HEADER TRANSFERASE 28-MAR-16 2NCE TITLE SOLUTION STRUCTURE OF CA2+-BOUND C2 DOMAIN FROM PROTEIN KINASE C ALPHA TITLE 2 IN THE FORM OF COMPLEX WITH V5-PHM PEPTIDE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE C ALPHA TYPE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C2 DOMAIN RESIDUES 155-293; COMPND 5 SYNONYM: PKC-A, PKC-ALPHA; COMPND 6 EC: 2.7.11.13; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PRKCA, PKCA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET-SUMO KEYWDS TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.YANG,T.I.IGUMENOVA REVDAT 2 14-JUN-23 2NCE 1 REMARK LINK REVDAT 1 29-MAR-17 2NCE 0 JRNL AUTH Y.YANG,T.I.IGUMENOVA JRNL TITL CA2+-SENSING DOMAIN CONTRIBUTES TO AUTO-INHIBITION OF JRNL TITL 2 PROTEIN KINASE CALPHA THROUGH INTERACTIONS WITH C-TERMINAL JRNL TITL 3 TAIL JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA, CNS REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), BRUNGER, REMARK 3 ADAMS, CLORE, GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NCE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAR-16. REMARK 100 THE DEPOSITION ID IS D_1000104690. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 296.15 REMARK 210 PH : 6.0 REMARK 210 IONIC STRENGTH : 0.076 REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2.225 MM CALCIUM ION, 0.89 MM [U REMARK 210 -13C; U-15N] C2, 6.7 MM MES, 67 REMARK 210 MM POTASSIUM CHLORIDE, 0.02 % REMARK 210 SODIUM AZIDE, 2 MM PHM PEPTIDE, REMARK 210 92% H2O/8% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCO; 3D REMARK 210 HN(CA)CO; 3D HNCACB; 2D 1H-13C REMARK 210 HSQC ALIPHATIC; 3D C(CO)NH; 3D REMARK 210 H(CCO)NH; 3D HCCH-TOCSY; 3D HCCH- REMARK 210 COSY; 3D 1H-15N TOCSY; 2D 1H-13C REMARK 210 HSQC AROMATIC; 3D HCCH-TOCSY REMARK 210 AROMATIC; 3D 1H-15N NOESY; 3D 1H- REMARK 210 13C NOESY; 3D HNHA REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, TOPSPIN, SPARKY, PSVS, REMARK 210 CCPNMR REMARK 210 METHOD USED : DGSA-DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 400 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 216 -75.06 -60.44 REMARK 500 1 SER A 217 99.82 -165.18 REMARK 500 1 LYS A 232 155.08 -49.33 REMARK 500 1 PRO A 233 -24.34 -39.05 REMARK 500 1 THR A 251 -77.62 -117.74 REMARK 500 1 TYR A 285 -57.27 -121.79 REMARK 500 1 PRO A 291 -70.64 -50.71 REMARK 500 2 LYS A 158 73.43 -112.76 REMARK 500 2 SER A 217 81.84 25.36 REMARK 500 2 LYS A 232 150.11 -49.95 REMARK 500 2 PRO A 233 -7.22 -53.82 REMARK 500 2 ARG A 249 -155.07 58.21 REMARK 500 3 LYS A 209 108.05 -58.62 REMARK 500 3 SER A 217 74.24 28.88 REMARK 500 3 ASN A 220 58.12 -152.26 REMARK 500 3 LYS A 232 170.14 -49.43 REMARK 500 3 PRO A 233 -27.63 -37.61 REMARK 500 3 THR A 251 -75.32 -135.75 REMARK 500 4 SER A 217 99.05 -66.45 REMARK 500 4 THR A 251 -73.96 -140.43 REMARK 500 4 GLU A 292 86.00 62.72 REMARK 500 5 SER A 217 109.89 -46.74 REMARK 500 5 TRP A 223 -60.51 -97.20 REMARK 500 5 LYS A 232 171.33 -53.31 REMARK 500 5 PRO A 233 -31.02 -34.85 REMARK 500 5 THR A 251 -62.25 -147.83 REMARK 500 5 TYR A 285 -56.77 -120.94 REMARK 500 5 GLU A 292 85.56 68.36 REMARK 500 6 ASP A 193 63.68 -159.53 REMARK 500 6 ARG A 216 -178.29 -63.94 REMARK 500 6 LYS A 232 167.06 -49.73 REMARK 500 6 PRO A 233 -26.75 -37.02 REMARK 500 6 THR A 251 -75.49 -122.35 REMARK 500 6 GLU A 292 72.68 56.35 REMARK 500 7 LYS A 158 29.92 -150.91 REMARK 500 7 SER A 217 87.37 21.83 REMARK 500 7 ASN A 220 64.80 -165.46 REMARK 500 7 LYS A 232 155.31 -49.96 REMARK 500 7 PRO A 233 -27.22 -38.75 REMARK 500 7 THR A 251 -157.25 -160.11 REMARK 500 7 LEU A 278 -164.08 -116.84 REMARK 500 7 TYR A 285 -54.32 -120.11 REMARK 500 7 PRO A 291 -75.20 -59.78 REMARK 500 8 LYS A 158 23.42 -157.98 REMARK 500 8 ASP A 203 61.10 -150.21 REMARK 500 8 LYS A 209 108.22 -56.49 REMARK 500 8 SER A 217 102.83 -29.37 REMARK 500 8 ASP A 237 22.95 -79.33 REMARK 500 8 THR A 251 -71.41 -111.68 REMARK 500 8 GLU A 292 84.23 64.60 REMARK 500 REMARK 500 THIS ENTRY HAS 134 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 MET A 186 O REMARK 620 2 ASP A 187 OD1 89.9 REMARK 620 3 ASP A 246 OD2 134.4 91.6 REMARK 620 4 ASP A 248 OD1 145.5 68.5 74.9 REMARK 620 5 ASP A 248 OD2 105.0 98.9 119.7 55.5 REMARK 620 6 ASP A 254 OD2 73.9 158.2 89.7 132.5 99.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 187 OD2 REMARK 620 2 ASP A 187 OD1 56.4 REMARK 620 3 ASP A 193 OD1 81.6 82.3 REMARK 620 4 ASP A 246 OD1 139.8 84.2 85.9 REMARK 620 5 TRP A 247 O 120.9 139.4 138.1 93.3 REMARK 620 6 ASP A 248 OD1 84.9 68.8 150.9 88.1 70.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26016 RELATED DB: BMRB REMARK 900 RELATED ID: 2NCF RELATED DB: PDB DBREF 2NCE A 155 293 UNP P05696 KPCA_RAT 155 293 SEQRES 1 A 139 HIS THR GLU LYS ARG GLY ARG ILE TYR LEU LYS ALA GLU SEQRES 2 A 139 VAL THR ASP GLU LYS LEU HIS VAL THR VAL ARG ASP ALA SEQRES 3 A 139 LYS ASN LEU ILE PRO MET ASP PRO ASN GLY LEU SER ASP SEQRES 4 A 139 PRO TYR VAL LYS LEU LYS LEU ILE PRO ASP PRO LYS ASN SEQRES 5 A 139 GLU SER LYS GLN LYS THR LYS THR ILE ARG SER THR LEU SEQRES 6 A 139 ASN PRO GLN TRP ASN GLU SER PHE THR PHE LYS LEU LYS SEQRES 7 A 139 PRO SER ASP LYS ASP ARG ARG LEU SER VAL GLU ILE TRP SEQRES 8 A 139 ASP TRP ASP ARG THR THR ARG ASN ASP PHE MET GLY SER SEQRES 9 A 139 LEU SER PHE GLY VAL SER GLU LEU MET LYS MET PRO ALA SEQRES 10 A 139 SER GLY TRP TYR LYS LEU LEU ASN GLN GLU GLU GLY GLU SEQRES 11 A 139 TYR TYR ASN VAL PRO ILE PRO GLU GLY HET CA A 301 1 HET CA A 302 1 HETNAM CA CALCIUM ION FORMUL 2 CA 2(CA 2+) HELIX 1 1 LYS A 232 ASP A 237 5 6 HELIX 2 2 VAL A 263 MET A 269 1 7 HELIX 3 3 GLU A 281 TYR A 285 5 5 SHEET 1 A 5 GLN A 222 THR A 228 0 SHEET 2 A 5 LEU A 173 LYS A 181 -1 N VAL A 177 O GLU A 225 SHEET 3 A 5 ARG A 161 VAL A 168 -1 N LYS A 165 O THR A 176 SHEET 4 A 5 ALA A 271 LYS A 276 -1 O ALA A 271 N ALA A 166 SHEET 5 A 5 PRO A 289 ILE A 290 -1 O ILE A 290 N TRP A 274 SHEET 1 B 4 GLN A 210 LYS A 211 0 SHEET 2 B 4 PRO A 194 ILE A 201 -1 N LEU A 198 O GLN A 210 SHEET 3 B 4 ARG A 239 ASP A 246 -1 O TRP A 245 N TYR A 195 SHEET 4 B 4 ASP A 254 GLY A 262 -1 O LEU A 259 N VAL A 242 LINK O MET A 186 CA CA A 302 1555 1555 2.57 LINK OD2 ASP A 187 CA CA A 301 1555 1555 1.93 LINK OD1 ASP A 187 CA CA A 301 1555 1555 2.56 LINK OD1 ASP A 187 CA CA A 302 1555 1555 1.88 LINK OD1 ASP A 193 CA CA A 301 1555 1555 2.06 LINK OD1 ASP A 246 CA CA A 301 1555 1555 1.89 LINK OD2 ASP A 246 CA CA A 302 1555 1555 1.80 LINK O TRP A 247 CA CA A 301 1555 1555 2.55 LINK OD1 ASP A 248 CA CA A 301 1555 1555 1.96 LINK OD1 ASP A 248 CA CA A 302 1555 1555 2.61 LINK OD2 ASP A 248 CA CA A 302 1555 1555 1.79 LINK OD2 ASP A 254 CA CA A 302 1555 1555 1.84 CISPEP 1 ILE A 201 PRO A 202 1 0.31 CISPEP 2 ILE A 201 PRO A 202 2 1.07 CISPEP 3 ILE A 201 PRO A 202 3 1.20 CISPEP 4 ILE A 201 PRO A 202 4 0.71 CISPEP 5 ILE A 201 PRO A 202 5 0.36 CISPEP 6 ILE A 201 PRO A 202 6 -0.75 CISPEP 7 ILE A 201 PRO A 202 7 -0.81 CISPEP 8 ILE A 201 PRO A 202 8 0.34 CISPEP 9 ILE A 201 PRO A 202 9 0.99 CISPEP 10 ILE A 201 PRO A 202 10 0.13 CISPEP 11 ILE A 201 PRO A 202 11 5.34 CISPEP 12 ILE A 201 PRO A 202 12 -0.27 CISPEP 13 ILE A 201 PRO A 202 13 -0.07 CISPEP 14 ILE A 201 PRO A 202 14 -2.25 CISPEP 15 ILE A 201 PRO A 202 15 -0.78 CISPEP 16 ILE A 201 PRO A 202 16 0.66 CISPEP 17 ILE A 201 PRO A 202 17 0.29 CISPEP 18 ILE A 201 PRO A 202 18 3.54 CISPEP 19 ILE A 201 PRO A 202 19 1.23 CISPEP 20 ILE A 201 PRO A 202 20 4.91 SITE 1 AC1 6 ASP A 187 ASP A 193 ASP A 246 TRP A 247 SITE 2 AC1 6 ASP A 248 CA A 302 SITE 1 AC2 6 MET A 186 ASP A 187 ASP A 246 ASP A 248 SITE 2 AC2 6 ASP A 254 CA A 301 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1