data_2ND5 # _entry.id 2ND5 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_code _database_2.database_id RCSB104715 RCSB 2ND5 PDB 26047 BMRB D_1000104715 WWPDB # _pdbx_database_related.db_id 26047 _pdbx_database_related.db_name BMRB _pdbx_database_related.content_type unspecified _pdbx_database_related.details . # _pdbx_database_status.deposit_site BMRB _pdbx_database_status.entry_id 2ND5 _pdbx_database_status.methods_development_category ? _pdbx_database_status.process_site PDBJ _pdbx_database_status.recvd_initial_deposition_date 2016-05-05 _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code REL _pdbx_database_status.status_code_mr REL _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs REL _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hattori, Y.' 1 'Sebera, J.' 2 'Sychrovsky, V.' 3 'Furuita, K.' 4 'Sugiki, T.' 5 'Ohki, I.' 6 'Ikegami, T.' 7 'Kobayashi, N.' 8 'Tanaka, Y.' 9 'Fujiwara, T.' 10 'Kojima, C.' 11 # _citation.id primary _citation.title 'NMR Observation of Protein Surface Salt Bridges at Neutral pH' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hattori, Y.' 1 primary 'Sebera, J.' 2 primary 'Sychrovsky, V.' 3 primary 'Furuita, K.' 4 primary 'Sugiki, T.' 5 primary 'Ohki, I.' 6 primary 'Ikegami, T.' 7 primary 'Kobayashi, N.' 8 primary 'Tanaka, Y.' 9 primary 'Fujiwara, T.' 10 primary 'Kojima, C.' 11 # _entity.id 1 _entity.type polymer _entity.src_method man _entity.pdbx_description 'Peptidyl-prolyl cis-trans isomerase FKBP1A' _entity.formula_weight 12425.317 _entity.pdbx_number_of_molecules 1 _entity.pdbx_ec 5.2.1.8 _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.details ? # _entity_name_com.entity_id 1 _entity_name_com.name 'FKBP-12, Immunophilin FKBP12' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GPSMGVQVETISPGDGRTFP(MLY)RGQTCVVHYTGMLEDG(MLY)(MLY)FDSSRDRN(MLY)PF(MLY)FMLG(MLY) QEVIRGWEEGVAQMSVGQRA(MLY)LTISPDYAYGATGHPGIIPPHATLVFDVELL(MLY)LE ; _entity_poly.pdbx_seq_one_letter_code_can ;GPSMGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTI SPDYAYGATGHPGIIPPHATLVFDVELLKLE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 SER n 1 4 MET n 1 5 GLY n 1 6 VAL n 1 7 GLN n 1 8 VAL n 1 9 GLU n 1 10 THR n 1 11 ILE n 1 12 SER n 1 13 PRO n 1 14 GLY n 1 15 ASP n 1 16 GLY n 1 17 ARG n 1 18 THR n 1 19 PHE n 1 20 PRO n 1 21 MLY n 1 22 ARG n 1 23 GLY n 1 24 GLN n 1 25 THR n 1 26 CYS n 1 27 VAL n 1 28 VAL n 1 29 HIS n 1 30 TYR n 1 31 THR n 1 32 GLY n 1 33 MET n 1 34 LEU n 1 35 GLU n 1 36 ASP n 1 37 GLY n 1 38 MLY n 1 39 MLY n 1 40 PHE n 1 41 ASP n 1 42 SER n 1 43 SER n 1 44 ARG n 1 45 ASP n 1 46 ARG n 1 47 ASN n 1 48 MLY n 1 49 PRO n 1 50 PHE n 1 51 MLY n 1 52 PHE n 1 53 MET n 1 54 LEU n 1 55 GLY n 1 56 MLY n 1 57 GLN n 1 58 GLU n 1 59 VAL n 1 60 ILE n 1 61 ARG n 1 62 GLY n 1 63 TRP n 1 64 GLU n 1 65 GLU n 1 66 GLY n 1 67 VAL n 1 68 ALA n 1 69 GLN n 1 70 MET n 1 71 SER n 1 72 VAL n 1 73 GLY n 1 74 GLN n 1 75 ARG n 1 76 ALA n 1 77 MLY n 1 78 LEU n 1 79 THR n 1 80 ILE n 1 81 SER n 1 82 PRO n 1 83 ASP n 1 84 TYR n 1 85 ALA n 1 86 TYR n 1 87 GLY n 1 88 ALA n 1 89 THR n 1 90 GLY n 1 91 HIS n 1 92 PRO n 1 93 GLY n 1 94 ILE n 1 95 ILE n 1 96 PRO n 1 97 PRO n 1 98 HIS n 1 99 ALA n 1 100 THR n 1 101 LEU n 1 102 VAL n 1 103 PHE n 1 104 ASP n 1 105 VAL n 1 106 GLU n 1 107 LEU n 1 108 LEU n 1 109 MLY n 1 110 LEU n 1 111 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'FKBP1A, FKBP1, FKBP12' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type vector _entity_src_gen.pdbx_host_org_vector pGEX _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code FKB1A_HUMAN _struct_ref.pdbx_db_accession P62942 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MGVQVETISPGDGRTFPKRGQTCVVHYTGMLEDGKKFDSSRDRNKPFKFMLGKQEVIRGWEEGVAQMSVGQRAKLTISPD YAYGATGHPGIIPPHATLVFDVELLKLE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2ND5 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 4 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 111 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P62942 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 108 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 0 _struct_ref_seq.pdbx_auth_seq_align_end 107 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2ND5 GLY A 1 ? UNP P62942 ? ? 'EXPRESSION TAG' -3 1 1 2ND5 PRO A 2 ? UNP P62942 ? ? 'EXPRESSION TAG' -2 2 1 2ND5 SER A 3 ? UNP P62942 ? ? 'EXPRESSION TAG' -1 3 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MLY 'L-peptide linking' n N-DIMETHYL-LYSINE ? 'C8 H18 N2 O2' 174.241 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.solution_id _pdbx_nmr_exptl.type 1 1 1 '2D 1H-15N HSQC' 1 2 1 '2D 1H-13C HSQC aliphatic' 1 3 1 '2D 1H-13C HSQC aromatic' 1 4 1 '2D 1H-1H NOESY' 1 5 1 '3D CBCA(CO)NH' 1 6 1 '3D HNCACB' 1 7 1 '3D HN(CA)CO' 1 8 1 '3D HNCO' 1 9 1 '3D HBHA(CO)NH' 1 10 1 '3D C(CO)NH' 1 11 1 '3D H(CCO)NH' 1 12 1 '3D HCCH-TOCSY' 1 13 1 '3D 1H-15N TOCSY' 1 14 1 '3D 1H-15N NOESY' 1 15 1 '3D 1H-13C NOESY aliphatic' 1 16 1 '3D 1H-13C NOESY aromatic' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pH 6.8 _pdbx_nmr_exptl_sample_conditions.pressure ? _pdbx_nmr_exptl_sample_conditions.pressure_units ? _pdbx_nmr_exptl_sample_conditions.temperature 303 # _pdbx_nmr_sample_details.contents '1.2 mM [U-99% 13C; U-99% 15N] entity-1, 30 mM sodium chloride-2, 3 mM DTT-3, 95% H2O/5% D2O' _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.solvent_system '95% H2O/5% D2O' # _pdbx_nmr_spectrometer.field_strength 800 _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.model 'Avance III' _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.type 'Bruker Avance III' # _pdbx_nmr_refine.entry_id 2ND5 _pdbx_nmr_refine.method 'simulated annealing' _pdbx_nmr_refine.details ? _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.conformers_calculated_total_number 100 _pdbx_nmr_ensemble.conformers_submitted_total_number 20 _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.entry_id 2ND5 _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation 2.4 _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation 6.0 _pdbx_nmr_ensemble.representative_conformer 1 _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.entry_id 2ND5 _pdbx_nmr_representative.selection_criteria 'lowest energy' # loop_ _pdbx_nmr_software.authors _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.ordinal _pdbx_nmr_software.version 'Delaglio, Grzesiek, Vuister, Zhu, Pfeifer and Bax' processing NMRPipe 1 ? 'Kobayashi, Naohiro' 'peak picking' MagRO-NMRView 2 ? 'Kobayashi, Naohiro' 'chemical shift assignment' MagRO-NMRView 3 ? 'Kobayashi, Naohiro' 'data analysis' MagRO-NMRView 4 ? 'Guntert, Mumenthaler and Wuthrich' 'chemical shift assignment' CYANA 5 2.1 'Guntert, Mumenthaler and Wuthrich' 'structure solution' CYANA 6 2.1 'Brunger, Adams, Clore, Gros, Nilges and Read' refinement CNS 7 ? 'Brunger, Adams, Clore, Gros, Nilges and Read' 'structure solution' CNS 8 ? # _exptl.absorpt_coefficient_mu ? _exptl.absorpt_correction_T_max ? _exptl.absorpt_correction_T_min ? _exptl.absorpt_correction_type ? _exptl.absorpt_process_details ? _exptl.crystals_number ? _exptl.details ? _exptl.entry_id 2ND5 _exptl.method 'SOLUTION NMR' _exptl.method_details ? # _struct.entry_id 2ND5 _struct.title 'Lysine dimethylated FKBP12' _struct.pdbx_descriptor 'Peptidyl-prolyl cis-trans isomerase FKBP1A (E.C.5.2.1.8)' _struct.pdbx_model_details 'lowest energy, model1' _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2ND5 _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text 'lysine, salt bridge, methylation, ISOMERASE' # _struct_asym.id A _struct_asym.pdbx_blank_PDB_chainid_flag N _struct_asym.pdbx_modified N _struct_asym.entity_id 1 _struct_asym.details ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ARG A 44 ? ASN A 47 ? ARG A 40 ASN A 43 5 ? 4 HELX_P HELX_P2 2 ILE A 60 ? VAL A 67 ? ILE A 56 VAL A 63 1 ? 8 HELX_P HELX_P3 3 ALA A 68 ? MET A 70 ? ALA A 64 MET A 66 5 ? 3 HELX_P HELX_P4 4 SER A 81 ? TYR A 86 ? SER A 77 TYR A 82 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A PRO 20 C ? ? ? 1_555 A MLY 21 N ? ? A PRO 16 A MLY 17 1_555 ? ? ? ? ? ? ? 1.337 ? covale2 covale ? ? A MLY 21 C ? ? ? 1_555 A ARG 22 N ? ? A MLY 17 A ARG 18 1_555 ? ? ? ? ? ? ? 1.340 ? covale3 covale ? ? A GLY 37 C ? ? ? 1_555 A MLY 38 N ? ? A GLY 33 A MLY 34 1_555 ? ? ? ? ? ? ? 1.340 ? covale4 covale ? ? A MLY 38 C ? ? ? 1_555 A MLY 39 N ? ? A MLY 34 A MLY 35 1_555 ? ? ? ? ? ? ? 1.343 ? covale5 covale ? ? A MLY 39 C ? ? ? 1_555 A PHE 40 N ? ? A MLY 35 A PHE 36 1_555 ? ? ? ? ? ? ? 1.328 ? covale6 covale ? ? A ASN 47 C ? ? ? 1_555 A MLY 48 N ? ? A ASN 43 A MLY 44 1_555 ? ? ? ? ? ? ? 1.346 ? covale7 covale ? ? A MLY 48 C ? ? ? 1_555 A PRO 49 N ? ? A MLY 44 A PRO 45 1_555 ? ? ? ? ? ? ? 1.370 ? covale8 covale ? ? A PHE 50 C ? ? ? 1_555 A MLY 51 N ? ? A PHE 46 A MLY 47 1_555 ? ? ? ? ? ? ? 1.336 ? covale9 covale ? ? A MLY 51 C ? ? ? 1_555 A PHE 52 N ? ? A MLY 47 A PHE 48 1_555 ? ? ? ? ? ? ? 1.342 ? covale10 covale ? ? A GLY 55 C ? ? ? 1_555 A MLY 56 N ? ? A GLY 51 A MLY 52 1_555 ? ? ? ? ? ? ? 1.345 ? covale11 covale ? ? A MLY 56 C ? ? ? 1_555 A GLN 57 N ? ? A MLY 52 A GLN 53 1_555 ? ? ? ? ? ? ? 1.350 ? covale12 covale ? ? A ALA 76 C ? ? ? 1_555 A MLY 77 N ? ? A ALA 72 A MLY 73 1_555 ? ? ? ? ? ? ? 1.342 ? covale13 covale ? ? A MLY 77 C ? ? ? 1_555 A LEU 78 N ? ? A MLY 73 A LEU 74 1_555 ? ? ? ? ? ? ? 1.336 ? covale14 covale ? ? A LEU 108 C ? ? ? 1_555 A MLY 109 N ? ? A LEU 104 A MLY 105 1_555 ? ? ? ? ? ? ? 1.345 ? covale15 covale ? ? A MLY 109 C ? ? ? 1_555 A LEU 110 N ? ? A MLY 105 A LEU 106 1_555 ? ? ? ? ? ? ? 1.336 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 VAL A 6 ? SER A 12 ? VAL A 2 SER A 8 A 2 ARG A 75 ? ILE A 80 ? ARG A 71 ILE A 76 A 3 LEU A 101 ? LEU A 110 ? LEU A 97 LEU A 106 A 4 THR A 31 ? LEU A 34 ? THR A 27 LEU A 30 A 5 MLY A 39 ? SER A 42 ? MLY A 35 SER A 38 B 1 VAL A 6 ? SER A 12 ? VAL A 2 SER A 8 B 2 ARG A 75 ? ILE A 80 ? ARG A 71 ILE A 76 B 3 LEU A 101 ? LEU A 110 ? LEU A 97 LEU A 106 B 4 THR A 25 ? HIS A 29 ? THR A 21 HIS A 25 B 5 PHE A 50 ? MET A 53 ? PHE A 46 MET A 49 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 11 ? N ILE A 7 O ARG A 75 ? O ARG A 71 A 2 3 N ILE A 80 ? N ILE A 76 O LEU A 101 ? O LEU A 97 A 3 4 O VAL A 102 ? O VAL A 98 N MET A 33 ? N MET A 29 A 4 5 N GLY A 32 ? N GLY A 28 O ASP A 41 ? O ASP A 37 B 1 2 N ILE A 11 ? N ILE A 7 O ARG A 75 ? O ARG A 71 B 2 3 N ILE A 80 ? N ILE A 76 O LEU A 101 ? O LEU A 97 B 3 4 O MLY A 109 ? O MLY A 105 N VAL A 27 ? N VAL A 23 B 4 5 N VAL A 28 ? N VAL A 24 O PHE A 50 ? O PHE A 46 # _atom_sites.entry_id 2ND5 _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 -3 GLY GLY A . n A 1 2 PRO 2 -2 -2 PRO PRO A . n A 1 3 SER 3 -1 -1 SER SER A . n A 1 4 MET 4 0 0 MET MET A . n A 1 5 GLY 5 1 1 GLY GLY A . n A 1 6 VAL 6 2 2 VAL VAL A . n A 1 7 GLN 7 3 3 GLN GLN A . n A 1 8 VAL 8 4 4 VAL VAL A . n A 1 9 GLU 9 5 5 GLU GLU A . n A 1 10 THR 10 6 6 THR THR A . n A 1 11 ILE 11 7 7 ILE ILE A . n A 1 12 SER 12 8 8 SER SER A . n A 1 13 PRO 13 9 9 PRO PRO A . n A 1 14 GLY 14 10 10 GLY GLY A . n A 1 15 ASP 15 11 11 ASP ASP A . n A 1 16 GLY 16 12 12 GLY GLY A . n A 1 17 ARG 17 13 13 ARG ARG A . n A 1 18 THR 18 14 14 THR THR A . n A 1 19 PHE 19 15 15 PHE PHE A . n A 1 20 PRO 20 16 16 PRO PRO A . n A 1 21 MLY 21 17 17 MLY MLY A . n A 1 22 ARG 22 18 18 ARG ARG A . n A 1 23 GLY 23 19 19 GLY GLY A . n A 1 24 GLN 24 20 20 GLN GLN A . n A 1 25 THR 25 21 21 THR THR A . n A 1 26 CYS 26 22 22 CYS CYS A . n A 1 27 VAL 27 23 23 VAL VAL A . n A 1 28 VAL 28 24 24 VAL VAL A . n A 1 29 HIS 29 25 25 HIS HIS A . n A 1 30 TYR 30 26 26 TYR TYR A . n A 1 31 THR 31 27 27 THR THR A . n A 1 32 GLY 32 28 28 GLY GLY A . n A 1 33 MET 33 29 29 MET MET A . n A 1 34 LEU 34 30 30 LEU LEU A . n A 1 35 GLU 35 31 31 GLU GLU A . n A 1 36 ASP 36 32 32 ASP ASP A . n A 1 37 GLY 37 33 33 GLY GLY A . n A 1 38 MLY 38 34 34 MLY MLY A . n A 1 39 MLY 39 35 35 MLY MLY A . n A 1 40 PHE 40 36 36 PHE PHE A . n A 1 41 ASP 41 37 37 ASP ASP A . n A 1 42 SER 42 38 38 SER SER A . n A 1 43 SER 43 39 39 SER SER A . n A 1 44 ARG 44 40 40 ARG ARG A . n A 1 45 ASP 45 41 41 ASP ASP A . n A 1 46 ARG 46 42 42 ARG ARG A . n A 1 47 ASN 47 43 43 ASN ASN A . n A 1 48 MLY 48 44 44 MLY MLY A . n A 1 49 PRO 49 45 45 PRO PRO A . n A 1 50 PHE 50 46 46 PHE PHE A . n A 1 51 MLY 51 47 47 MLY MLY A . n A 1 52 PHE 52 48 48 PHE PHE A . n A 1 53 MET 53 49 49 MET MET A . n A 1 54 LEU 54 50 50 LEU LEU A . n A 1 55 GLY 55 51 51 GLY GLY A . n A 1 56 MLY 56 52 52 MLY MLY A . n A 1 57 GLN 57 53 53 GLN GLN A . n A 1 58 GLU 58 54 54 GLU GLU A . n A 1 59 VAL 59 55 55 VAL VAL A . n A 1 60 ILE 60 56 56 ILE ILE A . n A 1 61 ARG 61 57 57 ARG ARG A . n A 1 62 GLY 62 58 58 GLY GLY A . n A 1 63 TRP 63 59 59 TRP TRP A . n A 1 64 GLU 64 60 60 GLU GLU A . n A 1 65 GLU 65 61 61 GLU GLU A . n A 1 66 GLY 66 62 62 GLY GLY A . n A 1 67 VAL 67 63 63 VAL VAL A . n A 1 68 ALA 68 64 64 ALA ALA A . n A 1 69 GLN 69 65 65 GLN GLN A . n A 1 70 MET 70 66 66 MET MET A . n A 1 71 SER 71 67 67 SER SER A . n A 1 72 VAL 72 68 68 VAL VAL A . n A 1 73 GLY 73 69 69 GLY GLY A . n A 1 74 GLN 74 70 70 GLN GLN A . n A 1 75 ARG 75 71 71 ARG ARG A . n A 1 76 ALA 76 72 72 ALA ALA A . n A 1 77 MLY 77 73 73 MLY MLY A . n A 1 78 LEU 78 74 74 LEU LEU A . n A 1 79 THR 79 75 75 THR THR A . n A 1 80 ILE 80 76 76 ILE ILE A . n A 1 81 SER 81 77 77 SER SER A . n A 1 82 PRO 82 78 78 PRO PRO A . n A 1 83 ASP 83 79 79 ASP ASP A . n A 1 84 TYR 84 80 80 TYR TYR A . n A 1 85 ALA 85 81 81 ALA ALA A . n A 1 86 TYR 86 82 82 TYR TYR A . n A 1 87 GLY 87 83 83 GLY GLY A . n A 1 88 ALA 88 84 84 ALA ALA A . n A 1 89 THR 89 85 85 THR THR A . n A 1 90 GLY 90 86 86 GLY GLY A . n A 1 91 HIS 91 87 87 HIS HIS A . n A 1 92 PRO 92 88 88 PRO PRO A . n A 1 93 GLY 93 89 89 GLY GLY A . n A 1 94 ILE 94 90 90 ILE ILE A . n A 1 95 ILE 95 91 91 ILE ILE A . n A 1 96 PRO 96 92 92 PRO PRO A . n A 1 97 PRO 97 93 93 PRO PRO A . n A 1 98 HIS 98 94 94 HIS HIS A . n A 1 99 ALA 99 95 95 ALA ALA A . n A 1 100 THR 100 96 96 THR THR A . n A 1 101 LEU 101 97 97 LEU LEU A . n A 1 102 VAL 102 98 98 VAL VAL A . n A 1 103 PHE 103 99 99 PHE PHE A . n A 1 104 ASP 104 100 100 ASP ASP A . n A 1 105 VAL 105 101 101 VAL VAL A . n A 1 106 GLU 106 102 102 GLU GLU A . n A 1 107 LEU 107 103 103 LEU LEU A . n A 1 108 LEU 108 104 104 LEU LEU A . n A 1 109 MLY 109 105 105 MLY MLY A . n A 1 110 LEU 110 106 106 LEU LEU A . n A 1 111 GLU 111 107 107 GLU GLU A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MLY 21 A MLY 17 ? LYS N-DIMETHYL-LYSINE 2 A MLY 38 A MLY 34 ? LYS N-DIMETHYL-LYSINE 3 A MLY 39 A MLY 35 ? LYS N-DIMETHYL-LYSINE 4 A MLY 48 A MLY 44 ? LYS N-DIMETHYL-LYSINE 5 A MLY 51 A MLY 47 ? LYS N-DIMETHYL-LYSINE 6 A MLY 56 A MLY 52 ? LYS N-DIMETHYL-LYSINE 7 A MLY 77 A MLY 73 ? LYS N-DIMETHYL-LYSINE 8 A MLY 109 A MLY 105 ? LYS N-DIMETHYL-LYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _pdbx_audit_revision_history.ordinal 1 _pdbx_audit_revision_history.data_content_type 'Structure model' _pdbx_audit_revision_history.major_revision 1 _pdbx_audit_revision_history.minor_revision 0 _pdbx_audit_revision_history.revision_date 2017-05-17 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_nmr_exptl_sample.component _pdbx_nmr_exptl_sample.concentration _pdbx_nmr_exptl_sample.concentration_range _pdbx_nmr_exptl_sample.concentration_units _pdbx_nmr_exptl_sample.isotopic_labeling _pdbx_nmr_exptl_sample.solution_id entity-1 1.2 ? mM '[U-99% 13C; U-99% 15N]' 1 'sodium chloride-2' 30 ? mM ? 1 DTT-3 3 ? mM ? 1 # _pdbx_nmr_constraints.disulfide_bond_constraints_total_count ? _pdbx_nmr_constraints.entry_id 2ND5 _pdbx_nmr_constraints.hydrogen_bond_constraints_total_count ? _pdbx_nmr_constraints.NA_alpha-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_beta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_chi-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_delta-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_epsilon-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_gamma-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_other-angle_constraints_total_count ? _pdbx_nmr_constraints.NA_sugar_pucker_constraints_total_count ? _pdbx_nmr_constraints.NOE_constraints_total 3557 _pdbx_nmr_constraints.NOE_interentity_total_count ? _pdbx_nmr_constraints.NOE_interproton_distance_evaluation ? _pdbx_nmr_constraints.NOE_intraresidue_total_count ? _pdbx_nmr_constraints.NOE_long_range_total_count 1461 _pdbx_nmr_constraints.NOE_medium_range_total_count 555 _pdbx_nmr_constraints.NOE_motional_averaging_correction ? _pdbx_nmr_constraints.NOE_pseudoatom_corrections ? _pdbx_nmr_constraints.NOE_sequential_total_count ? _pdbx_nmr_constraints.protein_chi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_other_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_phi_angle_constraints_total_count ? _pdbx_nmr_constraints.protein_psi_angle_constraints_total_count ? # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A -1 ? ? 62.87 126.56 2 1 MET A 0 ? ? 63.13 125.86 3 1 LEU A 30 ? ? -57.53 172.01 4 1 ASP A 37 ? ? -179.58 110.50 5 1 TYR A 82 ? ? -134.21 -51.21 6 1 THR A 85 ? ? -100.44 -60.35 7 2 SER A -1 ? ? -131.43 -47.84 8 2 MET A 0 ? ? -135.95 -45.81 9 2 LEU A 30 ? ? -56.16 172.12 10 2 ASP A 37 ? ? 176.54 111.47 11 2 TYR A 82 ? ? -132.61 -53.46 12 2 THR A 85 ? ? -100.10 -60.38 13 3 LEU A 30 ? ? -56.25 170.42 14 3 ASP A 37 ? ? 175.50 111.36 15 3 TYR A 82 ? ? 75.25 -50.70 16 3 THR A 85 ? ? -97.88 -60.19 17 4 MET A 0 ? ? 46.52 125.58 18 4 LEU A 30 ? ? -57.31 170.85 19 4 ASP A 37 ? ? -167.18 111.54 20 4 TYR A 82 ? ? -134.55 -51.98 21 4 THR A 85 ? ? -100.21 -60.37 22 5 LEU A 30 ? ? -57.25 171.10 23 5 ASP A 37 ? ? -166.81 111.62 24 5 TYR A 82 ? ? -135.10 -52.09 25 5 THR A 85 ? ? -100.07 -60.32 26 6 SER A -1 ? ? 63.69 137.48 27 6 LEU A 30 ? ? -58.50 170.96 28 6 ASP A 37 ? ? -165.46 111.55 29 6 TYR A 82 ? ? -133.85 -54.00 30 6 THR A 85 ? ? -100.63 -60.33 31 7 SER A -1 ? ? 61.91 118.37 32 7 LEU A 30 ? ? -57.50 170.77 33 7 ASP A 37 ? ? -161.68 111.51 34 7 TYR A 82 ? ? -134.81 -52.71 35 7 THR A 85 ? ? -100.03 -60.23 36 8 LEU A 30 ? ? -57.19 172.12 37 8 ASP A 37 ? ? 179.98 110.45 38 8 TYR A 82 ? ? -133.46 -50.99 39 8 THR A 85 ? ? -99.51 -60.33 40 9 LEU A 30 ? ? -57.04 170.18 41 9 ASP A 37 ? ? -160.89 111.47 42 9 TYR A 82 ? ? -134.59 -52.51 43 9 THR A 85 ? ? -100.10 -60.33 44 10 LEU A 30 ? ? -55.52 171.83 45 10 ASP A 37 ? ? 177.00 111.34 46 10 TYR A 82 ? ? -132.17 -53.66 47 10 THR A 85 ? ? -100.13 -60.38 48 11 LEU A 30 ? ? -57.18 172.03 49 11 ASP A 37 ? ? -179.70 110.50 50 11 GLN A 53 ? ? 70.17 30.95 51 11 TYR A 82 ? ? -133.68 -51.02 52 11 THR A 85 ? ? -99.54 -60.38 53 12 MET A 0 ? ? 71.09 -49.08 54 12 LEU A 30 ? ? -57.04 170.12 55 12 ASP A 37 ? ? -161.62 111.54 56 12 TYR A 82 ? ? -133.51 -52.43 57 12 THR A 85 ? ? -100.29 -60.36 58 13 LEU A 30 ? ? -54.79 170.53 59 13 ASP A 37 ? ? 170.84 115.97 60 13 ALA A 84 ? ? 64.38 -12.43 61 13 THR A 85 ? ? -98.26 -60.22 62 14 SER A -1 ? ? 63.25 128.94 63 14 LEU A 30 ? ? -58.49 172.29 64 14 ASP A 37 ? ? 179.18 110.96 65 14 TYR A 82 ? ? -133.31 -51.16 66 14 THR A 85 ? ? -99.51 -60.39 67 15 LEU A 30 ? ? -57.96 171.53 68 15 ASP A 37 ? ? -163.44 111.57 69 15 TYR A 82 ? ? -133.52 -53.85 70 15 THR A 85 ? ? -102.63 -60.38 71 16 LEU A 30 ? ? -57.62 170.90 72 16 ASP A 37 ? ? -166.55 111.59 73 16 TYR A 82 ? ? -134.96 -52.48 74 16 THR A 85 ? ? -100.12 -60.43 75 17 LEU A 30 ? ? -56.38 172.34 76 17 ASP A 37 ? ? 175.80 110.70 77 17 TYR A 82 ? ? -134.43 -50.85 78 17 THR A 85 ? ? -100.02 -60.38 79 18 LEU A 30 ? ? -54.74 171.41 80 18 ASP A 37 ? ? 176.16 111.15 81 18 TYR A 82 ? ? -134.50 -50.84 82 18 THR A 85 ? ? -99.53 -60.38 83 19 SER A -1 ? ? 61.74 119.58 84 19 LEU A 30 ? ? -57.23 170.41 85 19 ASP A 37 ? ? -161.55 111.63 86 19 TYR A 82 ? ? -134.94 -51.99 87 19 THR A 85 ? ? -100.06 -60.36 88 20 LEU A 30 ? ? -58.50 171.40 89 20 ASP A 37 ? ? -160.98 113.42 90 20 TYR A 82 ? ? -133.40 -52.08 91 20 THR A 85 ? ? -100.61 -60.37 #