HEADER ISOMERASE 05-MAY-16 2ND5 TITLE LYSINE DIMETHYLATED FKBP12 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKBP1A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: FKBP-12, IMMUNOPHILIN FKBP12; COMPND 5 EC: 5.2.1.8; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: FKBP1A, FKBP1, FKBP12; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: VECTOR; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: PGEX KEYWDS LYSINE, SALT BRIDGE, METHYLATION, ISOMERASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR Y.HATTORI,J.SEBERA,V.SYCHROVSKY,K.FURUITA,T.SUGIKI,I.OHKI,T.IKEGAMI, AUTHOR 2 N.KOBAYASHI,Y.TANAKA,T.FUJIWARA,C.KOJIMA REVDAT 2 26-MAR-25 2ND5 1 REMARK SEQADV LINK REVDAT 1 17-MAY-17 2ND5 0 JRNL AUTH Y.HATTORI,J.SEBERA,V.SYCHROVSKY,K.FURUITA,T.SUGIKI,I.OHKI, JRNL AUTH 2 T.IKEGAMI,N.KOBAYASHI,Y.TANAKA,T.FUJIWARA,C.KOJIMA JRNL TITL NMR OBSERVATION OF PROTEIN SURFACE SALT BRIDGES AT NEUTRAL JRNL TITL 2 PH JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE, CNS REMARK 3 AUTHORS : DELAGLIO, GRZESIEK, VUISTER, ZHU, PFEIFER AND BAX REMARK 3 (NMRPIPE), BRUNGER, ADAMS, CLORE, GROS, NILGES AND REMARK 3 READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ND5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 13-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000104715. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : 1.2 MM [U-99% 13C; U-99% 15N] REMARK 210 ENTITY-1, 30 MM SODIUM CHLORIDE- REMARK 210 2, 3 MM DTT-3, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 2D 1H-13C HSQC REMARK 210 ALIPHATIC; 2D 1H-13C HSQC REMARK 210 AROMATIC; 2D 1H-1H NOESY; 3D REMARK 210 CBCA(CO)NH; 3D HNCACB; 3D HN(CA) REMARK 210 CO; 3D HNCO; 3D HBHA(CO)NH; 3D REMARK 210 C(CO)NH; 3D H(CCO)NH; 3D HCCH- REMARK 210 TOCSY; 3D 1H-15N TOCSY; 3D 1H- REMARK 210 15N NOESY; 3D 1H-13C NOESY REMARK 210 ALIPHATIC; 3D 1H-13C NOESY REMARK 210 AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE III REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : MAGRO-NMRVIEW, CYANA 2.1, CNS REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 SER A -1 126.56 62.87 REMARK 500 1 MET A 0 125.86 63.13 REMARK 500 1 LEU A 30 172.01 -57.53 REMARK 500 1 ASP A 37 110.50 -179.58 REMARK 500 1 TYR A 82 -51.21 -134.21 REMARK 500 1 THR A 85 -60.35 -100.44 REMARK 500 2 SER A -1 -47.84 -131.43 REMARK 500 2 MET A 0 -45.81 -135.95 REMARK 500 2 LEU A 30 172.12 -56.16 REMARK 500 2 ASP A 37 111.47 176.54 REMARK 500 2 TYR A 82 -53.46 -132.61 REMARK 500 2 THR A 85 -60.38 -100.10 REMARK 500 3 LEU A 30 170.42 -56.25 REMARK 500 3 ASP A 37 111.36 175.50 REMARK 500 3 TYR A 82 -50.70 75.25 REMARK 500 3 THR A 85 -60.19 -97.88 REMARK 500 4 MET A 0 125.58 46.52 REMARK 500 4 LEU A 30 170.85 -57.31 REMARK 500 4 ASP A 37 111.54 -167.18 REMARK 500 4 TYR A 82 -51.98 -134.55 REMARK 500 4 THR A 85 -60.37 -100.21 REMARK 500 5 LEU A 30 171.10 -57.25 REMARK 500 5 ASP A 37 111.62 -166.81 REMARK 500 5 TYR A 82 -52.09 -135.10 REMARK 500 5 THR A 85 -60.32 -100.07 REMARK 500 6 SER A -1 137.48 63.69 REMARK 500 6 LEU A 30 170.96 -58.50 REMARK 500 6 ASP A 37 111.55 -165.46 REMARK 500 6 TYR A 82 -54.00 -133.85 REMARK 500 6 THR A 85 -60.33 -100.63 REMARK 500 7 SER A -1 118.37 61.91 REMARK 500 7 LEU A 30 170.77 -57.50 REMARK 500 7 ASP A 37 111.51 -161.68 REMARK 500 7 TYR A 82 -52.71 -134.81 REMARK 500 7 THR A 85 -60.23 -100.03 REMARK 500 8 LEU A 30 172.12 -57.19 REMARK 500 8 ASP A 37 110.45 179.98 REMARK 500 8 TYR A 82 -50.99 -133.46 REMARK 500 8 THR A 85 -60.33 -99.51 REMARK 500 9 LEU A 30 170.18 -57.04 REMARK 500 9 ASP A 37 111.47 -160.89 REMARK 500 9 TYR A 82 -52.51 -134.59 REMARK 500 9 THR A 85 -60.33 -100.10 REMARK 500 10 LEU A 30 171.83 -55.52 REMARK 500 10 ASP A 37 111.34 177.00 REMARK 500 10 TYR A 82 -53.66 -132.17 REMARK 500 10 THR A 85 -60.38 -100.13 REMARK 500 11 LEU A 30 172.03 -57.18 REMARK 500 11 ASP A 37 110.50 -179.70 REMARK 500 11 GLN A 53 30.95 70.17 REMARK 500 REMARK 500 THIS ENTRY HAS 91 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26047 RELATED DB: BMRB DBREF 2ND5 A 0 107 UNP P62942 FKB1A_HUMAN 1 108 SEQADV 2ND5 GLY A -3 UNP P62942 EXPRESSION TAG SEQADV 2ND5 PRO A -2 UNP P62942 EXPRESSION TAG SEQADV 2ND5 SER A -1 UNP P62942 EXPRESSION TAG SEQRES 1 A 111 GLY PRO SER MET GLY VAL GLN VAL GLU THR ILE SER PRO SEQRES 2 A 111 GLY ASP GLY ARG THR PHE PRO MLY ARG GLY GLN THR CYS SEQRES 3 A 111 VAL VAL HIS TYR THR GLY MET LEU GLU ASP GLY MLY MLY SEQRES 4 A 111 PHE ASP SER SER ARG ASP ARG ASN MLY PRO PHE MLY PHE SEQRES 5 A 111 MET LEU GLY MLY GLN GLU VAL ILE ARG GLY TRP GLU GLU SEQRES 6 A 111 GLY VAL ALA GLN MET SER VAL GLY GLN ARG ALA MLY LEU SEQRES 7 A 111 THR ILE SER PRO ASP TYR ALA TYR GLY ALA THR GLY HIS SEQRES 8 A 111 PRO GLY ILE ILE PRO PRO HIS ALA THR LEU VAL PHE ASP SEQRES 9 A 111 VAL GLU LEU LEU MLY LEU GLU MODRES 2ND5 MLY A 17 LYS N-DIMETHYL-LYSINE MODRES 2ND5 MLY A 34 LYS N-DIMETHYL-LYSINE MODRES 2ND5 MLY A 35 LYS N-DIMETHYL-LYSINE MODRES 2ND5 MLY A 44 LYS N-DIMETHYL-LYSINE MODRES 2ND5 MLY A 47 LYS N-DIMETHYL-LYSINE MODRES 2ND5 MLY A 52 LYS N-DIMETHYL-LYSINE MODRES 2ND5 MLY A 73 LYS N-DIMETHYL-LYSINE MODRES 2ND5 MLY A 105 LYS N-DIMETHYL-LYSINE HET MLY A 17 27 HET MLY A 34 27 HET MLY A 35 27 HET MLY A 44 27 HET MLY A 47 27 HET MLY A 52 27 HET MLY A 73 27 HET MLY A 105 27 HETNAM MLY N-DIMETHYL-LYSINE FORMUL 1 MLY 8(C8 H18 N2 O2) HELIX 1 1 ARG A 40 ASN A 43 5 4 HELIX 2 2 ILE A 56 VAL A 63 1 8 HELIX 3 3 ALA A 64 MET A 66 5 3 HELIX 4 4 SER A 77 TYR A 82 1 6 SHEET 1 A 5 VAL A 2 SER A 8 0 SHEET 2 A 5 ARG A 71 ILE A 76 -1 O ARG A 71 N ILE A 7 SHEET 3 A 5 LEU A 97 LEU A 106 -1 O LEU A 97 N ILE A 76 SHEET 4 A 5 THR A 27 LEU A 30 -1 N MET A 29 O VAL A 98 SHEET 5 A 5 MLY A 35 SER A 38 -1 O ASP A 37 N GLY A 28 SHEET 1 B 5 VAL A 2 SER A 8 0 SHEET 2 B 5 ARG A 71 ILE A 76 -1 O ARG A 71 N ILE A 7 SHEET 3 B 5 LEU A 97 LEU A 106 -1 O LEU A 97 N ILE A 76 SHEET 4 B 5 THR A 21 HIS A 25 -1 N VAL A 23 O MLY A 105 SHEET 5 B 5 PHE A 46 MET A 49 -1 O PHE A 46 N VAL A 24 LINK C PRO A 16 N MLY A 17 1555 1555 1.34 LINK C MLY A 17 N ARG A 18 1555 1555 1.34 LINK C GLY A 33 N MLY A 34 1555 1555 1.34 LINK C MLY A 34 N MLY A 35 1555 1555 1.34 LINK C MLY A 35 N PHE A 36 1555 1555 1.33 LINK C ASN A 43 N MLY A 44 1555 1555 1.35 LINK C MLY A 44 N PRO A 45 1555 1555 1.37 LINK C PHE A 46 N MLY A 47 1555 1555 1.34 LINK C MLY A 47 N PHE A 48 1555 1555 1.34 LINK C GLY A 51 N MLY A 52 1555 1555 1.35 LINK C MLY A 52 N GLN A 53 1555 1555 1.35 LINK C ALA A 72 N MLY A 73 1555 1555 1.34 LINK C MLY A 73 N LEU A 74 1555 1555 1.34 LINK C LEU A 104 N MLY A 105 1555 1555 1.35 LINK C MLY A 105 N LEU A 106 1555 1555 1.34 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1 ENDMDL MODEL 2 ENDMDL MODEL 3 ENDMDL MODEL 4 ENDMDL MODEL 5 ENDMDL MODEL 6 ENDMDL MODEL 7 ENDMDL MODEL 8 ENDMDL MODEL 9 ENDMDL MODEL 10 ENDMDL MODEL 11 ENDMDL MODEL 12 ENDMDL MODEL 13 ENDMDL MODEL 14 ENDMDL MODEL 15 ENDMDL MODEL 16 ENDMDL MODEL 17 ENDMDL MODEL 18 ENDMDL MODEL 19 ENDMDL MODEL 20 ENDMDL CONECT 265 277 CONECT 277 265 278 288 CONECT 278 277 279 286 289 CONECT 279 278 280 290 291 CONECT 280 279 281 292 293 CONECT 281 280 282 294 295 CONECT 282 281 283 296 297 CONECT 283 282 284 285 CONECT 284 283 298 299 300 CONECT 285 283 301 302 303 CONECT 286 278 287 304 CONECT 287 286 CONECT 288 277 CONECT 289 278 CONECT 290 279 CONECT 291 279 CONECT 292 280 CONECT 293 280 CONECT 294 281 CONECT 295 281 CONECT 296 282 CONECT 297 282 CONECT 298 284 CONECT 299 284 CONECT 300 284 CONECT 301 285 CONECT 302 285 CONECT 303 285 CONECT 304 286 CONECT 533 538 CONECT 538 533 539 549 CONECT 539 538 540 547 550 CONECT 540 539 541 551 552 CONECT 541 540 542 553 554 CONECT 542 541 543 555 556 CONECT 543 542 544 557 558 CONECT 544 543 545 546 CONECT 545 544 559 560 561 CONECT 546 544 562 563 564 CONECT 547 539 548 565 CONECT 548 547 CONECT 549 538 CONECT 550 539 CONECT 551 540 CONECT 552 540 CONECT 553 541 CONECT 554 541 CONECT 555 542 CONECT 556 542 CONECT 557 543 CONECT 558 543 CONECT 559 545 CONECT 560 545 CONECT 561 545 CONECT 562 546 CONECT 563 546 CONECT 564 546 CONECT 565 547 566 576 CONECT 566 565 567 574 577 CONECT 567 566 568 578 579 CONECT 568 567 569 580 581 CONECT 569 568 570 582 583 CONECT 570 569 571 584 585 CONECT 571 570 572 573 CONECT 572 571 586 587 588 CONECT 573 571 589 590 591 CONECT 574 566 575 592 CONECT 575 574 CONECT 576 565 CONECT 577 566 CONECT 578 567 CONECT 579 567 CONECT 580 568 CONECT 581 568 CONECT 582 569 CONECT 583 569 CONECT 584 570 CONECT 585 570 CONECT 586 572 CONECT 587 572 CONECT 588 572 CONECT 589 573 CONECT 590 573 CONECT 591 573 CONECT 592 574 CONECT 708 720 CONECT 720 708 721 731 CONECT 721 720 722 729 732 CONECT 722 721 723 733 734 CONECT 723 722 724 735 736 CONECT 724 723 725 737 738 CONECT 725 724 726 739 740 CONECT 726 725 727 728 CONECT 727 726 741 742 743 CONECT 728 726 744 745 746 CONECT 729 721 730 747 CONECT 730 729 CONECT 731 720 CONECT 732 721 CONECT 733 722 CONECT 734 722 CONECT 735 723 CONECT 736 723 CONECT 737 724 CONECT 738 724 CONECT 739 725 CONECT 740 725 CONECT 741 727 CONECT 742 727 CONECT 743 727 CONECT 744 728 CONECT 745 728 CONECT 746 728 CONECT 747 729 CONECT 763 781 CONECT 781 763 782 792 CONECT 782 781 783 790 793 CONECT 783 782 784 794 795 CONECT 784 783 785 796 797 CONECT 785 784 786 798 799 CONECT 786 785 787 800 801 CONECT 787 786 788 789 CONECT 788 787 802 803 804 CONECT 789 787 805 806 807 CONECT 790 782 791 808 CONECT 791 790 CONECT 792 781 CONECT 793 782 CONECT 794 783 CONECT 795 783 CONECT 796 784 CONECT 797 784 CONECT 798 785 CONECT 799 785 CONECT 800 786 CONECT 801 786 CONECT 802 788 CONECT 803 788 CONECT 804 788 CONECT 805 789 CONECT 806 789 CONECT 807 789 CONECT 808 790 CONECT 866 871 CONECT 871 866 872 882 CONECT 872 871 873 880 883 CONECT 873 872 874 884 885 CONECT 874 873 875 886 887 CONECT 875 874 876 888 889 CONECT 876 875 877 890 891 CONECT 877 876 878 879 CONECT 878 877 892 893 894 CONECT 879 877 895 896 897 CONECT 880 872 881 898 CONECT 881 880 CONECT 882 871 CONECT 883 872 CONECT 884 873 CONECT 885 873 CONECT 886 874 CONECT 887 874 CONECT 888 875 CONECT 889 875 CONECT 890 876 CONECT 891 876 CONECT 892 878 CONECT 893 878 CONECT 894 878 CONECT 895 879 CONECT 896 879 CONECT 897 879 CONECT 898 880 CONECT 1194 1202 CONECT 1202 1194 1203 1213 CONECT 1203 1202 1204 1211 1214 CONECT 1204 1203 1205 1215 1216 CONECT 1205 1204 1206 1217 1218 CONECT 1206 1205 1207 1219 1220 CONECT 1207 1206 1208 1221 1222 CONECT 1208 1207 1209 1210 CONECT 1209 1208 1223 1224 1225 CONECT 1210 1208 1226 1227 1228 CONECT 1211 1203 1212 1229 CONECT 1212 1211 CONECT 1213 1202 CONECT 1214 1203 CONECT 1215 1204 CONECT 1216 1204 CONECT 1217 1205 CONECT 1218 1205 CONECT 1219 1206 CONECT 1220 1206 CONECT 1221 1207 CONECT 1222 1207 CONECT 1223 1209 CONECT 1224 1209 CONECT 1225 1209 CONECT 1226 1210 CONECT 1227 1210 CONECT 1228 1210 CONECT 1229 1211 CONECT 1672 1689 CONECT 1689 1672 1690 1700 CONECT 1690 1689 1691 1698 1701 CONECT 1691 1690 1692 1702 1703 CONECT 1692 1691 1693 1704 1705 CONECT 1693 1692 1694 1706 1707 CONECT 1694 1693 1695 1708 1709 CONECT 1695 1694 1696 1697 CONECT 1696 1695 1710 1711 1712 CONECT 1697 1695 1713 1714 1715 CONECT 1698 1690 1699 1716 CONECT 1699 1698 CONECT 1700 1689 CONECT 1701 1690 CONECT 1702 1691 CONECT 1703 1691 CONECT 1704 1692 CONECT 1705 1692 CONECT 1706 1693 CONECT 1707 1693 CONECT 1708 1694 CONECT 1709 1694 CONECT 1710 1696 CONECT 1711 1696 CONECT 1712 1696 CONECT 1713 1697 CONECT 1714 1697 CONECT 1715 1697 CONECT 1716 1698 MASTER 149 0 8 4 10 0 0 6 872 1 230 9 END