HEADER CHAPERONE 23-MAR-16 2NC9 TITLE APO SOLUTION STRUCTURE OF HOP TPR2A COMPND MOL_ID: 1; COMPND 2 MOLECULE: STRESS-INDUCED-PHOSPHOPROTEIN 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 280-350; COMPND 5 SYNONYM: STI1, HSC70/HSP90-ORGANIZING PROTEIN, HOP, RENAL CARCINOMA COMPND 6 ANTIGEN NY-REN-11, TRANSFORMATION-SENSITIVE PROTEIN IEF SSP 3521; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: STIP1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 9 EXPRESSION_SYSTEM_VARIANT: DE3 (PLYSS); SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PTWO-E; SOURCE 11 OTHER_DETAILS: PTWO-E BASE ON PET17-B VECTOR KEYWDS CHAPERONE, HEAT-SHOCK, HSP90, TPR EXPDTA SOLUTION NMR NUMMDL 20 MDLTYP MINIMIZED AVERAGE AUTHOR J.F.DARBY,L.R.VIDLER,P.J.SIMPSON,S.J.MATTHEWS,S.Y.SHARP,L.H.PEARL, AUTHOR 2 S.HOELDER,P.WORKMAN REVDAT 3 01-MAY-24 2NC9 1 REMARK REVDAT 2 28-OCT-20 2NC9 1 JRNL REMARK REVDAT 1 29-MAR-17 2NC9 0 JRNL AUTH J.F.DARBY,L.R.VIDLER,P.J.SIMPSON,B.AL-LAZIKANI,S.J.MATTHEWS, JRNL AUTH 2 S.Y.SHARP,L.H.PEARL,S.HOELDER,P.WORKMAN JRNL TITL SOLUTION STRUCTURE OF THE HOP TPR2A DOMAIN AND INVESTIGATION JRNL TITL 2 OF TARGET DRUGGABILITY BY NMR, BIOCHEMICAL AND IN SILICO JRNL TITL 3 APPROACHES. JRNL REF SCI REP V. 10 16000 2020 JRNL REFN ESSN 2045-2322 JRNL PMID 32994435 JRNL DOI 10.1038/S41598-020-71969-W REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 3.1, ARIA REMARK 3 AUTHORS : BRUKER BIOSPIN (TOPSPIN), LINGE, O'DONOGHUE AND REMARK 3 NILGES (ARIA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NC9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000104686. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.5 REMARK 210 IONIC STRENGTH : 70 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM [U-13C; U-15N] PROTEIN, REMARK 210 20 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 1 MM DTT, 0.01 % REMARK 210 SODIUM AZIDE, 90% H2O/10% D2O; REMARK 210 1.5 MM [U-13C; U-15N] PROTEIN, REMARK 210 20 MM SODIUM PHOSPHATE, 50 MM REMARK 210 SODIUM CHLORIDE, 1 MM DTT, 0.01 % REMARK 210 SODIUM AZIDE, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HN(CO)CA; 3D CBCA(CO)NH; 3D REMARK 210 HNCACB; 3D HBHA(CO)NH; 3D HCCH- REMARK 210 TOCSY; 3D H(CCCO)NH-TOCSY; 3D (H) REMARK 210 C(CCO)NH-TOCSY; 3D 1H-15N NOESY; REMARK 210 3D 1H-13C NOESY; 2D (HB)CB(CGCD) REMARK 210 H-TOCSY; 2D 1H-13C HSQC AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, NMRVIEW, TALOS, ARIA REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 13 TYR A 50 CZ TYR A 50 CE2 -0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 13 TYR A 37 CB - CG - CD2 ANGL. DEV. = 7.3 DEGREES REMARK 500 13 TYR A 37 CB - CG - CD1 ANGL. DEV. = -7.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 28 -2.27 64.72 REMARK 500 1 ASP A 44 83.62 -162.22 REMARK 500 1 LYS A 104 52.66 -105.49 REMARK 500 2 LYS A 104 59.89 -102.01 REMARK 500 3 ASP A 84 108.80 -41.57 REMARK 500 4 LYS A 104 66.03 -102.86 REMARK 500 5 LYS A 104 59.66 -92.53 REMARK 500 6 LYS A 104 56.66 -100.68 REMARK 500 9 LYS A 104 57.54 -108.67 REMARK 500 11 ASP A 84 109.71 -50.63 REMARK 500 11 LYS A 104 57.68 -102.04 REMARK 500 12 ASP A 63 59.99 -100.83 REMARK 500 13 ASP A 84 107.57 -44.58 REMARK 500 14 THR A 46 34.53 -89.91 REMARK 500 14 LYS A 104 57.66 -93.92 REMARK 500 15 ASP A 84 106.84 -50.20 REMARK 500 15 LYS A 104 60.60 -101.22 REMARK 500 17 LYS A 28 19.08 57.06 REMARK 500 17 ASP A 29 58.68 -90.86 REMARK 500 17 ASP A 84 107.89 -50.34 REMARK 500 17 GLU A 103 33.07 74.22 REMARK 500 17 LYS A 104 58.65 -110.68 REMARK 500 17 ARG A 120 109.36 -56.99 REMARK 500 18 LYS A 28 19.47 59.31 REMARK 500 18 ASP A 63 75.60 -102.65 REMARK 500 18 LYS A 104 59.68 -92.92 REMARK 500 19 LYS A 104 56.07 -102.71 REMARK 500 20 LYS A 27 30.04 -97.66 REMARK 500 20 ASP A 84 108.57 -47.75 REMARK 500 20 LYS A 104 58.13 -97.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 PHE A 100 0.07 SIDE CHAIN REMARK 500 3 TYR A 37 0.07 SIDE CHAIN REMARK 500 3 PHE A 100 0.06 SIDE CHAIN REMARK 500 8 TYR A 37 0.07 SIDE CHAIN REMARK 500 11 TYR A 25 0.05 SIDE CHAIN REMARK 500 12 TYR A 37 0.08 SIDE CHAIN REMARK 500 14 PHE A 100 0.06 SIDE CHAIN REMARK 500 17 TYR A 25 0.05 SIDE CHAIN REMARK 500 17 TYR A 37 0.09 SIDE CHAIN REMARK 500 18 TYR A 25 0.05 SIDE CHAIN REMARK 500 18 TYR A 99 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26011 RELATED DB: BMRB DBREF 2NC9 A 9 139 UNP P31948 STIP1_HUMAN 220 350 SEQRES 1 A 131 GLU ASN LYS LYS GLN ALA LEU LYS GLU LYS GLU LEU GLY SEQRES 2 A 131 ASN ASP ALA TYR LYS LYS LYS ASP PHE ASP THR ALA LEU SEQRES 3 A 131 LYS HIS TYR ASP LYS ALA LYS GLU LEU ASP PRO THR ASN SEQRES 4 A 131 MET THR TYR ILE THR ASN GLN ALA ALA VAL TYR PHE GLU SEQRES 5 A 131 LYS GLY ASP TYR ASN LYS CYS ARG GLU LEU CYS GLU LYS SEQRES 6 A 131 ALA ILE GLU VAL GLY ARG GLU ASN ARG GLU ASP TYR ARG SEQRES 7 A 131 GLN ILE ALA LYS ALA TYR ALA ARG ILE GLY ASN SER TYR SEQRES 8 A 131 PHE LYS GLU GLU LYS TYR LYS ASP ALA ILE HIS PHE TYR SEQRES 9 A 131 ASN LYS SER LEU ALA GLU HIS ARG THR PRO ASP VAL LEU SEQRES 10 A 131 LYS LYS CYS GLN GLN ALA GLU LYS ILE LEU LYS GLU GLN SEQRES 11 A 131 GLU HELIX 1 1 GLU A 9 LYS A 26 1 18 HELIX 2 2 ASP A 29 ASP A 44 1 16 HELIX 3 3 ASN A 47 GLY A 62 1 16 HELIX 4 4 ASP A 63 ARG A 79 1 17 HELIX 5 5 ASP A 84 GLU A 102 1 19 HELIX 6 6 LYS A 104 HIS A 119 1 16 HELIX 7 7 THR A 121 GLU A 139 1 19 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1