HEADER TOXIN 12-MAY-16 2NDB TITLE NMR STRUCTURE OF OMEGA-AGATOXIN IVA IN DPC MICELLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: OMEGA-AGATOXIN-AA4A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: OMEGA-AGTX-AA4A, OMEGA-AGATOXIN IVA, OMEGA-AGA-IVA, OMEGA- COMPND 5 AGATOXIN-4A; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGELENOPSIS APERTA; SOURCE 3 ORGANISM_COMMON: NORTH AMERICAN FUNNEL-WEB SPIDER; SOURCE 4 ORGANISM_TAXID: 6908; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR: PET31B KEYWDS NEUROTOXIN, TOXIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.H.RYU,J.I.KIM REVDAT 2 14-JUN-23 2NDB 1 REMARK SEQADV REVDAT 1 13-SEP-17 2NDB 0 JRNL AUTH J.H.RYU,H.J.JUNG,S.KONISHI,H.H.KIM,Z.Y.PARK,J.I.KIM JRNL TITL STRUCTURE-ACTIVITY RELATIONSHIPS OF OMEGA-AGATOXIN IVA IN JRNL TITL 2 LIPID MEMBRANES JRNL REF BIOCHEM. BIOPHYS. RES. V. 482 170 2017 JRNL REF 2 COMMUN. JRNL REFN ESSN 1090-2104 JRNL PMID 27838299 JRNL DOI 10.1016/J.BBRC.2016.11.025 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CYANA, X-PLOR NIH REMARK 3 AUTHORS : GUNTERT, MUMENTHALER AND WUTHRICH (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NDB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000104721. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 310 REMARK 210 PH : 4.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 50 MM [U-100% 2H] DPC-1, D38-DPC REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-1H TOCSY; 2D DQF-COSY; 2D REMARK 210 1H-1H NOESY; 2D 1H-15N HSQC; 3D REMARK 210 1H-15N NOESY; 3D 1H-15N TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 2 5.40 55.70 REMARK 500 1 CYS A 5 -118.59 -135.05 REMARK 500 1 ASP A 9 -66.68 68.07 REMARK 500 1 ARG A 12 111.06 -39.61 REMARK 500 1 THR A 18 102.74 -39.07 REMARK 500 1 PRO A 19 -170.31 -50.89 REMARK 500 1 CYS A 20 80.93 -153.44 REMARK 500 1 SER A 29 -177.03 -64.97 REMARK 500 1 THR A 33 -29.53 -147.39 REMARK 500 1 ASN A 34 53.73 -90.47 REMARK 500 1 LEU A 46 -62.26 -129.39 REMARK 500 2 LYS A 2 149.89 69.48 REMARK 500 2 LYS A 3 62.95 66.09 REMARK 500 2 CYS A 5 -78.91 -55.89 REMARK 500 2 ALA A 7 -55.57 79.37 REMARK 500 2 LYS A 8 -142.44 -80.60 REMARK 500 2 ASP A 9 -112.65 -131.90 REMARK 500 2 PRO A 19 -159.61 -74.07 REMARK 500 2 CYS A 20 95.47 -171.97 REMARK 500 2 CYS A 21 -85.07 -42.52 REMARK 500 2 THR A 33 -50.70 -122.97 REMARK 500 2 LEU A 48 -40.78 -150.04 REMARK 500 3 LYS A 2 84.31 -153.74 REMARK 500 3 LYS A 3 20.61 -177.56 REMARK 500 3 CYS A 5 -96.64 -45.54 REMARK 500 3 LYS A 8 -119.73 -111.84 REMARK 500 3 ASP A 9 -42.62 -173.72 REMARK 500 3 ARG A 12 130.31 -37.42 REMARK 500 3 PRO A 19 -160.43 -71.10 REMARK 500 3 CYS A 20 90.45 -160.98 REMARK 500 3 CYS A 21 -83.01 -49.81 REMARK 500 3 THR A 33 -49.54 -131.15 REMARK 500 3 ASN A 34 46.27 -77.12 REMARK 500 3 PRO A 39 -162.84 -70.56 REMARK 500 3 GLU A 44 -106.73 -63.04 REMARK 500 3 LEU A 48 -41.21 -153.78 REMARK 500 4 LYS A 2 15.52 53.76 REMARK 500 4 CYS A 5 -100.54 -85.72 REMARK 500 4 ASP A 9 135.18 61.18 REMARK 500 4 TYR A 10 176.35 49.99 REMARK 500 4 LYS A 14 104.88 -160.72 REMARK 500 4 THR A 18 101.88 -38.84 REMARK 500 4 CYS A 20 91.05 66.17 REMARK 500 4 CYS A 21 -73.08 -36.25 REMARK 500 4 THR A 33 -30.43 -142.25 REMARK 500 4 ASN A 34 46.34 -84.50 REMARK 500 4 MET A 43 166.24 -43.38 REMARK 500 4 GLU A 44 -14.71 -48.33 REMARK 500 5 LYS A 2 -89.88 -141.80 REMARK 500 5 LYS A 3 -159.57 -164.03 REMARK 500 REMARK 500 THIS ENTRY HAS 261 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26054 RELATED DB: BMRB DBREF 2NDB A 2 49 UNP P30288 TOG4A_AGEAP 1 48 SEQADV 2NDB GLY A 1 UNP P30288 EXPRESSION TAG SEQRES 1 A 49 GLY LYS LYS LYS CYS ILE ALA LYS ASP TYR GLY ARG CYS SEQRES 2 A 49 LYS TRP GLY GLY THR PRO CYS CYS ARG GLY ARG GLY CYS SEQRES 3 A 49 ILE CYS SER ILE MET GLY THR ASN CYS GLU CYS LYS PRO SEQRES 4 A 49 ARG LEU ILE MET GLU GLY LEU GLY LEU ALA SHEET 1 A 3 GLY A 11 ARG A 12 0 SHEET 2 A 3 GLU A 36 LYS A 38 -1 O CYS A 37 N GLY A 11 SHEET 3 A 3 GLY A 25 ILE A 27 -1 N GLY A 25 O LYS A 38 SSBOND 1 CYS A 5 CYS A 21 1555 1555 2.02 SSBOND 2 CYS A 13 CYS A 26 1555 1555 2.02 SSBOND 3 CYS A 20 CYS A 37 1555 1555 2.02 SSBOND 4 CYS A 28 CYS A 35 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1