HEADER TRANSPORT PROTEIN 09-MAR-16 2NBP TITLE SOLUTION STRUCTURE OF THE T119M VARIANT OF TRANSTHYRETIN IN ITS TITLE 2 MONOMERIC STATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSTHYRETIN; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: ATTR, PREALBUMIN, TBPA; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TTR, PALB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: M15; SOURCE 8 EXPRESSION_SYSTEM_VARIANT: PREP4; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PQE KEYWDS TRANSTHYRETIN, AMYLOID, AGGREGATION, MONOMER, TRANSPORT PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.KIM,J.OROZ,M.ZWECKSTETTER REVDAT 2 14-JUN-23 2NBP 1 REMARK REVDAT 1 10-MAY-17 2NBP 0 JRNL AUTH J.H.KIM,J.OROZ,M.ZWECKSTETTER JRNL TITL STRUCTURE OF MONOMERIC TRANSTHYRETIN CARRYING THE CLINICALLY JRNL TITL 2 IMPORTANT T119M MUTATION. JRNL REF ANGEW. CHEM. INT. ED. ENGL. V. 55 16168 2016 JRNL REFN ESSN 1521-3773 JRNL PMID 27885756 JRNL DOI 10.1002/ANIE.201608516 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, CYANA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), GUNTERT, MUMENTHALER AND REMARK 3 WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NBP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000104667. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.6-1.2 MM [U-13C; U-15N] T119M REMARK 210 M-TTR, 50 MM MES, 100 MM SODIUM REMARK 210 CHLORIDE, 5 MM DTT, 0.1 MM DSS, REMARK 210 90% H2O/10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 3D HNCA; 3D HN(CO)CA; REMARK 210 3D HNCACB; 3D CBCA(CO)NH; 3D REMARK 210 HCCH-TOCSY; 3D 1H-15N NOESY; 3D REMARK 210 1H-13C NOESY ALIPHATIC; 3D 1H- REMARK 210 13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ; 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER; OXFORD REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : TOPSPIN, NMRPIPE, SPARKY, CYANA, REMARK 210 TALOS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 29 109.09 -54.30 REMARK 500 1 SER A 50 -167.10 -121.36 REMARK 500 1 SER A 85 109.47 -52.99 REMARK 500 1 PRO A 86 77.67 -69.73 REMARK 500 1 GLU A 89 -74.49 -86.47 REMARK 500 1 ASP A 99 140.81 -170.55 REMARK 500 1 PRO A 102 -172.40 -69.77 REMARK 500 2 ALA A 29 108.90 -53.69 REMARK 500 2 SER A 50 -166.68 -121.88 REMARK 500 2 SER A 85 109.50 -53.00 REMARK 500 2 PRO A 86 92.63 -69.85 REMARK 500 2 SER A 117 -176.36 -58.72 REMARK 500 2 PRO A 125 81.85 -69.83 REMARK 500 3 ALA A 29 108.87 -53.42 REMARK 500 3 SER A 50 -167.35 -121.84 REMARK 500 3 SER A 85 109.47 -52.98 REMARK 500 3 GLU A 89 -74.55 -69.38 REMARK 500 4 THR A 5 -179.51 -57.52 REMARK 500 4 SER A 8 170.90 -52.79 REMARK 500 4 ALA A 29 108.79 -53.87 REMARK 500 4 SER A 50 -166.78 -121.86 REMARK 500 4 SER A 85 109.61 -53.07 REMARK 500 4 PRO A 86 93.82 -69.78 REMARK 500 4 PRO A 125 95.39 -69.72 REMARK 500 5 LYS A 9 -72.00 -101.94 REMARK 500 5 ALA A 29 109.02 -53.60 REMARK 500 5 SER A 50 -167.27 -123.68 REMARK 500 5 SER A 85 109.71 -53.18 REMARK 500 5 GLU A 89 -72.04 -101.19 REMARK 500 5 ASN A 98 -74.22 -113.98 REMARK 500 5 ASP A 99 -170.21 -174.56 REMARK 500 5 SER A 100 79.78 63.03 REMARK 500 5 ARG A 103 41.44 39.57 REMARK 500 6 SER A 8 136.53 -174.96 REMARK 500 6 LYS A 9 73.65 -118.76 REMARK 500 6 ALA A 29 109.07 -54.11 REMARK 500 6 SER A 50 -166.85 -121.37 REMARK 500 6 SER A 85 109.55 -53.03 REMARK 500 6 ASN A 98 -73.43 -110.62 REMARK 500 6 ASP A 99 115.36 -176.97 REMARK 500 6 SER A 100 137.15 -176.26 REMARK 500 6 PRO A 102 -171.49 -69.83 REMARK 500 6 ARG A 103 69.46 -114.78 REMARK 500 6 ARG A 104 107.48 -169.15 REMARK 500 7 ALA A 29 109.17 -54.32 REMARK 500 7 SER A 50 -166.77 -122.34 REMARK 500 7 SER A 85 109.61 -53.23 REMARK 500 7 PRO A 86 96.82 -69.71 REMARK 500 7 SER A 100 -74.74 -60.50 REMARK 500 7 PRO A 102 -174.42 -69.75 REMARK 500 REMARK 500 THIS ENTRY HAS 137 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25987 RELATED DB: BMRB REMARK 900 RELATED ID: 2NBO RELATED DB: PDB DBREF 2NBP A 1 127 UNP P02766 TTHY_HUMAN 21 147 SEQADV 2NBP MET A 87 UNP P02766 PHE 107 ENGINEERED MUTATION SEQADV 2NBP MET A 110 UNP P02766 LEU 130 ENGINEERED MUTATION SEQADV 2NBP MET A 119 UNP P02766 THR 139 ENGINEERED MUTATION SEQRES 1 A 127 GLY PRO THR GLY THR GLY GLU SER LYS CYS PRO LEU MET SEQRES 2 A 127 VAL LYS VAL LEU ASP ALA VAL ARG GLY SER PRO ALA ILE SEQRES 3 A 127 ASN VAL ALA VAL HIS VAL PHE ARG LYS ALA ALA ASP ASP SEQRES 4 A 127 THR TRP GLU PRO PHE ALA SER GLY LYS THR SER GLU SER SEQRES 5 A 127 GLY GLU LEU HIS GLY LEU THR THR GLU GLU GLU PHE VAL SEQRES 6 A 127 GLU GLY ILE TYR LYS VAL GLU ILE ASP THR LYS SER TYR SEQRES 7 A 127 TRP LYS ALA LEU GLY ILE SER PRO MET HIS GLU HIS ALA SEQRES 8 A 127 GLU VAL VAL PHE THR ALA ASN ASP SER GLY PRO ARG ARG SEQRES 9 A 127 TYR THR ILE ALA ALA MET LEU SER PRO TYR SER TYR SER SEQRES 10 A 127 THR MET ALA VAL VAL THR ASN PRO LYS GLU HELIX 1 1 ASP A 74 GLY A 83 1 10 SHEET 1 A 4 GLU A 54 LEU A 55 0 SHEET 2 A 4 LEU A 12 ASP A 18 -1 N VAL A 14 O LEU A 55 SHEET 3 A 4 TYR A 105 LEU A 111 1 O ILE A 107 N MET A 13 SHEET 4 A 4 THR A 118 ALA A 120 -1 O THR A 118 N MET A 110 SHEET 1 B 4 TRP A 41 GLY A 47 0 SHEET 2 B 4 VAL A 30 LYS A 35 -1 N VAL A 32 O ALA A 45 SHEET 3 B 4 ILE A 68 ILE A 73 -1 O LYS A 70 N PHE A 33 SHEET 4 B 4 ALA A 91 THR A 96 -1 O PHE A 95 N TYR A 69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1