HEADER CELL CYCLE 11-MAY-16 2ND9 TITLE SOLUTION STRUCTURE OF MAPZ EXTRACELLULAR DOMAIN FIRST SUBDOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MID-CELL-ANCHORED PROTEIN Z; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FIRST SUBDOMAIN (Q178 - G313) OF MAPZ EXTRACELLULAR DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS PNEUMONIAE R6; SOURCE 3 ORGANISM_COMMON: STREPTOCOCCUS PNEUMONIAE; SOURCE 4 ORGANISM_TAXID: 171101; SOURCE 5 STRAIN: R6; SOURCE 6 GENE: MAPZ, SPR0334; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_COMMON: ESCHERICHIA COLI; SOURCE 9 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_VECTOR: PETPHOS-MAPZEXTRA1 KEYWDS MAPZ, FTSZ, PEPTIDOGLYCAN, DIVISION, CELL CYCLE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR N.L.JEAN,S.MANUSE,M.GUINOT,C.M.BOUGAULT,C.GRANGEASSE,J.-P.SIMORRE REVDAT 3 01-MAY-24 2ND9 1 REMARK SEQADV REVDAT 2 05-APR-17 2ND9 1 JRNL REVDAT 1 29-JUN-16 2ND9 0 JRNL AUTH S.MANUSE,N.L.JEAN,M.GUINOT,J.P.LAVERGNE,C.LAGURI, JRNL AUTH 2 C.M.BOUGAULT,M.S.VANNIEUWENHZE,C.GRANGEASSE,J.P.SIMORRE JRNL TITL STRUCTURE-FUNCTION ANALYSIS OF THE EXTRACELLULAR DOMAIN OF JRNL TITL 2 THE PNEUMOCOCCAL CELL DIVISION SITE POSITIONING PROTEIN JRNL TITL 3 MAPZ. JRNL REF NAT COMMUN V. 7 12071 2016 JRNL REFN ESSN 2041-1723 JRNL PMID 27346279 JRNL DOI 10.1038/NCOMMS12071 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3.1, CNS 1.1, CNS REMARK 3 AUTHORS : W. RIEPING, M. HABECK, B. BARDIAUX, A. BERNARD, REMARK 3 T.E. MALLIAVIN AND M. NILGES (ARIA), A. BRUNGER, P. ADAMS, G. REMARK 3 CLORE, P. GROS, M. NILGES AND R. READ (CNS), BRUNGER,ADAMS,CLORE, REMARK 3 DELANO,GROS,GROSSE-KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ, REMARK 3 RICE,SIMONSON,WARREN (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2ND9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000104719. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.5 REMARK 210 IONIC STRENGTH : 0.1 REMARK 210 PRESSURE : 1.0 ATM REMARK 210 SAMPLE CONTENTS : 2.0 MM [U-100% 13C; U-100% 15N] REMARK 210 MAPZ_EXTRA1, 50 MM TRIS, 100 MM REMARK 210 NACL, 95% H2O/5% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC/HMQC; 3D REMARK 210 HN(CA)CO; 3D HNCO; 3D HNCACB; 3D REMARK 210 HN(COCA)CB; 3D C(CO)NH; 3D 1H- REMARK 210 15N NOESY; 3D H(CCO)NH; 2D 1H- REMARK 210 13C HSQC/HMQC; 3D 1H-13C NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 950 MHZ; 850 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : CCPNMR ANALYSIS 2.4, TALOS+ 1, REMARK 210 UNIO10' 2.0.2, NMRPIPE ANY REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 750 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 91 H LYS A 113 1.55 REMARK 500 O LEU A 124 H LEU A 128 1.56 REMARK 500 O ALA A 71 H TYR A 75 1.58 REMARK 500 O ASP A 76 HG1 THR A 80 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 5 PHE A 49 CE1 PHE A 49 CZ -0.144 REMARK 500 5 PHE A 49 CZ PHE A 49 CE2 0.162 REMARK 500 7 PHE A 49 CE1 PHE A 49 CZ -0.137 REMARK 500 7 PHE A 49 CZ PHE A 49 CE2 0.158 REMARK 500 9 PHE A 49 CE1 PHE A 49 CZ -0.151 REMARK 500 9 PHE A 49 CZ PHE A 49 CE2 0.169 REMARK 500 10 PHE A 49 CE1 PHE A 49 CZ -0.157 REMARK 500 10 PHE A 49 CZ PHE A 49 CE2 0.174 REMARK 500 12 PHE A 49 CE1 PHE A 49 CZ -0.145 REMARK 500 12 PHE A 49 CZ PHE A 49 CE2 0.167 REMARK 500 16 PHE A 49 CE1 PHE A 49 CZ -0.135 REMARK 500 16 PHE A 49 CZ PHE A 49 CE2 0.155 REMARK 500 17 PHE A 49 CE1 PHE A 49 CZ -0.140 REMARK 500 17 PHE A 49 CZ PHE A 49 CE2 0.159 REMARK 500 20 PHE A 49 CE1 PHE A 49 CZ -0.147 REMARK 500 20 PHE A 49 CZ PHE A 49 CE2 0.165 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 GLN A 4 81.33 60.82 REMARK 500 1 THR A 9 52.79 -116.51 REMARK 500 1 LYS A 10 50.11 -140.01 REMARK 500 1 GLU A 11 173.32 68.79 REMARK 500 1 THR A 14 163.23 72.16 REMARK 500 1 GLN A 16 54.17 -140.60 REMARK 500 1 SER A 17 -172.51 64.75 REMARK 500 1 ASP A 99 40.94 74.60 REMARK 500 1 LYS A 109 167.67 -46.64 REMARK 500 1 ASP A 116 71.86 -69.16 REMARK 500 2 SER A 8 -52.36 -165.01 REMARK 500 2 THR A 9 145.59 -170.74 REMARK 500 2 LYS A 10 10.79 -146.03 REMARK 500 2 ILE A 12 86.33 -68.49 REMARK 500 2 GLN A 16 -67.30 70.68 REMARK 500 2 THR A 18 -160.98 -77.02 REMARK 500 2 ASP A 99 41.40 76.98 REMARK 500 2 LYS A 109 164.36 -46.03 REMARK 500 2 ASP A 116 70.84 -69.98 REMARK 500 3 MET A 3 107.21 66.37 REMARK 500 3 GLN A 4 -85.54 -98.23 REMARK 500 3 ALA A 6 90.75 57.95 REMARK 500 3 SER A 8 -159.51 60.98 REMARK 500 3 LYS A 10 -59.00 -164.68 REMARK 500 3 GLU A 13 -66.01 -131.42 REMARK 500 3 SER A 17 -168.61 58.96 REMARK 500 3 ASP A 99 37.86 74.01 REMARK 500 3 LYS A 109 163.18 -44.13 REMARK 500 4 HIS A 2 -60.83 -103.85 REMARK 500 4 MET A 3 -91.28 -84.44 REMARK 500 4 GLN A 4 88.07 56.27 REMARK 500 4 SER A 8 -71.37 68.82 REMARK 500 4 GLU A 11 137.35 65.75 REMARK 500 4 GLN A 16 -72.94 -91.72 REMARK 500 4 SER A 17 72.90 55.77 REMARK 500 4 THR A 18 146.71 61.13 REMARK 500 4 VAL A 25 -61.64 -96.31 REMARK 500 4 ASP A 99 38.92 76.77 REMARK 500 4 LYS A 109 165.17 -47.19 REMARK 500 5 GLN A 4 87.06 60.10 REMARK 500 5 ALA A 6 -156.66 -129.76 REMARK 500 5 GLU A 13 -168.37 -125.69 REMARK 500 5 THR A 14 -79.03 70.76 REMARK 500 5 SER A 15 -149.37 54.03 REMARK 500 5 GLN A 16 78.74 63.57 REMARK 500 5 SER A 17 -169.35 62.03 REMARK 500 5 ASP A 99 41.46 82.06 REMARK 500 5 LYS A 109 165.73 -45.67 REMARK 500 6 GLN A 4 -76.10 67.54 REMARK 500 6 VAL A 5 59.89 -90.03 REMARK 500 REMARK 500 THIS ENTRY HAS 164 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ALA A 96 ILE A 97 1 149.26 REMARK 500 ALA A 96 ILE A 97 2 149.39 REMARK 500 ALA A 96 ILE A 97 3 149.45 REMARK 500 ALA A 96 ILE A 97 4 149.37 REMARK 500 ALA A 96 ILE A 97 5 149.56 REMARK 500 ALA A 96 ILE A 97 6 148.81 REMARK 500 ALA A 96 ILE A 97 7 149.56 REMARK 500 ALA A 96 ILE A 97 8 149.95 REMARK 500 ALA A 96 ILE A 97 9 149.76 REMARK 500 ALA A 96 ILE A 97 10 149.66 REMARK 500 ALA A 96 ILE A 97 11 149.17 REMARK 500 ALA A 96 ILE A 97 12 149.17 REMARK 500 ALA A 96 ILE A 97 13 149.35 REMARK 500 ALA A 96 ILE A 97 15 149.91 REMARK 500 ALA A 96 ILE A 97 16 149.41 REMARK 500 ALA A 96 ILE A 97 18 149.64 REMARK 500 ALA A 96 ILE A 97 19 149.47 REMARK 500 ALA A 96 ILE A 97 20 149.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 2 TYR A 75 0.09 SIDE CHAIN REMARK 500 5 TYR A 32 0.06 SIDE CHAIN REMARK 500 5 TYR A 75 0.08 SIDE CHAIN REMARK 500 7 TYR A 75 0.09 SIDE CHAIN REMARK 500 8 TYR A 32 0.05 SIDE CHAIN REMARK 500 8 TYR A 75 0.08 SIDE CHAIN REMARK 500 9 TYR A 32 0.06 SIDE CHAIN REMARK 500 11 PHE A 28 0.07 SIDE CHAIN REMARK 500 11 TYR A 75 0.09 SIDE CHAIN REMARK 500 13 TYR A 32 0.05 SIDE CHAIN REMARK 500 15 PHE A 28 0.07 SIDE CHAIN REMARK 500 15 TYR A 75 0.10 SIDE CHAIN REMARK 500 17 TYR A 75 0.08 SIDE CHAIN REMARK 500 18 TYR A 75 0.09 SIDE CHAIN REMARK 500 19 TYR A 32 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26052 RELATED DB: BMRB REMARK 900 RELATED ID: 2NDA RELATED DB: PDB DBREF 2ND9 A 4 135 UNP Q8DR55 MAPZ_STRR6 182 313 SEQADV 2ND9 GLY A 1 UNP Q8DR55 EXPRESSION TAG SEQADV 2ND9 HIS A 2 UNP Q8DR55 EXPRESSION TAG SEQADV 2ND9 MET A 3 UNP Q8DR55 EXPRESSION TAG SEQRES 1 A 135 GLY HIS MET GLN VAL ALA ARG SER THR LYS GLU ILE GLU SEQRES 2 A 135 THR SER GLN SER THR THR ALA ASN GLN SER ASP VAL ASP SEQRES 3 A 135 ASP PHE ASN THR LEU TYR ASP ALA PHE TYR THR ASN SER SEQRES 4 A 135 ASN LYS THR ALA LEU LYS ASN SER GLN PHE ASP LYS LEU SEQRES 5 A 135 SER GLN LEU LYS THR LEU LEU ASP LYS LEU GLU GLY SER SEQRES 6 A 135 ARG GLU HIS THR LEU ALA LYS SER LYS TYR ASP SER LEU SEQRES 7 A 135 ALA THR GLN ILE LYS ALA ILE GLN ASP VAL ASN ALA GLN SEQRES 8 A 135 PHE GLU LYS PRO ALA ILE VAL ASP GLY VAL LEU ASP THR SEQRES 9 A 135 ASN ALA LYS ALA LYS SER ASP ALA LYS PHE THR ASP ILE SEQRES 10 A 135 LYS THR GLY ASN THR GLU LEU ASP LYS VAL LEU ASP LYS SEQRES 11 A 135 ALA ILE SER LEU GLY HELIX 1 1 ASN A 21 TYR A 36 1 16 HELIX 2 2 ASN A 46 ASP A 50 5 5 HELIX 3 3 LYS A 51 GLU A 63 1 13 HELIX 4 4 ARG A 66 ALA A 90 1 25 HELIX 5 5 ASN A 121 SER A 133 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1