HEADER DNA BINDING PROTEIN 12-MAR-16 2NBU TITLE SOLUTION STRUCTURE OF THE RAD23 UBIQUITIN-LIKE (UBL) DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: UV EXCISION REPAIR PROTEIN RAD23; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 1-78; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE S288C; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: RAD23, YEL037C, SYGP-ORF29; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PET23A KEYWDS DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR X.CHEN,K.J.WALTERS REVDAT 4 15-MAY-24 2NBU 1 REMARK REVDAT 3 14-JUN-23 2NBU 1 REMARK SEQADV REVDAT 2 17-AUG-16 2NBU 1 JRNL REVDAT 1 20-JUL-16 2NBU 0 JRNL AUTH X.CHEN,L.RANDLES,K.SHI,S.G.TARASOV,H.AIHARA,K.J.WALTERS JRNL TITL STRUCTURES OF RPN1 T1:RAD23 AND HRPN13:HPLIC2 REVEAL JRNL TITL 2 DISTINCT BINDING MECHANISMS BETWEEN SUBSTRATE RECEPTORS AND JRNL TITL 3 SHUTTLE FACTORS OF THE PROTEASOME. JRNL REF STRUCTURE V. 24 1257 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27396824 JRNL DOI 10.1016/J.STR.2016.05.018 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN, TALOS, X-PLOR NIH, PROCHECKNMR REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), CORNILESCU, DELAGLIO AND REMARK 3 BAX (TALOS), SCHWIETERS, KUSZEWSKI, TJANDRA AND REMARK 3 CLORE (X-PLOR NIH), LASKOWSKI AND MACARTHUR REMARK 3 (PROCHECKNMR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000104671. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 50 REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 0.7 MM [U-100% 13C; U-100% 15N] REMARK 210 SHUTTLING PROTEIN, 20 MM SODIUM REMARK 210 PHOSPHATE, 50 MM SODIUM CHLORIDE, REMARK 210 2 MM DTT, 0.1 % SODIUM AZIDE, REMARK 210 95% H2O/5% D2O; 0.7 MM [U-100% REMARK 210 13C; U-100% 15N] SHUTTLING REMARK 210 PROTEIN, 20 MM SODIUM PHOSPHATE, REMARK 210 50 MM SODIUM CHLORIDE, 2 MM DTT, REMARK 210 0.1 % SODIUM AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCACO; 3D HNCO; REMARK 210 3D 1H-15N NOESY; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 3D HCCH-TCOSY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 700 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, XEASY, TALOS, X-PLOR REMARK 210 NIH REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-20 REMARK 465 RES C SSSEQI REMARK 465 ASP A 79 REMARK 465 PRO A 80 REMARK 465 ASN A 81 REMARK 465 SER A 82 REMARK 465 SER A 83 REMARK 465 SER A 84 REMARK 465 VAL A 85 REMARK 465 ASP A 86 REMARK 465 LYS A 87 REMARK 465 LEU A 88 REMARK 465 ALA A 89 REMARK 465 ALA A 90 REMARK 465 ALA A 91 REMARK 465 LEU A 92 REMARK 465 GLU A 93 REMARK 465 HIS A 94 REMARK 465 HIS A 95 REMARK 465 HIS A 96 REMARK 465 HIS A 97 REMARK 465 HIS A 98 REMARK 465 HIS A 99 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASN A 8 -165.84 -115.60 REMARK 500 1 SER A 36 22.83 85.02 REMARK 500 1 VAL A 50 89.34 -67.57 REMARK 500 1 LEU A 51 171.55 -51.21 REMARK 500 1 LYS A 63 -162.14 -126.09 REMARK 500 1 ASP A 66 -168.67 -69.15 REMARK 500 1 GLN A 74 158.66 -46.86 REMARK 500 2 ASN A 8 -168.41 -109.00 REMARK 500 2 LYS A 11 19.56 58.52 REMARK 500 2 ILE A 24 -39.22 -36.61 REMARK 500 2 SER A 36 26.50 82.44 REMARK 500 2 VAL A 50 98.72 -66.00 REMARK 500 2 LEU A 51 170.50 -50.29 REMARK 500 2 LYS A 63 -163.68 -129.38 REMARK 500 2 ASP A 66 -170.93 -62.36 REMARK 500 2 GLN A 74 -97.37 38.38 REMARK 500 2 LYS A 76 -138.49 -84.53 REMARK 500 3 ASN A 8 -167.00 -111.48 REMARK 500 3 SER A 36 32.07 81.46 REMARK 500 3 VAL A 50 95.76 -67.63 REMARK 500 3 LEU A 51 171.96 -50.17 REMARK 500 3 LYS A 63 -160.28 -123.08 REMARK 500 3 ASP A 66 -173.35 -63.06 REMARK 500 3 LYS A 75 -124.48 31.61 REMARK 500 3 SER A 77 107.82 -168.76 REMARK 500 4 PHE A 9 9.81 -65.35 REMARK 500 4 SER A 36 28.26 83.96 REMARK 500 4 VAL A 50 91.43 -69.07 REMARK 500 4 LEU A 51 170.76 -50.44 REMARK 500 4 LYS A 63 -162.77 -125.97 REMARK 500 4 ASP A 66 -172.11 -63.94 REMARK 500 4 GLN A 74 -64.04 70.36 REMARK 500 4 LYS A 75 6.16 -65.96 REMARK 500 4 LYS A 76 95.22 -55.39 REMARK 500 5 ASN A 8 -168.20 -115.28 REMARK 500 5 ILE A 24 -37.50 -39.74 REMARK 500 5 SER A 36 24.95 86.35 REMARK 500 5 VAL A 50 95.33 -67.73 REMARK 500 5 LEU A 51 170.50 -50.35 REMARK 500 5 LYS A 63 -163.46 -128.72 REMARK 500 5 ASP A 66 -173.04 -60.40 REMARK 500 6 SER A 36 23.32 85.84 REMARK 500 6 VAL A 50 94.46 -66.45 REMARK 500 6 LEU A 51 170.88 -52.31 REMARK 500 7 ASN A 8 -164.17 -115.13 REMARK 500 7 LYS A 11 13.29 59.36 REMARK 500 7 ILE A 24 -38.95 -38.60 REMARK 500 7 SER A 36 32.43 80.41 REMARK 500 7 VAL A 50 97.85 -66.70 REMARK 500 7 LEU A 51 170.51 -50.28 REMARK 500 REMARK 500 THIS ENTRY HAS 152 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 25825 RELATED DB: BMRB REMARK 900 RELATED ID: 2NBV RELATED DB: PDB REMARK 900 RELATED ID: 2NBW RELATED DB: PDB DBREF 2NBU A 1 78 UNP P32628 RAD23_YEAST 1 78 SEQADV 2NBU ASP A 79 UNP P32628 EXPRESSION TAG SEQADV 2NBU PRO A 80 UNP P32628 EXPRESSION TAG SEQADV 2NBU ASN A 81 UNP P32628 EXPRESSION TAG SEQADV 2NBU SER A 82 UNP P32628 EXPRESSION TAG SEQADV 2NBU SER A 83 UNP P32628 EXPRESSION TAG SEQADV 2NBU SER A 84 UNP P32628 EXPRESSION TAG SEQADV 2NBU VAL A 85 UNP P32628 EXPRESSION TAG SEQADV 2NBU ASP A 86 UNP P32628 EXPRESSION TAG SEQADV 2NBU LYS A 87 UNP P32628 EXPRESSION TAG SEQADV 2NBU LEU A 88 UNP P32628 EXPRESSION TAG SEQADV 2NBU ALA A 89 UNP P32628 EXPRESSION TAG SEQADV 2NBU ALA A 90 UNP P32628 EXPRESSION TAG SEQADV 2NBU ALA A 91 UNP P32628 EXPRESSION TAG SEQADV 2NBU LEU A 92 UNP P32628 EXPRESSION TAG SEQADV 2NBU GLU A 93 UNP P32628 EXPRESSION TAG SEQADV 2NBU HIS A 94 UNP P32628 EXPRESSION TAG SEQADV 2NBU HIS A 95 UNP P32628 EXPRESSION TAG SEQADV 2NBU HIS A 96 UNP P32628 EXPRESSION TAG SEQADV 2NBU HIS A 97 UNP P32628 EXPRESSION TAG SEQADV 2NBU HIS A 98 UNP P32628 EXPRESSION TAG SEQADV 2NBU HIS A 99 UNP P32628 EXPRESSION TAG SEQRES 1 A 99 MET VAL SER LEU THR PHE LYS ASN PHE LYS LYS GLU LYS SEQRES 2 A 99 VAL PRO LEU ASP LEU GLU PRO SER ASN THR ILE LEU GLU SEQRES 3 A 99 THR LYS THR LYS LEU ALA GLN SER ILE SER CYS GLU GLU SEQRES 4 A 99 SER GLN ILE LYS LEU ILE TYR SER GLY LYS VAL LEU GLN SEQRES 5 A 99 ASP SER LYS THR VAL SER GLU CYS GLY LEU LYS ASP GLY SEQRES 6 A 99 ASP GLN VAL VAL PHE MET VAL SER GLN LYS LYS SER THR SEQRES 7 A 99 ASP PRO ASN SER SER SER VAL ASP LYS LEU ALA ALA ALA SEQRES 8 A 99 LEU GLU HIS HIS HIS HIS HIS HIS HELIX 1 1 THR A 23 SER A 36 1 14 HELIX 2 2 THR A 56 GLY A 61 1 6 SHEET 1 A 4 LYS A 13 LEU A 18 0 SHEET 2 A 4 VAL A 2 LYS A 7 -1 N LEU A 4 O LEU A 16 SHEET 3 A 4 VAL A 68 VAL A 72 1 O VAL A 68 N THR A 5 SHEET 4 A 4 ILE A 42 ILE A 45 -1 N ILE A 45 O VAL A 69 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1