HEADER TRANSCRIPTION 19-MAY-16 2NDG TITLE SOLUTION NMR STRUCTURES OF AF9 YEATS DOMAIN IN COMPLEX WITH HISTONE H3 TITLE 2 CROTONYLATION AT K18 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN AF-9; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: YEATS DOMAIN RESIDUES 1-138; COMPND 5 SYNONYM: ALL1-FUSED GENE FROM CHROMOSOME 9 PROTEIN, MYELOID/LYMPHOID COMPND 6 OR MIXED-LINEAGE LEUKEMIA TRANSLOCATED TO CHROMOSOME 3 PROTEIN, YEATS COMPND 7 DOMAIN-CONTAINING PROTEIN 3; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 2; COMPND 10 MOLECULE: HISTONE H3 PEPTIDE; COMPND 11 CHAIN: B; COMPND 12 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MLLT3, AF9, YEATS3; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: RIL STRAIN CELLS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR: BL21(DE3); SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES KEYWDS HISTONE, CROTONYLATION, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.ZENG,M.ZHOU REVDAT 3 15-NOV-23 2NDG 1 REMARK SEQADV LINK ATOM REVDAT 2 21-SEP-16 2NDG 1 JRNL REVDAT 1 07-SEP-16 2NDG 0 JRNL AUTH Q.ZHANG,L.ZENG,C.ZHAO,Y.JU,T.KONUMA,M.M.ZHOU JRNL TITL STRUCTURAL INSIGHTS INTO HISTONE CROTONYL-LYSINE RECOGNITION JRNL TITL 2 BY THE AF9 YEATS DOMAIN. JRNL REF STRUCTURE V. 24 1606 2016 JRNL REFN ISSN 0969-2126 JRNL PMID 27545619 JRNL DOI 10.1016/J.STR.2016.05.023 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : ARIA 2.3, TALOS TALOSN, TALOSPLUS, CNS 1.2 REMARK 3 AUTHORS : LINGE, O'DONOGHUE AND NILGES (ARIA), CORNILESCU, REMARK 3 DELAGLIO AND BAX (TALOS), BRUNGER, ADAMS, CLORE, REMARK 3 GROS, NILGES AND READ (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NDG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-MAY-16. REMARK 100 THE DEPOSITION ID IS D_1000104726. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.4 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 10 MM SODIUM PHOSPHATE, 500 MM REMARK 210 SODIUM CHLORIDE, 2 MM EDTA, 2 MM REMARK 210 [U-100% 2H] DTT, 90% H2O/10% D2O; REMARK 210 10 MM SODIUM PHOSPHATE, 500 MM REMARK 210 SODIUM CHLORIDE, 2 MM EDTA, 2 MM REMARK 210 [U-100% 2H] DTT, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D 1H-15N HSQC; 3D HNCACB; 3D REMARK 210 CBCA(CO)NH; 3D HNCO; 3D 1H-15N REMARK 210 NOESY; 3D 1H-15N TOCSY; 3D 1H- REMARK 210 13C NOESY ALIPHATIC; 3D 1H-13C REMARK 210 NOESY AROMATIC; 3D FILTERED 1H- REMARK 210 13C NOESY ALIPHATIC; 3D FILTERED REMARK 210 1H-13C NOESY AROMATIC REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 900 MHZ; 600 MHZ; 500 REMARK 210 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 7.1, NMRVIEW 5.04 C REMARK 210 -VERSION, CNS 1.2, TOPSPIN REMARK 210 METHOD USED : DISTANCE GEOMETRY, TORSION ANGLE REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 14 H GLU A 123 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 HIS A 18 144.48 -174.69 REMARK 500 1 HIS A 44 -20.53 93.60 REMARK 500 1 GLU A 52 -60.75 -104.58 REMARK 500 1 LEU A 58 -176.69 -69.97 REMARK 500 1 ARG A 64 72.58 52.34 REMARK 500 1 PRO A 72 -167.67 -46.41 REMARK 500 1 PRO A 73 110.57 -18.61 REMARK 500 1 TYR A 81 21.82 -149.03 REMARK 500 1 PHE A 84 157.39 178.38 REMARK 500 1 GLU A 96 -148.43 -101.09 REMARK 500 1 GLU A 97 161.70 -29.91 REMARK 500 1 PRO A 98 128.29 -35.03 REMARK 500 2 HIS A 18 141.12 -175.44 REMARK 500 2 HIS A 44 -18.96 90.97 REMARK 500 2 LEU A 58 -177.43 -68.54 REMARK 500 2 PRO A 72 -172.74 -47.99 REMARK 500 2 PRO A 73 110.96 -18.47 REMARK 500 2 TYR A 81 16.41 -144.58 REMARK 500 2 GLU A 96 -149.33 -124.49 REMARK 500 2 GLU A 97 169.98 -35.24 REMARK 500 2 PRO A 98 129.83 -32.43 REMARK 500 2 ASN A 129 75.85 43.43 REMARK 500 2 GLN B 219 72.24 58.58 REMARK 500 3 HIS A 3 73.13 51.54 REMARK 500 3 MET A 4 -82.30 -116.32 REMARK 500 3 ALA A 5 -74.79 -101.60 REMARK 500 3 HIS A 18 145.14 -175.07 REMARK 500 3 HIS A 44 -16.46 83.22 REMARK 500 3 GLU A 52 -68.42 -101.95 REMARK 500 3 PRO A 72 -178.36 -35.33 REMARK 500 3 PRO A 73 110.62 -16.47 REMARK 500 3 TYR A 81 20.25 -143.82 REMARK 500 3 PHE A 84 153.60 176.75 REMARK 500 3 GLU A 96 -149.32 -101.89 REMARK 500 3 GLU A 97 161.27 -28.74 REMARK 500 3 PRO A 98 123.24 -36.67 REMARK 500 4 HIS A 18 148.39 -174.83 REMARK 500 4 HIS A 44 -20.50 94.81 REMARK 500 4 LEU A 58 -178.34 -65.18 REMARK 500 4 PRO A 72 -175.30 -35.90 REMARK 500 4 PRO A 73 110.82 -16.01 REMARK 500 4 TYR A 81 20.98 -149.13 REMARK 500 4 GLU A 96 -149.17 -108.62 REMARK 500 4 GLU A 97 168.53 -34.03 REMARK 500 4 PRO A 98 122.34 -26.73 REMARK 500 4 PRO A 116 128.69 -38.39 REMARK 500 4 KCR B 218 42.96 -102.87 REMARK 500 5 HIS A 3 7.82 -151.81 REMARK 500 5 HIS A 18 143.56 -175.06 REMARK 500 5 HIS A 44 -14.07 91.23 REMARK 500 REMARK 500 THIS ENTRY HAS 284 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 20 ARG A 121 0.11 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 26060 RELATED DB: BMRB REMARK 900 RELATED ID: 2NDF RELATED DB: PDB DBREF 2NDG A 4 141 UNP P42568 AF9_HUMAN 1 138 DBREF 2NDG B 212 224 PDB 2NDG 2NDG 212 224 SEQADV 2NDG GLY A 1 UNP P42568 EXPRESSION TAG SEQADV 2NDG SER A 2 UNP P42568 EXPRESSION TAG SEQADV 2NDG HIS A 3 UNP P42568 EXPRESSION TAG SEQRES 1 A 141 GLY SER HIS MET ALA SER SER CYS ALA VAL GLN VAL LYS SEQRES 2 A 141 LEU GLU LEU GLY HIS ARG ALA GLN VAL ARG LYS LYS PRO SEQRES 3 A 141 THR VAL GLU GLY PHE THR HIS ASP TRP MET VAL PHE VAL SEQRES 4 A 141 ARG GLY PRO GLU HIS SER ASN ILE GLN HIS PHE VAL GLU SEQRES 5 A 141 LYS VAL VAL PHE HIS LEU HIS GLU SER PHE PRO ARG PRO SEQRES 6 A 141 LYS ARG VAL CYS LYS ASP PRO PRO TYR LYS VAL GLU GLU SEQRES 7 A 141 SER GLY TYR ALA GLY PHE ILE LEU PRO ILE GLU VAL TYR SEQRES 8 A 141 PHE LYS ASN LYS GLU GLU PRO ARG LYS VAL ARG PHE ASP SEQRES 9 A 141 TYR ASP LEU PHE LEU HIS LEU GLU GLY HIS PRO PRO VAL SEQRES 10 A 141 ASN HIS LEU ARG CYS GLU LYS LEU THR PHE ASN ASN PRO SEQRES 11 A 141 THR GLU ASP PHE ARG ARG LYS LEU LEU LYS ALA SEQRES 1 B 13 GLY GLY LYS ALA PRO ARG KCR GLN LEU ALA THR LYS ALA MODRES 2NDG KCR B 218 LYS N-6-CROTONYL-L-LYSINE HET KCR B 218 30 HETNAM KCR N-6-CROTONYL-L-LYSINE FORMUL 2 KCR C10 H18 N2 O3 HELIX 1 1 ASN A 46 HIS A 49 5 4 HELIX 2 2 THR A 131 ALA A 141 1 11 SHEET 1 A 4 TYR A 74 GLY A 80 0 SHEET 2 A 4 HIS A 33 ARG A 40 -1 N HIS A 33 O GLY A 80 SHEET 3 A 4 ALA A 9 VAL A 22 -1 N GLU A 15 O ARG A 40 SHEET 4 A 4 VAL A 117 ASN A 128 -1 O GLU A 123 N LEU A 14 SHEET 1 B 4 LYS A 66 CYS A 69 0 SHEET 2 B 4 VAL A 51 HIS A 57 -1 N VAL A 54 O CYS A 69 SHEET 3 B 4 PHE A 84 PHE A 92 -1 O TYR A 91 N LYS A 53 SHEET 4 B 4 LYS A 100 LEU A 107 -1 O TYR A 105 N LEU A 86 LINK C ARG B 217 N KCR B 218 1555 1555 1.33 LINK C KCR B 218 N GLN B 219 1555 1555 1.32 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1