data_2NC1 # _entry.id 2NC1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.392 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104678 RCSB ? ? 2NC1 PDB pdb_00002nc1 10.2210/pdb2nc1/pdb 26000 BMRB ? 10.13018/BMR26000 D_1000104678 WWPDB ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2016-08-10 2 'Structure model' 1 1 2017-11-15 3 'Structure model' 1 2 2023-06-14 4 'Structure model' 1 3 2024-05-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Data collection' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' pdbx_database_related 2 3 'Structure model' database_2 3 3 'Structure model' pdbx_database_status 4 3 'Structure model' pdbx_nmr_software 5 3 'Structure model' pdbx_nmr_spectrometer 6 4 'Structure model' chem_comp_atom 7 4 'Structure model' chem_comp_bond 8 4 'Structure model' database_2 # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_pdbx_database_related.db_id' 2 2 'Structure model' '_pdbx_database_related.db_name' 3 3 'Structure model' '_database_2.pdbx_DOI' 4 3 'Structure model' '_database_2.pdbx_database_accession' 5 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' 6 3 'Structure model' '_pdbx_nmr_software.name' 7 3 'Structure model' '_pdbx_nmr_spectrometer.model' 8 4 'Structure model' '_database_2.pdbx_DOI' # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2NC1 _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2016-03-16 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _pdbx_database_related.db_id _pdbx_database_related.db_name _pdbx_database_related.content_type _pdbx_database_related.details 26000 BMRB unspecified . 2NBX PDB unspecified . 2NBY PDB unspecified . 2NBZ PDB unspecified . 2NC0 PDB unspecified . # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Imai, S.' 1 ;D'Souza, V. ; 2 'Wagner, G.' 3 # _citation.id primary _citation.title 'An accurately preorganized IRES RNA structure enables eIF4G capture for initiation of viral translation.' _citation.journal_abbrev 'Nat. Struct. Mol. Biol.' _citation.journal_volume 23 _citation.page_first 859 _citation.page_last 864 _citation.year 2016 _citation.journal_id_ASTM ? _citation.country US _citation.journal_id_ISSN 1545-9985 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 27525590 _citation.pdbx_database_id_DOI 10.1038/nsmb.3280 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Imai, S.' 1 ? primary 'Kumar, P.' 2 ? primary 'Hellen, C.U.' 3 ? primary ;D'Souza, V.M. ; 4 ? primary 'Wagner, G.' 5 ? # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description 'IRES RNA (67-MER)' _entity.formula_weight 21821.068 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code GGGGCUGAAGGAUGCCCAGAGAGAUCUGGGGCCUCGGGAGAUCGAGGUUAAAAAACGUCUAGGCCCC _entity_poly.pdbx_seq_one_letter_code_can GGGGCUGAAGGAUGCCCAGAGAGAUCUGGGGCCUCGGGAGAUCGAGGUUAAAAAACGUCUAGGCCCC _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 G n 1 4 G n 1 5 C n 1 6 U n 1 7 G n 1 8 A n 1 9 A n 1 10 G n 1 11 G n 1 12 A n 1 13 U n 1 14 G n 1 15 C n 1 16 C n 1 17 C n 1 18 A n 1 19 G n 1 20 A n 1 21 G n 1 22 A n 1 23 G n 1 24 A n 1 25 U n 1 26 C n 1 27 U n 1 28 G n 1 29 G n 1 30 G n 1 31 G n 1 32 C n 1 33 C n 1 34 U n 1 35 C n 1 36 G n 1 37 G n 1 38 G n 1 39 A n 1 40 G n 1 41 A n 1 42 U n 1 43 C n 1 44 G n 1 45 A n 1 46 G n 1 47 G n 1 48 U n 1 49 U n 1 50 A n 1 51 A n 1 52 A n 1 53 A n 1 54 A n 1 55 A n 1 56 C n 1 57 G n 1 58 U n 1 59 C n 1 60 U n 1 61 A n 1 62 G n 1 63 G n 1 64 C n 1 65 C n 1 66 C n 1 67 C n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'synthetic construct' _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id 32630 _pdbx_entity_src_syn.details ? # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 680 680 G G A . n A 1 2 G 2 681 681 G G A . n A 1 3 G 3 682 682 G G A . n A 1 4 G 4 683 683 G G A . n A 1 5 C 5 684 684 C C A . n A 1 6 U 6 685 685 U U A . n A 1 7 G 7 686 686 G G A . n A 1 8 A 8 687 687 A A A . n A 1 9 A 9 688 688 A A A . n A 1 10 G 10 689 689 G G A . n A 1 11 G 11 690 690 G G A . n A 1 12 A 12 691 691 A A A . n A 1 13 U 13 692 692 U U A . n A 1 14 G 14 693 693 G G A . n A 1 15 C 15 694 694 C C A . n A 1 16 C 16 695 695 C C A . n A 1 17 C 17 696 696 C C A . n A 1 18 A 18 697 697 A A A . n A 1 19 G 19 698 698 G G A . n A 1 20 A 20 699 699 A A A . n A 1 21 G 21 700 700 G G A . n A 1 22 A 22 701 701 A A A . n A 1 23 G 23 702 702 G G A . n A 1 24 A 24 703 703 A A A . n A 1 25 U 25 725 725 U U A . n A 1 26 C 26 726 726 C C A . n A 1 27 U 27 727 727 U U A . n A 1 28 G 28 728 728 G G A . n A 1 29 G 29 729 729 G G A . n A 1 30 G 30 730 730 G G A . n A 1 31 G 31 731 731 G G A . n A 1 32 C 32 732 732 C C A . n A 1 33 C 33 733 733 C C A . n A 1 34 U 34 734 734 U U A . n A 1 35 C 35 735 735 C C A . n A 1 36 G 36 736 736 G G A . n A 1 37 G 37 737 737 G G A . n A 1 38 G 38 738 738 G G A . n A 1 39 A 39 739 739 A A A . n A 1 40 G 40 740 740 G G A . n A 1 41 A 41 741 741 A A A . n A 1 42 U 42 762 762 U U A . n A 1 43 C 43 763 763 C C A . n A 1 44 G 44 764 764 G G A . n A 1 45 A 45 765 765 A A A . n A 1 46 G 46 766 766 G G A . n A 1 47 G 47 767 767 G G A . n A 1 48 U 48 768 768 U U A . n A 1 49 U 49 769 769 U U A . n A 1 50 A 50 770 770 A A A . n A 1 51 A 51 771 771 A A A . n A 1 52 A 52 772 772 A A A . n A 1 53 A 53 773 773 A A A . n A 1 54 A 54 774 774 A A A . n A 1 55 A 55 775 775 A A A . n A 1 56 C 56 776 776 C C A . n A 1 57 G 57 777 777 G G A . n A 1 58 U 58 778 778 U U A . n A 1 59 C 59 779 779 C C A . n A 1 60 U 60 780 780 U U A . n A 1 61 A 61 781 781 A A A . n A 1 62 G 62 782 782 G G A . n A 1 63 G 63 783 783 G G A . n A 1 64 C 64 784 784 C C A . n A 1 65 C 65 785 785 C C A . n A 1 66 C 66 786 786 C C A . n A 1 67 C 67 787 787 C C A . n # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2NC1 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2NC1 _struct.title 'Solution structure of the delta-J-delta-K domain of EMCV IRES' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2NC1 _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'IRES, translation initiation, Viral RNA, RNA' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2NC1 _struct_ref.pdbx_db_accession 2NC1 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2NC1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 67 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2NC1 _struct_ref_seq.db_align_beg 680 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 787 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 680 _struct_ref_seq.pdbx_auth_seq_align_end 787 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 67 N3 ? ? A G 680 A C 787 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 67 O2 ? ? A G 680 A C 787 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 67 N4 ? ? A G 680 A C 787 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 A C 66 N3 ? ? A G 681 A C 786 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 A C 66 O2 ? ? A G 681 A C 786 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 A C 66 N4 ? ? A G 681 A C 786 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 65 N3 ? ? A G 682 A C 785 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 65 O2 ? ? A G 682 A C 785 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 65 N4 ? ? A G 682 A C 785 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A C 64 N3 ? ? A G 683 A C 784 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A G 4 N2 ? ? ? 1_555 A C 64 O2 ? ? A G 683 A C 784 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 4 O6 ? ? ? 1_555 A C 64 N4 ? ? A G 683 A C 784 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A C 5 N3 ? ? ? 1_555 A G 63 N1 ? ? A C 684 A G 783 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A C 5 N4 ? ? ? 1_555 A G 63 O6 ? ? A C 684 A G 783 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A C 5 O2 ? ? ? 1_555 A G 63 N2 ? ? A C 684 A G 783 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A U 6 N3 ? ? ? 1_555 A G 62 O6 ? ? A U 685 A G 782 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A U 6 O2 ? ? ? 1_555 A G 62 N1 ? ? A U 685 A G 782 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A G 10 N1 ? ? ? 1_555 A U 60 O2 ? ? A G 689 A U 780 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog19 hydrog ? ? A G 10 O6 ? ? ? 1_555 A U 60 N3 ? ? A G 689 A U 780 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog20 hydrog ? ? A G 11 N1 ? ? ? 1_555 A C 59 N3 ? ? A G 690 A C 779 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 11 N2 ? ? ? 1_555 A C 59 O2 ? ? A G 690 A C 779 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 11 O6 ? ? ? 1_555 A C 59 N4 ? ? A G 690 A C 779 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A A 12 N1 ? ? ? 1_555 A U 58 N3 ? ? A A 691 A U 778 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A A 12 N6 ? ? ? 1_555 A U 58 O4 ? ? A A 691 A U 778 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A U 13 N3 ? ? ? 1_555 A G 57 O6 ? ? A U 692 A G 777 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog26 hydrog ? ? A U 13 O2 ? ? ? 1_555 A G 57 N1 ? ? A U 692 A G 777 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? A G 14 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 693 A C 776 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A G 14 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 693 A C 776 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A G 14 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 693 A C 776 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 15 N3 ? ? ? 1_555 A G 30 N1 ? ? A C 694 A G 730 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A C 15 N4 ? ? ? 1_555 A G 30 O6 ? ? A C 694 A G 730 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 15 O2 ? ? ? 1_555 A G 30 N2 ? ? A C 694 A G 730 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 16 N3 ? ? ? 1_555 A G 29 N1 ? ? A C 695 A G 729 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 16 N4 ? ? ? 1_555 A G 29 O6 ? ? A C 695 A G 729 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 16 O2 ? ? ? 1_555 A G 29 N2 ? ? A C 695 A G 729 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A C 16 O2 ? ? ? 1_555 A A 50 N6 ? ? A C 695 A A 770 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog37 hydrog ? ? A C 17 N3 ? ? ? 1_555 A G 28 N1 ? ? A C 696 A G 728 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog38 hydrog ? ? A C 17 N4 ? ? ? 1_555 A G 28 O6 ? ? A C 696 A G 728 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A C 17 O2 ? ? ? 1_555 A G 28 N2 ? ? A C 696 A G 728 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A C 17 O2 ? ? ? 1_555 A A 51 N6 ? ? A C 696 A A 771 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog41 hydrog ? ? A A 18 N1 ? ? ? 1_555 A U 27 N3 ? ? A A 697 A U 727 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A A 18 N6 ? ? ? 1_555 A U 27 O4 ? ? A A 697 A U 727 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 26 N3 ? ? A G 698 A C 726 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 26 O2 ? ? A G 698 A C 726 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 26 N4 ? ? A G 698 A C 726 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? A A 20 N1 ? ? ? 1_555 A U 25 N3 ? ? A A 699 A U 725 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? A A 20 N6 ? ? ? 1_555 A U 25 O4 ? ? A A 699 A U 725 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? A G 21 N2 ? ? ? 1_555 A A 24 N7 ? ? A G 700 A A 703 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog49 hydrog ? ? A G 21 N3 ? ? ? 1_555 A A 24 N6 ? ? A G 700 A A 703 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog50 hydrog ? ? A G 31 N1 ? ? ? 1_555 A U 48 O2 ? ? A G 731 A U 768 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog51 hydrog ? ? A G 31 O6 ? ? ? 1_555 A U 48 N3 ? ? A G 731 A U 768 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog52 hydrog ? ? A G 31 N2 ? ? ? 1_555 A A 54 N3 ? ? A G 731 A A 774 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog53 hydrog ? ? A C 32 N3 ? ? ? 1_555 A G 47 N1 ? ? A C 732 A G 767 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A C 32 N4 ? ? ? 1_555 A G 47 O6 ? ? A C 732 A G 767 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A C 32 O2 ? ? ? 1_555 A G 47 N2 ? ? A C 732 A G 767 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A C 33 N3 ? ? ? 1_555 A G 46 N1 ? ? A C 733 A G 766 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A C 33 N4 ? ? ? 1_555 A G 46 O6 ? ? A C 733 A G 766 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog58 hydrog ? ? A C 33 O2 ? ? ? 1_555 A G 46 N2 ? ? A C 733 A G 766 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? A U 34 N3 ? ? ? 1_555 A A 45 N1 ? ? A U 734 A A 765 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? A U 34 O4 ? ? ? 1_555 A A 45 N6 ? ? A U 734 A A 765 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A C 35 N3 ? ? ? 1_555 A G 44 N1 ? ? A C 735 A G 764 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A C 35 N4 ? ? ? 1_555 A G 44 O6 ? ? A C 735 A G 764 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A C 35 O2 ? ? ? 1_555 A G 44 N2 ? ? A C 735 A G 764 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A G 36 N1 ? ? ? 1_555 A C 43 N3 ? ? A G 736 A C 763 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 36 N2 ? ? ? 1_555 A C 43 O2 ? ? A G 736 A C 763 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 36 O6 ? ? ? 1_555 A C 43 N4 ? ? A G 736 A C 763 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 37 N1 ? ? ? 1_555 A U 42 O2 ? ? A G 737 A U 762 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog68 hydrog ? ? A G 37 O6 ? ? ? 1_555 A U 42 N3 ? ? A G 737 A U 762 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog69 hydrog ? ? A G 38 N2 ? ? ? 1_555 A A 41 N7 ? ? A G 738 A A 741 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog70 hydrog ? ? A G 38 N3 ? ? ? 1_555 A A 41 N6 ? ? A G 738 A A 741 1_555 ? ? ? ? ? ? TYPE_11_PAIR ? ? ? hydrog71 hydrog ? ? A G 47 N2 ? ? ? 1_555 A A 53 N1 ? ? A G 767 A A 773 1_555 ? ? ? ? ? ? 'G-A MISPAIR' ? ? ? hydrog72 hydrog ? ? A U 49 N3 ? ? ? 1_555 A A 55 N1 ? ? A U 769 A A 775 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A U 49 O4 ? ? ? 1_555 A A 55 N6 ? ? A U 769 A A 775 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A A 50 N3 ? ? ? 1_555 A A 54 N6 ? ? A A 770 A A 774 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 3 _pdbx_validate_rmsd_bond.auth_atom_id_1 "C2'" _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 731 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "O2'" _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 731 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.311 _pdbx_validate_rmsd_bond.bond_target_value 1.412 _pdbx_validate_rmsd_bond.bond_deviation -0.101 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.013 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 2 "C3'" A U 768 ? ? "C2'" A U 768 ? ? "C1'" A U 768 ? ? 106.66 101.50 5.16 0.80 N 2 6 "O4'" A G 731 ? ? "C1'" A G 731 ? ? N9 A G 731 ? ? 113.26 108.50 4.76 0.70 N 3 7 "O4'" A G 731 ? ? "C1'" A G 731 ? ? N9 A G 731 ? ? 113.48 108.50 4.98 0.70 N 4 9 "O4'" A G 731 ? ? "C1'" A G 731 ? ? N9 A G 731 ? ? 113.27 108.50 4.77 0.70 N # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 1000 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2NC1 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2NC1 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system '0.5 mM RNA (67-MER), 10 mM potassium phosphate, 10 mM sodium chloride, 100% D2O' 1 '100% D2O' '0.5 mM RNA (67-MER), 10 mM potassium phosphate, 10 mM sodium chloride, 90% H2O/10% D2O' 2 '90% H2O/10% D2O' ;0.5 mM [U-2H, {H1',H2',H2,H8}-Ade] RNA (67-MER), 10 mM potassium phosphate, 10 mM sodium chloride, 100% D2O ; 3 '100% D2O' '0.5 mM [U-2H]-Cyt, [U-2H]-Ura RNA (67-MER), 10 mM potassium phosphate, 10 mM sodium chloride, 100% D2O' 4 '100% D2O' '0.5 mM [U-2H]-Gua, [U-2H]-Ura RNA (67-MER), 10 mM potassium phosphate, 10 mM sodium chloride, 100% D2O' 5 '100% D2O' ;0.5 mM [U-2H, {H1',H2',H2,H8}-Ade] RNA (67-MER), 10 mM potassium phosphate, 10 mM sodium chloride, 90% H2O/10% D2O ; 6 '90% H2O/10% D2O' # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'RNA (67-MER)-1' 0.5 ? mM ? 1 'potassium phosphate-2' 10 ? mM ? 1 'sodium chloride-3' 10 ? mM ? 1 'RNA (67-MER)-4' 0.5 ? mM ? 2 'potassium phosphate-5' 10 ? mM ? 2 'sodium chloride-6' 10 ? mM ? 2 'RNA (67-MER)-7' 0.5 ? mM ;[U-2H, {H1',H2',H2,H8}-Ade] ; 3 'potassium phosphate-8' 10 ? mM ? 3 'sodium chloride-9' 10 ? mM ? 3 'RNA (67-MER)-10' 0.5 ? mM '[U-2H]-Cyt, [U-2H]-Ura' 4 'potassium phosphate-11' 10 ? mM ? 4 'sodium chloride-12' 10 ? mM ? 4 'RNA (67-MER)-13' 0.5 ? mM '[U-2H]-Gua, [U-2H]-Ura' 5 'potassium phosphate-14' 10 ? mM ? 5 'sodium chloride-15' 10 ? mM ? 5 'RNA (67-MER)-16' 0.5 ? mM ;[U-2H, {H1',H2',H2,H8}-Ade] ; 6 'potassium phosphate-17' 10 ? mM ? 6 'sodium chloride-18' 10 ? mM ? 6 # loop_ _pdbx_nmr_exptl_sample_conditions.conditions_id _pdbx_nmr_exptl_sample_conditions.ionic_strength _pdbx_nmr_exptl_sample_conditions.pH _pdbx_nmr_exptl_sample_conditions.pressure _pdbx_nmr_exptl_sample_conditions.pressure_units _pdbx_nmr_exptl_sample_conditions.temperature _pdbx_nmr_exptl_sample_conditions.temperature_units 1 20 6.5 ambient ? 308 K 2 20 6.5 ambient ? 283 K 3 20 5.5 ambient ? 283 K # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-1H NOESY' 1 2 3 '2D 1H-1H NOESY' 1 3 4 '2D 1H-1H NOESY' 1 4 5 '2D 1H-1H NOESY' 2 5 2 '2D 1H-1H NOESY' 3 6 2 '2D 1H-1H NOESY' 2 7 6 '2D 1H-1H NOESY' 3 8 6 '2D 1H-1H NOESY' # _pdbx_nmr_refine.entry_id 2NC1 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal 'Keller and Wuthrich' 'chemical shift assignment' CARA ? 1 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA ? 2 'Schwieters, Kuszewski, Tjandra and Clore' refinement 'X-PLOR NIH' ? 3 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 U OP3 O N N 111 U P P N N 112 U OP1 O N N 113 U OP2 O N N 114 U "O5'" O N N 115 U "C5'" C N N 116 U "C4'" C N R 117 U "O4'" O N N 118 U "C3'" C N S 119 U "O3'" O N N 120 U "C2'" C N R 121 U "O2'" O N N 122 U "C1'" C N R 123 U N1 N N N 124 U C2 C N N 125 U O2 O N N 126 U N3 N N N 127 U C4 C N N 128 U O4 O N N 129 U C5 C N N 130 U C6 C N N 131 U HOP3 H N N 132 U HOP2 H N N 133 U "H5'" H N N 134 U "H5''" H N N 135 U "H4'" H N N 136 U "H3'" H N N 137 U "HO3'" H N N 138 U "H2'" H N N 139 U "HO2'" H N N 140 U "H1'" H N N 141 U H3 H N N 142 U H5 H N N 143 U H6 H N N 144 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2NC1 'double helix' 2NC1 'a-form double helix' 2NC1 tetraloop 2NC1 'bulge loop' 2NC1 'mismatched base pair' 2NC1 'internal loop' 2NC1 'quadruple helix' 2NC1 'three-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 67 1_555 -0.440 -0.128 -0.251 -2.919 3.406 1.346 1 A_G680:C787_A A 680 ? A 787 ? 19 1 1 A G 2 1_555 A C 66 1_555 -0.476 -0.148 -0.252 -1.160 0.824 2.008 2 A_G681:C786_A A 681 ? A 786 ? 19 1 1 A G 3 1_555 A C 65 1_555 -0.383 -0.146 -0.240 -1.261 -1.414 3.039 3 A_G682:C785_A A 682 ? A 785 ? 19 1 1 A G 4 1_555 A C 64 1_555 -0.220 -0.140 -0.249 -2.556 -8.405 4.203 4 A_G683:C784_A A 683 ? A 784 ? 19 1 1 A C 5 1_555 A G 63 1_555 0.444 -0.196 0.063 -2.320 -15.049 0.307 5 A_C684:G783_A A 684 ? A 783 ? 19 1 1 A U 6 1_555 A G 62 1_555 2.006 -0.280 0.195 -7.625 -9.242 -3.926 6 A_U685:G782_A A 685 ? A 782 ? 28 1 1 A G 10 1_555 A U 60 1_555 -1.965 -0.213 0.159 0.493 1.712 -2.270 7 A_G689:U780_A A 689 ? A 780 ? 28 1 1 A G 11 1_555 A C 59 1_555 -0.150 -0.017 0.136 2.438 -13.706 -1.339 8 A_G690:C779_A A 690 ? A 779 ? 19 1 1 A A 12 1_555 A U 58 1_555 -0.126 -0.183 0.051 -0.187 -18.001 -5.251 9 A_A691:U778_A A 691 ? A 778 ? 20 1 1 A U 13 1_555 A G 57 1_555 1.940 -0.274 0.245 -4.845 -17.968 -2.301 10 A_U692:G777_A A 692 ? A 777 ? 28 1 1 A G 14 1_555 A C 56 1_555 0.007 -0.008 0.237 -12.059 -15.344 -2.948 11 A_G693:C776_A A 693 ? A 776 ? 19 1 1 A C 15 1_555 A G 30 1_555 -0.069 -0.199 0.812 -3.988 -9.657 -6.449 12 A_C694:G730_A A 694 ? A 730 ? 19 1 1 A C 16 1_555 A G 29 1_555 0.260 -0.165 -0.319 -7.507 15.790 -4.906 13 A_C695:G729_A A 695 ? A 729 ? 19 1 1 A C 17 1_555 A G 28 1_555 0.138 0.004 0.110 5.885 -3.482 -2.296 14 A_C696:G728_A A 696 ? A 728 ? 19 1 1 A A 18 1_555 A U 27 1_555 0.026 -0.050 0.005 1.986 -8.916 -3.258 15 A_A697:U727_A A 697 ? A 727 ? 20 1 1 A G 19 1_555 A C 26 1_555 -0.018 -0.008 -0.161 -1.911 -2.660 0.388 16 A_G698:C726_A A 698 ? A 726 ? 19 1 1 A A 20 1_555 A U 25 1_555 0.250 -0.129 -0.027 2.814 8.636 -4.418 17 A_A699:U725_A A 699 ? A 725 ? 20 1 1 A G 21 1_555 A A 24 1_555 6.950 -4.665 -0.405 6.887 0.313 -5.745 18 A_G700:A703_A A 700 ? A 703 ? 11 10 1 A G 31 1_555 A U 48 1_555 -2.099 -0.191 0.521 6.280 -8.840 6.166 19 A_G731:U768_A A 731 ? A 768 ? 28 1 1 A C 32 1_555 A G 47 1_555 0.104 -0.083 -0.036 2.121 -2.997 2.689 20 A_C732:G767_A A 732 ? A 767 ? 19 1 1 A C 33 1_555 A G 46 1_555 -0.192 -0.055 -0.136 7.579 -5.696 -3.944 21 A_C733:G766_A A 733 ? A 766 ? 19 1 1 A U 34 1_555 A A 45 1_555 -0.151 -0.138 -0.057 5.466 -9.536 -6.565 22 A_U734:A765_A A 734 ? A 765 ? 20 1 1 A C 35 1_555 A G 44 1_555 0.052 -0.037 -0.304 3.982 -6.357 -1.109 23 A_C735:G764_A A 735 ? A 764 ? 19 1 1 A G 36 1_555 A C 43 1_555 -0.163 -0.088 -0.314 -2.445 -2.242 2.462 24 A_G736:C763_A A 736 ? A 763 ? 19 1 1 A G 37 1_555 A U 42 1_555 -1.899 -0.303 -0.545 8.236 11.777 -3.413 25 A_G737:U762_A A 737 ? A 762 ? 28 1 1 A G 38 1_555 A A 41 1_555 6.817 -4.624 -0.608 10.448 2.653 -3.329 26 A_G738:A741_A A 738 ? A 741 ? 11 10 1 A U 49 1_555 A A 55 1_555 0.109 -0.238 0.477 12.627 16.965 6.592 27 A_U769:A775_A A 769 ? A 775 ? 20 1 1 A A 50 1_555 A A 54 1_555 6.383 -4.449 0.660 16.984 14.583 -20.089 28 A_A770:A774_A A 770 ? A 774 ? ? 10 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 67 1_555 A G 2 1_555 A C 66 1_555 -0.063 -1.732 3.279 -1.199 10.411 29.410 -5.038 -0.092 2.534 19.733 2.272 31.183 1 AA_G680G681:C786C787_AA A 680 ? A 787 ? A 681 ? A 786 ? 1 A G 2 1_555 A C 66 1_555 A G 3 1_555 A C 65 1_555 -0.050 -1.672 3.265 -1.155 11.641 30.651 -4.790 -0.093 2.482 21.082 2.092 32.758 2 AA_G681G682:C785C786_AA A 681 ? A 786 ? A 682 ? A 785 ? 1 A G 3 1_555 A C 65 1_555 A G 4 1_555 A C 64 1_555 0.069 -1.593 3.237 -0.297 11.157 31.724 -4.423 -0.163 2.547 19.664 0.523 33.583 3 AA_G682G683:C784C785_AA A 682 ? A 785 ? A 683 ? A 784 ? 1 A G 4 1_555 A C 64 1_555 A C 5 1_555 A G 63 1_555 -0.083 -1.408 3.218 -0.615 5.162 35.429 -3.000 0.050 2.991 8.426 1.004 35.796 4 AA_G683C684:G783C784_AA A 683 ? A 784 ? A 684 ? A 783 ? 1 A C 5 1_555 A G 63 1_555 A U 6 1_555 A G 62 1_555 0.273 -1.525 3.535 3.613 -2.257 40.382 -1.923 0.048 3.621 -3.258 -5.216 40.597 5 AA_C684U685:G782G783_AA A 684 ? A 783 ? A 685 ? A 782 ? 1 A G 10 1_555 A U 60 1_555 A G 11 1_555 A C 59 1_555 -0.113 -1.657 3.207 -2.600 11.552 34.395 -4.118 -0.147 2.539 18.856 4.244 36.318 6 AA_G689G690:C779U780_AA A 689 ? A 780 ? A 690 ? A 779 ? 1 A G 11 1_555 A C 59 1_555 A A 12 1_555 A U 58 1_555 -0.160 -1.641 3.296 -0.398 0.908 32.419 -3.098 0.216 3.252 1.625 0.713 32.434 7 AA_G690A691:U778C779_AA A 690 ? A 779 ? A 691 ? A 778 ? 1 A A 12 1_555 A U 58 1_555 A U 13 1_555 A G 57 1_555 0.078 -1.467 3.392 0.339 0.478 39.490 -2.229 -0.074 3.375 0.707 -0.502 39.494 8 AA_A691U692:G777U778_AA A 691 ? A 778 ? A 692 ? A 777 ? 1 A U 13 1_555 A G 57 1_555 A G 14 1_555 A C 56 1_555 -0.242 -1.908 3.185 3.319 9.797 25.801 -6.020 1.196 2.273 20.901 -7.081 27.764 9 AA_U692G693:C776G777_AA A 692 ? A 777 ? A 693 ? A 776 ? 1 A G 14 1_555 A C 56 1_555 A C 15 1_555 A G 30 1_555 2.947 0.863 3.714 9.551 -3.746 56.263 1.149 -2.453 4.063 -3.936 -10.035 57.116 10 AA_G693C694:G730C776_AA A 693 ? A 776 ? A 694 ? A 730 ? 1 A C 15 1_555 A G 30 1_555 A C 16 1_555 A G 29 1_555 0.009 -0.269 4.284 0.857 16.754 17.950 -7.301 0.320 2.965 43.329 -2.217 24.522 11 AA_C694C695:G729G730_AA A 694 ? A 730 ? A 695 ? A 729 ? 1 A C 16 1_555 A G 29 1_555 A C 17 1_555 A G 28 1_555 0.156 -1.548 3.219 -3.162 18.124 22.049 -6.495 -0.903 1.504 39.661 6.921 28.643 12 AA_C695C696:G728G729_AA A 695 ? A 729 ? A 696 ? A 728 ? 1 A C 17 1_555 A G 28 1_555 A A 18 1_555 A U 27 1_555 -0.121 -1.700 3.348 0.621 13.085 30.338 -5.045 0.311 2.425 23.665 -1.123 32.984 13 AA_C696A697:U727G728_AA A 696 ? A 728 ? A 697 ? A 727 ? 1 A A 18 1_555 A U 27 1_555 A G 19 1_555 A C 26 1_555 0.101 -1.696 3.367 0.188 13.617 30.401 -5.070 -0.147 2.409 24.481 -0.338 33.246 14 AA_A697G698:C726U727_AA A 697 ? A 727 ? A 698 ? A 726 ? 1 A G 19 1_555 A C 26 1_555 A A 20 1_555 A U 25 1_555 -0.307 -1.667 3.251 -0.997 13.615 29.117 -5.187 0.397 2.274 25.394 1.859 32.095 15 AA_G698A699:U725C726_AA A 698 ? A 726 ? A 699 ? A 725 ? 1 A A 20 1_555 A U 25 1_555 A G 21 1_555 A A 24 1_555 -0.806 -0.378 3.708 6.449 8.465 51.817 -1.034 1.370 3.495 9.571 -7.292 52.824 16 AA_A699G700:A703U725_AA A 699 ? A 725 ? A 700 ? A 703 ? 1 A G 31 1_555 A U 48 1_555 A C 32 1_555 A G 47 1_555 0.695 1.766 3.782 -10.767 25.533 18.408 -2.926 -3.756 3.243 52.554 22.162 33.167 17 AA_G731C732:G767U768_AA A 731 ? A 768 ? A 732 ? A 767 ? 1 A C 32 1_555 A G 47 1_555 A C 33 1_555 A G 46 1_555 -0.579 -1.482 3.342 -5.048 14.572 21.233 -6.855 0.037 2.013 34.311 11.887 26.191 18 AA_C732C733:G766G767_AA A 732 ? A 767 ? A 733 ? A 766 ? 1 A C 33 1_555 A G 46 1_555 A U 34 1_555 A A 45 1_555 -0.162 -1.694 3.370 -1.696 8.578 30.960 -4.541 0.000 2.816 15.681 3.101 32.142 19 AA_C733U734:A765G766_AA A 733 ? A 766 ? A 734 ? A 765 ? 1 A U 34 1_555 A A 45 1_555 A C 35 1_555 A G 44 1_555 0.183 -1.598 3.415 0.530 3.340 32.523 -3.428 -0.232 3.241 5.944 -0.942 32.694 20 AA_U734C735:G764A765_AA A 734 ? A 765 ? A 735 ? A 764 ? 1 A C 35 1_555 A G 44 1_555 A G 36 1_555 A C 43 1_555 0.174 -1.722 3.463 -1.043 9.728 29.014 -5.143 -0.532 2.748 18.757 2.012 30.585 21 AA_C735G736:C763G764_AA A 735 ? A 764 ? A 736 ? A 763 ? 1 A G 36 1_555 A C 43 1_555 A G 37 1_555 A U 42 1_555 -0.450 -1.743 3.199 -1.555 14.287 20.564 -7.502 0.660 1.678 35.028 3.811 25.043 22 AA_G736G737:U762C763_AA A 736 ? A 763 ? A 737 ? A 762 ? 1 A G 37 1_555 A U 42 1_555 A G 38 1_555 A A 41 1_555 -0.816 0.216 3.817 6.688 13.279 59.378 -0.526 1.175 3.684 13.181 -6.639 61.046 23 AA_G737G738:A741U762_AA A 737 ? A 762 ? A 738 ? A 741 ? 1 A U 49 1_555 A A 55 1_555 A A 50 1_555 A A 54 1_555 -0.023 -1.149 3.979 -13.363 -4.146 39.255 -1.073 -1.725 3.883 -5.947 19.166 41.582 24 AA_U769A770:A774A775_AA A 769 ? A 775 ? A 770 ? A 774 ? # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 800 Bruker AVANCE 1 'Bruker Avance' 700 Bruker AVANCE 2 'Bruker Avance' # _atom_sites.entry_id 2NC1 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_