 26 ? ? 179.59 173.84 38 5 SER A 55 ? ? -155.92 14.46 39 5 LEU A 56 ? ? 54.94 -151.89 40 5 PRO A 77 ? ? -67.38 64.73 41 5 ASP A 78 ? ? 163.57 -19.87 42 5 CYS A 80 ? ? 165.86 99.17 43 5 MET A 109 ? ? -64.84 61.96 44 5 PRO B 945 ? ? -69.01 -176.57 45 5 ASP B 952 ? ? -58.02 81.11 46 6 PRO A 77 ? ? -44.15 82.31 47 6 ASP A 78 ? ? 163.94 -24.02 48 6 CYS A 80 ? ? 161.78 96.71 49 6 LYS A 113 ? ? -69.92 97.62 50 6 PRO B 942 ? ? -46.69 170.35 51 6 ASP B 952 ? ? -61.79 81.00 52 7 PHE A 26 ? ? -161.86 -166.81 53 7 SER A 55 ? ? 83.02 18.31 54 7 ASP A 78 ? ? 79.70 -12.15 55 7 PRO A 86 ? ? -47.83 102.50 56 7 SER A 102 ? ? -146.79 19.75 57 7 PRO B 945 ? ? -68.98 -177.64 58 7 ASP B 952 ? ? -53.03 80.84 59 8 SER A 55 ? ? 85.97 47.38 60 8 ASP A 78 ? ? 77.72 -16.93 61 8 CYS A 80 ? ? 171.05 82.90 62 8 MET A 109 ? ? -63.97 63.19 63 8 GLU B 941 ? ? 66.64 112.88 64 8 GLU B 943 ? ? 6.18 73.09 65 8 ASP B 952 ? ? -56.26 81.90 66 9 LEU A 23 ? ? -102.49 -62.69 67 9 THR A 52 ? ? -75.51 -153.12 68 9 PRO A 77 ? ? -45.59 74.26 69 9 ASP A 78 ? ? 157.45 -35.74 70 9 CYS A 80 ? ? 162.26 102.89 71 9 PRO A 86 ? ? -50.63 103.52 72 9 SER A 102 ? ? 48.45 13.83 73 9 MET A 109 ? ? -69.28 63.03 74 9 GLU B 941 ? ? 64.12 72.09 75 9 ASP B 952 ? ? -48.45 81.64 76 10 PHE A 26 ? ? 178.95 173.28 77 10 SER A 55 ? ? 71.82 48.92 78 10 ARG A 64 ? ? -38.97 -29.23 79 10 ASP A 78 ? ? 75.60 -25.68 80 10 CYS A 80 ? ? 170.92 105.57 81 10 MET A 109 ? ? -67.91 64.11 82 10 GLN A 110 ? ? -64.34 8.00 83 10 ASP A 115 ? ? 51.49 0.71 84 10 ASP B 952 ? ? -55.17 81.06 #