HEADER PROTEIN BINDING 22-MAR-16 2NC8 TITLE NMR STRUCTURE OF THE MYCOBACTERIUM TUBERCULOSIS LPPM (RV2171) PROTEIN TITLE 2 FOLDED DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: LIPOPROTEIN LPPM; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 26-185; COMPND 5 SYNONYM: LIPOPROTEIN LPPM, LPPM, UNCHARACTERIZED PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM TUBERCULOSIS; SOURCE 3 ORGANISM_TAXID: 1773; SOURCE 4 GENE: LPPM, AFL40_2254, BN1213_00992, BN1303_00406, ERS007661_00910, SOURCE 5 ERS007663_00966, ERS007665_02632, ERS007670_01654, ERS007672_03318, SOURCE 6 ERS007679_00953, ERS007681_03123, ERS007688_03112, ERS007720_03717, SOURCE 7 ERS007722_01662, ERS013447_03488, ERS013471_03169, ERS023446_03335, SOURCE 8 ERS024213_03999, ERS027644_02995, ERS027653_02310, ERS027656_02172, SOURCE 9 ERS027666_01329, ERS031493_03859, ERS031537_04052, ERS075357_01597, SOURCE 10 ERS075361_03109, ERS075387_02172, ERS124361_03770, IQ38_09230, SOURCE 11 IQ40_08885, IQ42_08970, IQ45_08850, IQ47_08830, IQ48_08865, SOURCE 12 IU12_09440, IU13_08950, IU16_08915, IU17_08865, T209_08835; SOURCE 13 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 15 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 16 EXPRESSION_SYSTEM_VARIANT: DE3 KEYWDS TRANSPORT PROTEIN, PROTEIN BINDING EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR P.BARTHE,M.COHEN-GONSAUD REVDAT 3 14-JUN-23 2NC8 1 REMARK DBREF SEQADV REVDAT 2 19-OCT-16 2NC8 1 JRNL REVDAT 1 14-SEP-16 2NC8 0 JRNL AUTH P.BARTHE,R.VEYRON-CHURLET,A.DE VISCH,M.GILLERON,J.M.SALIOU, JRNL AUTH 2 S.TOMAVO,J.NIGOU,P.BRODIN,M.COHEN-GONSAUD JRNL TITL MYCOBACTERIUM TUBERCULOSIS LPPM DISPLAYS AN ORIGINAL JRNL TITL 2 STRUCTURE AND DOMAIN COMPOSITION LINKED TO A DUAL JRNL TITL 3 LOCALIZATION. JRNL REF STRUCTURE V. 24 1788 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27568926 JRNL DOI 10.1016/J.STR.2016.07.009 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.2, CNS 1.2 REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: DGSA-DISTANCE GEOMETRY SIMULATED REMARK 3 ANNEALING REMARK 4 REMARK 4 2NC8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000104685. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 150 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.9 MM [U-100% 15N] PROTEIN, 25 REMARK 210 MM SODIUM PHOSPHATE, 150 MM REMARK 210 SODIUM CHLORIDE, 90% H2O/10% D2O; REMARK 210 0.9 MM [U-100% 13C; U-100% 15N] REMARK 210 PROTEIN, 25 MM SODIUM PHOSPHATE, REMARK 210 150 MM SODIUM CHLORIDE, 90% H2O/ REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D 1H-15N NOESY; REMARK 210 3D 1H-15N TOCSY; 3D HNCA; 3D REMARK 210 HN(COCA)CB; 3D HNCACB; 3D HNCO; REMARK 210 3D HNCACO; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 700 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : GIFA 4.44, CINDY 1.9, CYANA 2.1 REMARK 210 METHOD USED : DISTANCE GEOMETRY, SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-30 REMARK 465 RES C SSSEQI REMARK 465 MET A 4 REMARK 465 GLY A 5 REMARK 465 GLY A 6 REMARK 465 HIS A 7 REMARK 465 HIS A 8 REMARK 465 HIS A 9 REMARK 465 HIS A 10 REMARK 465 HIS A 11 REMARK 465 HIS A 12 REMARK 465 GLY A 13 REMARK 465 GLY A 14 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 136 HZ3 LYS A 165 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 16 86.77 64.97 REMARK 500 1 HIS A 24 96.94 65.73 REMARK 500 1 MET A 25 71.11 71.14 REMARK 500 1 PRO A 36 2.41 -67.12 REMARK 500 1 LYS A 51 -44.34 67.46 REMARK 500 1 PRO A 144 36.63 -75.15 REMARK 500 1 ALA A 145 -103.19 -117.54 REMARK 500 1 ALA A 146 131.05 176.87 REMARK 500 2 LEU A 19 99.09 -69.84 REMARK 500 2 PHE A 21 -74.23 -149.91 REMARK 500 2 GLN A 22 86.27 51.00 REMARK 500 2 PRO A 36 2.37 -65.26 REMARK 500 2 PRO A 50 44.72 -68.42 REMARK 500 2 VAL A 130 83.56 68.05 REMARK 500 2 PRO A 144 42.75 -67.82 REMARK 500 2 ALA A 145 -92.94 -117.09 REMARK 500 2 ALA A 146 126.77 172.01 REMARK 500 2 THR A 179 109.97 -53.25 REMARK 500 2 THR A 183 70.19 61.46 REMARK 500 3 PHE A 21 96.54 77.89 REMARK 500 3 GLN A 22 106.62 -167.86 REMARK 500 3 MET A 25 93.48 69.60 REMARK 500 3 PRO A 36 2.31 -66.65 REMARK 500 3 PRO A 50 -79.33 -36.74 REMARK 500 3 LYS A 51 -53.99 68.31 REMARK 500 3 VAL A 130 -65.92 74.99 REMARK 500 3 SER A 131 -73.90 67.54 REMARK 500 3 ALA A 145 -132.46 -144.61 REMARK 500 3 THR A 183 94.86 57.31 REMARK 500 4 GLU A 17 -79.80 58.93 REMARK 500 4 PRO A 36 -3.32 -58.23 REMARK 500 4 PRO A 50 -76.09 -44.70 REMARK 500 4 LYS A 51 -51.04 68.65 REMARK 500 4 PHE A 66 41.45 -99.70 REMARK 500 4 PRO A 144 43.64 -66.66 REMARK 500 4 ALA A 145 -91.25 -121.30 REMARK 500 4 ALA A 146 123.82 177.85 REMARK 500 4 THR A 183 62.17 62.25 REMARK 500 5 ARG A 16 70.96 61.46 REMARK 500 5 PRO A 36 2.70 -59.45 REMARK 500 5 ASP A 38 35.36 71.96 REMARK 500 5 PRO A 50 -50.57 -18.84 REMARK 500 5 LYS A 51 -68.79 72.57 REMARK 500 5 VAL A 130 101.93 61.35 REMARK 500 5 ALA A 145 -110.53 -140.45 REMARK 500 5 ALA A 146 128.34 -173.10 REMARK 500 5 THR A 179 104.95 -54.61 REMARK 500 5 THR A 183 93.83 63.07 REMARK 500 6 MET A 25 92.75 67.41 REMARK 500 6 PRO A 36 2.92 -63.85 REMARK 500 REMARK 500 THIS ENTRY HAS 282 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 11 ARG A 114 0.09 SIDE CHAIN REMARK 500 11 ARG A 124 0.09 SIDE CHAIN REMARK 500 16 ARG A 16 0.09 SIDE CHAIN REMARK 500 16 ARG A 114 0.13 SIDE CHAIN REMARK 500 27 ARG A 124 0.07 SIDE CHAIN REMARK 500 30 ARG A 114 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26010 RELATED DB: BMRB DBREF1 2NC8 A 26 185 UNP A0A045INR3_MYCTX DBREF2 2NC8 A A0A045INR3 26 185 SEQADV 2NC8 MET A 4 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 GLY A 5 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 GLY A 6 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 HIS A 7 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 HIS A 8 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 HIS A 9 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 HIS A 10 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 HIS A 11 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 HIS A 12 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 GLY A 13 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 GLY A 14 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 GLY A 15 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 ARG A 16 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 GLU A 17 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 ASN A 18 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 LEU A 19 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 TYR A 20 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 PHE A 21 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 GLN A 22 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 GLY A 23 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 HIS A 24 UNP A0A045INR EXPRESSION TAG SEQADV 2NC8 MET A 25 UNP A0A045INR EXPRESSION TAG SEQRES 1 A 182 MET GLY GLY HIS HIS HIS HIS HIS HIS GLY GLY GLY ARG SEQRES 2 A 182 GLU ASN LEU TYR PHE GLN GLY HIS MET LEU ARG VAL ARG SEQRES 3 A 182 ALA SER ILE THR ILE SER PRO ASP ASP LEU VAL SER GLY SEQRES 4 A 182 GLU ILE ILE ALA ALA ALA LYS PRO LYS ASN SER LYS ASP SEQRES 5 A 182 THR GLY PRO ALA LEU ASP GLY ASP VAL PRO PHE SER GLN SEQRES 6 A 182 LYS VAL ALA VAL SER ASN TYR ASP SER ASP GLY TYR VAL SEQRES 7 A 182 GLY SER GLN ALA VAL PHE SER ASP LEU THR PHE ALA GLU SEQRES 8 A 182 LEU PRO GLN LEU ALA ASN MET ASN SER ASP ALA ALA GLY SEQRES 9 A 182 VAL ASN LEU SER LEU ARG ARG ASN GLY ASN ILE VAL ILE SEQRES 10 A 182 LEU GLU GLY ARG ALA ASP LEU THR SER VAL SER ASP PRO SEQRES 11 A 182 ASP ALA ASP VAL GLU LEU THR VAL ALA PHE PRO ALA ALA SEQRES 12 A 182 VAL THR SER THR ASN GLY ASP ARG ILE GLU PRO GLU VAL SEQRES 13 A 182 VAL GLN TRP LYS LEU LYS PRO GLY VAL VAL SER THR MET SEQRES 14 A 182 SER ALA GLN ALA ARG TYR THR ASP PRO ASN THR ARG SER HELIX 1 1 PHE A 66 GLN A 68 5 3 HELIX 2 2 ALA A 93 GLY A 107 1 15 SHEET 1 A 7 VAL A 70 SER A 77 0 SHEET 2 A 7 TYR A 80 THR A 91 -1 O VAL A 86 N ALA A 71 SHEET 3 A 7 LEU A 39 ALA A 48 -1 N ALA A 48 O VAL A 81 SHEET 4 A 7 ARG A 27 SER A 35 -1 N ARG A 27 O ALA A 47 SHEET 5 A 7 ASP A 136 ALA A 142 1 O GLU A 138 N ALA A 30 SHEET 6 A 7 VAL A 159 LEU A 164 -1 O VAL A 160 N VAL A 141 SHEET 7 A 7 ASP A 153 GLU A 156 -1 N ASP A 153 O GLN A 161 SHEET 1 B 4 ASN A 109 ASN A 115 0 SHEET 2 B 4 ILE A 118 ASP A 126 -1 O ILE A 118 N ASN A 115 SHEET 3 B 4 VAL A 169 ARG A 177 -1 O ALA A 176 N VAL A 119 SHEET 4 B 4 VAL A 147 ASN A 151 -1 N ASN A 151 O SER A 173 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1