data_2NCN # _entry.id 2NCN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.371 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id _database_2.pdbx_database_accession _database_2.pdbx_DOI RCSB104697 RCSB ? ? 2NCN PDB pdb_00002ncn 10.2210/pdb2ncn/pdb 26603 BMRB ? ? D_1000104697 WWPDB ? ? # _pdbx_database_related.content_type unspecified _pdbx_database_related.db_id 26603 _pdbx_database_related.db_name BMRB _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2NCN _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2016-04-11 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data REL # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Krichel, C.' 1 'Weiergraeber, O.H.' 2 'Willbold, D.' 3 'Neudecker, P.' 4 # _citation.id primary _citation.title ;Solution structure of the autophagy-related protein LC3C reveals a polyproline II motif on a mobile tether with phosphorylation site. ; _citation.journal_abbrev 'Sci Rep' _citation.journal_volume 9 _citation.page_first 14167 _citation.page_last 14167 _citation.year 2019 _citation.journal_id_ASTM ? _citation.country UK _citation.journal_id_ISSN 2045-2322 _citation.journal_id_CSD ? _citation.book_publisher ? _citation.pdbx_database_id_PubMed 31578424 _citation.pdbx_database_id_DOI 10.1038/s41598-019-48155-8 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Krichel, C.' 1 ? primary 'Mockel, C.' 2 ? primary 'Schillinger, O.' 3 ? primary 'Huesgen, P.F.' 4 0000-0002-0335-2242 primary 'Sticht, H.' 5 ? primary 'Strodel, B.' 6 0000-0002-8734-7765 primary 'Weiergraber, O.H.' 7 ? primary 'Willbold, D.' 8 0000-0002-0065-7366 primary 'Neudecker, P.' 9 0000-0002-0557-966X # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Autophagy-Related Protein LC3C' _entity.formula_weight 14802.249 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name ;Autophagy-related protein LC3 C, Autophagy-related ubiquitin-like modifier LC3 C, MAP1 light chain 3-like protein 3, MAP1A/MAP1B light chain 3 C, MAP1A/MAP1B LC3 C, Microtubule-associated protein 1 light chain 3 gamma ; # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GSMPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMV LRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG ; _entity_poly.pdbx_seq_one_letter_code_can ;GSMPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMV LRATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 MET n 1 4 PRO n 1 5 PRO n 1 6 PRO n 1 7 GLN n 1 8 LYS n 1 9 ILE n 1 10 PRO n 1 11 SER n 1 12 VAL n 1 13 ARG n 1 14 PRO n 1 15 PHE n 1 16 LYS n 1 17 GLN n 1 18 ARG n 1 19 LYS n 1 20 SER n 1 21 LEU n 1 22 ALA n 1 23 ILE n 1 24 ARG n 1 25 GLN n 1 26 GLU n 1 27 GLU n 1 28 VAL n 1 29 ALA n 1 30 GLY n 1 31 ILE n 1 32 ARG n 1 33 ALA n 1 34 LYS n 1 35 PHE n 1 36 PRO n 1 37 ASN n 1 38 LYS n 1 39 ILE n 1 40 PRO n 1 41 VAL n 1 42 VAL n 1 43 VAL n 1 44 GLU n 1 45 ARG n 1 46 TYR n 1 47 PRO n 1 48 ARG n 1 49 GLU n 1 50 THR n 1 51 PHE n 1 52 LEU n 1 53 PRO n 1 54 PRO n 1 55 LEU n 1 56 ASP n 1 57 LYS n 1 58 THR n 1 59 LYS n 1 60 PHE n 1 61 LEU n 1 62 VAL n 1 63 PRO n 1 64 GLN n 1 65 GLU n 1 66 LEU n 1 67 THR n 1 68 MET n 1 69 THR n 1 70 GLN n 1 71 PHE n 1 72 LEU n 1 73 SER n 1 74 ILE n 1 75 ILE n 1 76 ARG n 1 77 SER n 1 78 ARG n 1 79 MET n 1 80 VAL n 1 81 LEU n 1 82 ARG n 1 83 ALA n 1 84 THR n 1 85 GLU n 1 86 ALA n 1 87 PHE n 1 88 TYR n 1 89 LEU n 1 90 LEU n 1 91 VAL n 1 92 ASN n 1 93 ASN n 1 94 LYS n 1 95 SER n 1 96 LEU n 1 97 VAL n 1 98 SER n 1 99 MET n 1 100 SER n 1 101 ALA n 1 102 THR n 1 103 MET n 1 104 ALA n 1 105 GLU n 1 106 ILE n 1 107 TYR n 1 108 ARG n 1 109 ASP n 1 110 TYR n 1 111 LYS n 1 112 ASP n 1 113 GLU n 1 114 ASP n 1 115 GLY n 1 116 PHE n 1 117 VAL n 1 118 TYR n 1 119 MET n 1 120 THR n 1 121 TYR n 1 122 ALA n 1 123 SER n 1 124 GLN n 1 125 GLU n 1 126 THR n 1 127 PHE n 1 128 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene MAP1LC3C _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector pGEX-4T-2 _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code MLP3C_HUMAN _struct_ref.pdbx_db_accession Q9BXW4 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MPPPQKIPSVRPFKQRKSLAIRQEEVAGIRAKFPNKIPVVVERYPRETFLPPLDKTKFLVPQELTMTQFLSIIRSRMVLR ATEAFYLLVNNKSLVSMSATMAEIYRDYKDEDGFVYMTYASQETFG ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2NCN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 3 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 128 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q9BXW4 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 126 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 126 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2NCN GLY A 1 ? UNP Q9BXW4 ? ? 'expression tag' -1 1 1 2NCN SER A 2 ? UNP Q9BXW4 ? ? 'expression tag' 0 2 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 3 '2D 1H-1H TOCSY' 1 2 3 '2D 1H-1H NOESY' 1 3 1 '2D 1H-15N HSQC' 1 4 1 '3D 1H-15N TOCSY' 1 5 1 '3D 1H-15N NOESY' 1 6 1 '3D 1H-15N 1H-15N NOESY' 1 7 2 '3D HNHA' 1 8 3 '2D 1H-13C HSQC' 1 9 2 '3D HNCO' 1 10 2 '3D HNCA' 1 11 2 '3D HNCACB' 1 12 2 '3D CBCA(CO)NH' 1 13 2 '3D HBHA(CO)NH' 1 14 2 '3D C(CO)NH' 1 15 2 '3D H(CCO)NH' 1 16 3 '3D HCCH-COSY' 1 17 3 '3D HCCH-COSY' 1 18 3 '3D HCCH-TOCSY' 1 19 3 '3D 1H-13C NOESY' 1 20 2 '3D 1H-13C 1H-15N NOESY' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength 171 _pdbx_nmr_exptl_sample_conditions.pH 6.0 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature 293.15 _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.solvent_system ;0.35-0.7 mM [U-15N] Microtubule-associated protein light chain 3C (LC3C), 20 mM PIPES, 150 mM sodium chloride, 0.1 mM EDTA, 2% [U-2H] glycerol, 90% H2O, 10% D2O, 90% H2O/10% D2O ; 1 '90% H2O/10% D2O' ;0.35-0.7 mM [U-13C; U-15N] Microtubule-associated protein light chain 3C (LC3C), 20 mM PIPES, 150 mM sodium chloride, 0.1 mM EDTA, 2% [U-2H] glycerol, 90% H2O, 10% D2O, 90% H2O/10% D2O ; 2 '90% H2O/10% D2O' ;0.35-0.7 mM [U-13C; U-15N] Microtubule-associated protein light chain 3C (LC3C), 20 mM PIPES, 150 mM sodium chloride, 0.1 mM EDTA, 2% [U-2H] glycerol, 100% D2O, 100% D2O ; 3 '100% D2O' # loop_ _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.type 600 Bruker AVANCE 1 'Bruker Avance' 600 Varian INOVA 2 'Varian INOVA' # _pdbx_nmr_refine.entry_id 2NCN _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation 0.129 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 10 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2NCN _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation 0.25 _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation 3.77 _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 0.34 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method CING # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2NCN _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.ordinal ;Linge, O'Donoghue and Nilges ; 'structure solution' ARIA 2 1 ;Linge, O'Donoghue and Nilges ; refinement ARIA 2 2 'Johnson, One Moon Scientific' 'chemical shift assignment' NMRView ? 3 CCPN 'chemical shift assignment' Analysis ? 4 CCPN 'data analysis' Analysis ? 5 'Cornilescu, Delaglio and Bax' 'chemical shift assignment' Analysis ? 6 'Cornilescu, Delaglio and Bax' 'data analysis' Analysis ? 7 CCPN 'chemical shift assignment' Analysis ? 8 CCPN 'data analysis' Analysis ? 9 'Cornilescu, Delaglio and Bax' 'chemical shift assignment' Analysis ? 10 'Cornilescu, Delaglio and Bax' 'data analysis' Analysis ? 11 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 1.21 12 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 1.21 13 # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2NCN _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2NCN _struct.title 'Solution Structure of the Autophagy-Related Protein LC3C' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2NCN _struct_keywords.pdbx_keywords 'PROTEIN TRANSPORT' _struct_keywords.text 'PROTEIN TRANSPORT' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 20 ? PHE A 35 ? SER A 18 PHE A 33 1 ? 16 HELX_P HELX_P2 2 THR A 67 ? ARG A 78 ? THR A 65 ARG A 76 1 ? 12 HELX_P HELX_P3 3 THR A 102 ? LYS A 111 ? THR A 100 LYS A 109 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 4 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? parallel A 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 LYS A 59 ? PRO A 63 ? LYS A 57 PRO A 61 A 2 LYS A 38 ? ARG A 45 ? LYS A 36 ARG A 43 A 3 VAL A 117 ? ALA A 122 ? VAL A 115 ALA A 120 A 4 TYR A 88 ? VAL A 91 ? TYR A 86 VAL A 89 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O VAL A 62 ? O VAL A 60 N ILE A 39 ? N ILE A 37 A 2 3 N VAL A 42 ? N VAL A 40 O MET A 119 ? O MET A 117 A 3 4 O THR A 120 ? O THR A 118 N LEU A 90 ? N LEU A 88 # _atom_sites.entry_id 2NCN _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -1 -1 GLY GLY A . n A 1 2 SER 2 0 0 SER SER A . n A 1 3 MET 3 1 1 MET MET A . n A 1 4 PRO 4 2 2 PRO PRO A . n A 1 5 PRO 5 3 3 PRO PRO A . n A 1 6 PRO 6 4 4 PRO PRO A . n A 1 7 GLN 7 5 5 GLN GLN A . n A 1 8 LYS 8 6 6 LYS LYS A . n A 1 9 ILE 9 7 7 ILE ILE A . n A 1 10 PRO 10 8 8 PRO PRO A . n A 1 11 SER 11 9 9 SER SER A . n A 1 12 VAL 12 10 10 VAL VAL A . n A 1 13 ARG 13 11 11 ARG ARG A . n A 1 14 PRO 14 12 12 PRO PRO A . n A 1 15 PHE 15 13 13 PHE PHE A . n A 1 16 LYS 16 14 14 LYS LYS A . n A 1 17 GLN 17 15 15 GLN GLN A . n A 1 18 ARG 18 16 16 ARG ARG A . n A 1 19 LYS 19 17 17 LYS LYS A . n A 1 20 SER 20 18 18 SER SER A . n A 1 21 LEU 21 19 19 LEU LEU A . n A 1 22 ALA 22 20 20 ALA ALA A . n A 1 23 ILE 23 21 21 ILE ILE A . n A 1 24 ARG 24 22 22 ARG ARG A . n A 1 25 GLN 25 23 23 GLN GLN A . n A 1 26 GLU 26 24 24 GLU GLU A . n A 1 27 GLU 27 25 25 GLU GLU A . n A 1 28 VAL 28 26 26 VAL VAL A . n A 1 29 ALA 29 27 27 ALA ALA A . n A 1 30 GLY 30 28 28 GLY GLY A . n A 1 31 ILE 31 29 29 ILE ILE A . n A 1 32 ARG 32 30 30 ARG ARG A . n A 1 33 ALA 33 31 31 ALA ALA A . n A 1 34 LYS 34 32 32 LYS LYS A . n A 1 35 PHE 35 33 33 PHE PHE A . n A 1 36 PRO 36 34 34 PRO PRO A . n A 1 37 ASN 37 35 35 ASN ASN A . n A 1 38 LYS 38 36 36 LYS LYS A . n A 1 39 ILE 39 37 37 ILE ILE A . n A 1 40 PRO 40 38 38 PRO PRO A . n A 1 41 VAL 41 39 39 VAL VAL A . n A 1 42 VAL 42 40 40 VAL VAL A . n A 1 43 VAL 43 41 41 VAL VAL A . n A 1 44 GLU 44 42 42 GLU GLU A . n A 1 45 ARG 45 43 43 ARG ARG A . n A 1 46 TYR 46 44 44 TYR TYR A . n A 1 47 PRO 47 45 45 PRO PRO A . n A 1 48 ARG 48 46 46 ARG ARG A . n A 1 49 GLU 49 47 47 GLU GLU A . n A 1 50 THR 50 48 48 THR THR A . n A 1 51 PHE 51 49 49 PHE PHE A . n A 1 52 LEU 52 50 50 LEU LEU A . n A 1 53 PRO 53 51 51 PRO PRO A . n A 1 54 PRO 54 52 52 PRO PRO A . n A 1 55 LEU 55 53 53 LEU LEU A . n A 1 56 ASP 56 54 54 ASP ASP A . n A 1 57 LYS 57 55 55 LYS LYS A . n A 1 58 THR 58 56 56 THR THR A . n A 1 59 LYS 59 57 57 LYS LYS A . n A 1 60 PHE 60 58 58 PHE PHE A . n A 1 61 LEU 61 59 59 LEU LEU A . n A 1 62 VAL 62 60 60 VAL VAL A . n A 1 63 PRO 63 61 61 PRO PRO A . n A 1 64 GLN 64 62 62 GLN GLN A . n A 1 65 GLU 65 63 63 GLU GLU A . n A 1 66 LEU 66 64 64 LEU LEU A . n A 1 67 THR 67 65 65 THR THR A . n A 1 68 MET 68 66 66 MET MET A . n A 1 69 THR 69 67 67 THR THR A . n A 1 70 GLN 70 68 68 GLN GLN A . n A 1 71 PHE 71 69 69 PHE PHE A . n A 1 72 LEU 72 70 70 LEU LEU A . n A 1 73 SER 73 71 71 SER SER A . n A 1 74 ILE 74 72 72 ILE ILE A . n A 1 75 ILE 75 73 73 ILE ILE A . n A 1 76 ARG 76 74 74 ARG ARG A . n A 1 77 SER 77 75 75 SER SER A . n A 1 78 ARG 78 76 76 ARG ARG A . n A 1 79 MET 79 77 77 MET MET A . n A 1 80 VAL 80 78 78 VAL VAL A . n A 1 81 LEU 81 79 79 LEU LEU A . n A 1 82 ARG 82 80 80 ARG ARG A . n A 1 83 ALA 83 81 81 ALA ALA A . n A 1 84 THR 84 82 82 THR THR A . n A 1 85 GLU 85 83 83 GLU GLU A . n A 1 86 ALA 86 84 84 ALA ALA A . n A 1 87 PHE 87 85 85 PHE PHE A . n A 1 88 TYR 88 86 86 TYR TYR A . n A 1 89 LEU 89 87 87 LEU LEU A . n A 1 90 LEU 90 88 88 LEU LEU A . n A 1 91 VAL 91 89 89 VAL VAL A . n A 1 92 ASN 92 90 90 ASN ASN A . n A 1 93 ASN 93 91 91 ASN ASN A . n A 1 94 LYS 94 92 92 LYS LYS A . n A 1 95 SER 95 93 93 SER SER A . n A 1 96 LEU 96 94 94 LEU LEU A . n A 1 97 VAL 97 95 95 VAL VAL A . n A 1 98 SER 98 96 96 SER SER A . n A 1 99 MET 99 97 97 MET MET A . n A 1 100 SER 100 98 98 SER SER A . n A 1 101 ALA 101 99 99 ALA ALA A . n A 1 102 THR 102 100 100 THR THR A . n A 1 103 MET 103 101 101 MET MET A . n A 1 104 ALA 104 102 102 ALA ALA A . n A 1 105 GLU 105 103 103 GLU GLU A . n A 1 106 ILE 106 104 104 ILE ILE A . n A 1 107 TYR 107 105 105 TYR TYR A . n A 1 108 ARG 108 106 106 ARG ARG A . n A 1 109 ASP 109 107 107 ASP ASP A . n A 1 110 TYR 110 108 108 TYR TYR A . n A 1 111 LYS 111 109 109 LYS LYS A . n A 1 112 ASP 112 110 110 ASP ASP A . n A 1 113 GLU 113 111 111 GLU GLU A . n A 1 114 ASP 114 112 112 ASP ASP A . n A 1 115 GLY 115 113 113 GLY GLY A . n A 1 116 PHE 116 114 114 PHE PHE A . n A 1 117 VAL 117 115 115 VAL VAL A . n A 1 118 TYR 118 116 116 TYR TYR A . n A 1 119 MET 119 117 117 MET MET A . n A 1 120 THR 120 118 118 THR THR A . n A 1 121 TYR 121 119 119 TYR TYR A . n A 1 122 ALA 122 120 120 ALA ALA A . n A 1 123 SER 123 121 121 SER SER A . n A 1 124 GLN 124 122 122 GLN GLN A . n A 1 125 GLU 125 123 123 GLU GLU A . n A 1 126 THR 126 124 124 THR THR A . n A 1 127 PHE 127 125 125 PHE PHE A . n A 1 128 GLY 128 126 126 GLY GLY A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2017-04-19 2 'Structure model' 1 1 2020-09-23 3 'Structure model' 1 2 2023-06-14 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 3 'Structure model' 'Database references' 4 3 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' citation 2 2 'Structure model' citation_author 3 2 'Structure model' pdbx_nmr_spectrometer 4 2 'Structure model' struct_ref_seq_dif 5 3 'Structure model' database_2 6 3 'Structure model' pdbx_database_status # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_citation.country' 2 2 'Structure model' '_citation.journal_abbrev' 3 2 'Structure model' '_citation.journal_id_CSD' 4 2 'Structure model' '_citation.journal_id_ISSN' 5 2 'Structure model' '_citation.journal_volume' 6 2 'Structure model' '_citation.page_first' 7 2 'Structure model' '_citation.page_last' 8 2 'Structure model' '_citation.pdbx_database_id_DOI' 9 2 'Structure model' '_citation.pdbx_database_id_PubMed' 10 2 'Structure model' '_citation.title' 11 2 'Structure model' '_citation.year' 12 2 'Structure model' '_pdbx_nmr_spectrometer.model' 13 2 'Structure model' '_struct_ref_seq_dif.details' 14 3 'Structure model' '_database_2.pdbx_DOI' 15 3 'Structure model' '_database_2.pdbx_database_accession' 16 3 'Structure model' '_pdbx_database_status.status_code_nmr_data' # _pdbx_nmr_ensemble_rms.atom_type ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev ? _pdbx_nmr_ensemble_rms.bond_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.chain_range_begin ? _pdbx_nmr_ensemble_rms.chain_range_end ? _pdbx_nmr_ensemble_rms.coord_average_rmsd_method ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev ? _pdbx_nmr_ensemble_rms.covalent_bond_rms_dev_error ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev ? _pdbx_nmr_ensemble_rms.dihedral_angles_rms_dev_error ? _pdbx_nmr_ensemble_rms.distance_rms_dev 0.017 _pdbx_nmr_ensemble_rms.distance_rms_dev_error 0.002 _pdbx_nmr_ensemble_rms.entry_id 2NCN _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev ? _pdbx_nmr_ensemble_rms.improper_torsion_angle_rms_dev_error ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev ? _pdbx_nmr_ensemble_rms.peptide_planarity_rms_dev_error ? _pdbx_nmr_ensemble_rms.residue_range_begin ? _pdbx_nmr_ensemble_rms.residue_range_end ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id 'Microtubule-associated protein light chain 3C (LC3C)-1' ? 0.35-0.7 mM '[U-15N]' 1 PIPES-2 20 ? mM ? 1 'sodium chloride-3' 150 ? mM ? 1 EDTA-4 0.1 ? mM ? 1 glycerol-5 2 ? % '[U-2H]' 1 H2O-6 90 ? % ? 1 D2O-7 10 ? % ? 1 'Microtubule-associated protein light chain 3C (LC3C)-8' ? 0.35-0.7 mM '[U-13C; U-15N]' 2 PIPES-9 20 ? mM ? 2 'sodium chloride-10' 150 ? mM ? 2 EDTA-11 0.1 ? mM ? 2 glycerol-12 2 ? % '[U-2H]' 2 H2O-13 90 ? % ? 2 D2O-14 10 ? % ? 2 'Microtubule-associated protein light chain 3C (LC3C)-15' ? 0.35-0.7 mM '[U-13C; U-15N]' 3 PIPES-16 20 ? mM ? 3 'sodium chloride-17' 150 ? mM ? 3 EDTA-18 0.1 ? mM ? 3 glycerol-19 2 ? % '[U-2H]' 3 D2O-20 100 ? % ? 3 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2NCN _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count 102 _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 1162 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count 202 _pdbx_nmr_constraints.NOE_long_range_total_count 307 _pdbx_nmr_constraints.NOE_medium_range_total_count 266 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count 387 _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count 0 _pdbx_nmr_constraints.protein_other_angle_constraints_total_count 0 _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count 123 _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count 91 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HZ2 A LYS 17 ? ? OE1 A GLU 25 ? ? 1.59 2 2 O A LEU 88 ? ? H A THR 118 ? ? 1.59 3 3 OD2 A ASP 112 ? ? HH A TYR 116 ? ? 1.60 4 6 OE2 A GLU 25 ? ? HZ2 A LYS 57 ? ? 1.60 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 6 ? ? 61.68 82.28 2 1 PRO A 8 ? ? -90.67 -159.94 3 1 GLN A 15 ? ? -137.73 -77.11 4 1 ARG A 16 ? ? 46.98 77.99 5 1 LYS A 92 ? ? -136.81 -54.69 6 1 THR A 124 ? ? 72.13 -0.64 7 1 PHE A 125 ? ? 66.60 -66.65 8 2 PRO A 8 ? ? -59.66 96.69 9 2 PRO A 12 ? ? -58.41 103.07 10 2 PHE A 13 ? ? 58.45 78.33 11 2 ARG A 16 ? ? 65.32 176.95 12 2 THR A 48 ? ? -83.98 34.60 13 2 ALA A 84 ? ? 65.13 153.49 14 2 LYS A 92 ? ? -150.78 -67.80 15 3 PRO A 8 ? ? -67.28 89.73 16 3 SER A 9 ? ? -85.26 45.49 17 3 PRO A 12 ? ? -55.12 102.86 18 3 LYS A 14 ? ? 55.21 81.33 19 3 GLN A 15 ? ? -67.62 85.46 20 3 ARG A 16 ? ? 66.69 176.71 21 3 THR A 82 ? ? -92.49 36.49 22 3 ALA A 84 ? ? -173.32 98.61 23 3 ASN A 91 ? ? 67.75 -4.12 24 3 VAL A 95 ? ? 37.21 49.98 25 3 PHE A 125 ? ? 66.97 179.76 26 4 THR A 48 ? ? -134.90 -36.53 27 4 LYS A 92 ? ? -112.61 -72.43 28 5 PRO A 4 ? ? -65.35 88.55 29 5 PRO A 8 ? ? -80.49 37.02 30 5 SER A 9 ? ? -170.50 -69.55 31 5 VAL A 10 ? ? 68.86 102.68 32 5 ARG A 16 ? ? -176.53 -52.11 33 5 PHE A 49 ? ? 60.42 83.91 34 5 LYS A 92 ? ? -132.87 -58.56 35 5 VAL A 95 ? ? -69.07 87.22 36 5 SER A 96 ? ? -69.01 97.86 37 6 SER A 0 ? ? 60.38 60.12 38 6 PHE A 13 ? ? 55.00 72.13 39 6 PHE A 49 ? ? -161.31 68.24 40 6 THR A 82 ? ? -103.95 51.48 41 6 GLU A 83 ? ? 60.65 -164.28 42 6 ASN A 91 ? ? 59.70 18.91 43 6 LYS A 92 ? ? -135.51 -59.29 44 6 SER A 121 ? ? 70.48 139.09 45 6 PHE A 125 ? ? -130.36 -56.85 46 7 SER A 9 ? ? -175.24 -58.23 47 7 PHE A 13 ? ? -105.55 -83.74 48 7 GLN A 15 ? ? -85.55 44.91 49 7 ARG A 16 ? ? 71.32 -61.21 50 7 ALA A 81 ? ? -84.34 44.87 51 7 LYS A 92 ? ? -125.80 -70.30 52 7 SER A 121 ? ? -62.19 -76.07 53 7 PHE A 125 ? ? -120.50 -62.56 54 8 PRO A 4 ? ? -55.53 99.22 55 8 THR A 48 ? ? -141.04 -13.87 56 8 ALA A 81 ? ? -170.54 143.91 57 8 LYS A 92 ? ? -118.50 -70.13 58 8 GLU A 123 ? ? -150.79 -72.40 59 8 PHE A 125 ? ? 64.36 -163.63 60 9 LYS A 6 ? ? -100.98 73.95 61 9 ALA A 81 ? ? 65.09 77.92 62 9 THR A 82 ? ? -144.64 35.57 63 9 GLU A 83 ? ? 61.25 -161.78 64 9 SER A 121 ? ? -72.68 -147.94 65 9 PHE A 125 ? ? -162.14 -52.60 66 10 SER A 9 ? ? -84.60 47.17 67 10 LYS A 14 ? ? -140.19 43.50 68 10 GLN A 15 ? ? -69.44 91.88 69 10 THR A 82 ? ? 53.82 18.33 70 10 GLU A 83 ? ? -118.96 -169.26 71 10 LYS A 92 ? ? -109.73 -67.48 72 10 VAL A 95 ? ? 35.13 57.85 73 10 PHE A 125 ? ? 69.72 177.30 #