HEADER OXIDOREDUCTASES 22-AUG-16 2NDO TITLE STRUCTURE OF ECDSBA-SULFONAMIDE1 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOL:DISULFIDE INTERCHANGE PROTEIN DSBA; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI K-12; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: DSBA, DSF, PPFA, B3860, JW3832; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR: B0013-(5644BB) KEYWDS OXIDISED ECDSBA, SULFONAMIDE, OXIDOREDUCTASES EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR M.L.WILLIAMS,B.C.DOAK,M.VAZIRANI,O.ILYICHOVA,G.WANG,W.BERMEL, AUTHOR 2 J.S.SIMPSON,D.K.CHALMERS,G.F.KING,M.MOBLI,M.J.SCANLON REVDAT 2 14-JUN-23 2NDO 1 REMARK REVDAT 1 08-FEB-17 2NDO 0 JRNL AUTH B.MOHANTY,M.L.WILLIAMS,B.C.DOAK,M.VAZIRANI,O.ILYICHOVA, JRNL AUTH 2 G.WANG,W.BERMEL,J.S.SIMPSON,D.K.CHALMERS,G.F.KING,M.MOBLI, JRNL AUTH 3 M.J.SCANLON JRNL TITL DETERMINATION OF LIGAND BINDING MODES IN WEAK PROTEIN-LIGAND JRNL TITL 2 COMPLEXES USING SPARSE NMR DATA. JRNL REF J.BIOMOL.NMR V. 66 195 2016 JRNL REFN ISSN 0925-2738 JRNL PMID 27778134 JRNL DOI 10.1007/S10858-016-0067-4 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CARA, HADDOCK REMARK 3 AUTHORS : KELLER AND WUTHRICH (CARA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE RELEASED PDB ENTRY 1FVK WAS USED REMARK 3 FOR HADDOCK MODEL BUILDING REMARK 4 REMARK 4 2NDO COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-AUG-16. REMARK 100 THE DEPOSITION ID IS D_1000104734. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300; 300 REMARK 210 PH : 6.8; 6.8 REMARK 210 IONIC STRENGTH : 50; 50 REMARK 210 PRESSURE : AMBIENT ATM; AMBIENT ATM REMARK 210 SAMPLE CONTENTS : 0.35 MM ISOTOPOMER SAMPLE REMARK 210 OXIDISED ECDSBA, 95% H2O/5% D2O; REMARK 210 0.4 MM [U-99% 13C; U-99% 15N] REMARK 210 OXIDISED ECDSBA, 1.5 MM REMARK 210 SULFONAMIDE1, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D F1- 13 C, 15 N-FILTERED, F3 - REMARK 210 13 C ALI (METHYL) EDITED [ 1 H, REMARK 210 1 H]-NOESY; 2D F1-EDITED, F2-13C, REMARK 210 15N-FILTERED [1H,1H]-NOESY; 2D REMARK 210 1H-13C HSQC; 3D CHD2-C-TOCSY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ; 800 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : HADDOCK 2.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 24 HZ1 LYS A 58 1.57 REMARK 500 OD2 ASP A 5 HG1 THR A 11 1.57 REMARK 500 HZ1 LYS A 158 O LYS A 189 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 7 -74.85 -115.38 REMARK 500 1 ASN A 156 17.88 58.80 REMARK 500 1 LYS A 188 -72.44 -109.37 REMARK 500 2 LYS A 7 -74.73 -109.12 REMARK 500 2 VAL A 150 -61.85 -97.85 REMARK 500 3 LYS A 7 -80.04 -99.13 REMARK 500 3 LYS A 98 -70.79 -79.61 REMARK 500 4 LYS A 7 -73.31 -108.52 REMARK 500 4 ASN A 127 40.61 -106.55 REMARK 500 4 ARG A 148 40.84 -100.51 REMARK 500 4 ASN A 156 17.30 58.37 REMARK 500 4 MET A 166 -167.41 -109.19 REMARK 500 4 LYS A 188 59.06 -112.23 REMARK 500 5 LYS A 7 -72.34 -118.04 REMARK 500 5 LYS A 98 -70.34 -78.78 REMARK 500 5 ASN A 156 14.03 59.46 REMARK 500 5 LYS A 188 -60.20 -106.90 REMARK 500 6 LYS A 7 -80.89 -112.46 REMARK 500 6 GLN A 146 74.93 64.18 REMARK 500 7 LYS A 7 -75.85 -118.21 REMARK 500 7 LYS A 98 -73.52 -74.53 REMARK 500 7 LYS A 158 -43.07 -130.62 REMARK 500 8 LYS A 7 -79.40 -100.97 REMARK 500 8 VAL A 39 -64.87 -102.86 REMARK 500 8 GLN A 146 74.28 57.72 REMARK 500 8 MET A 166 -164.46 -106.29 REMARK 500 9 LYS A 7 -77.30 -105.78 REMARK 500 10 LYS A 7 -83.16 -95.68 REMARK 500 10 LYS A 98 -70.91 -69.14 REMARK 500 10 ASN A 156 16.68 58.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SFQ A 201 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 19664 RELATED DB: BMRB DBREF 2NDO A 1 189 UNP P0AEG4 DSBA_ECOLI 20 208 SEQRES 1 A 189 ALA GLN TYR GLU ASP GLY LYS GLN TYR THR THR LEU GLU SEQRES 2 A 189 LYS PRO VAL ALA GLY ALA PRO GLN VAL LEU GLU PHE PHE SEQRES 3 A 189 SER PHE PHE CYS PRO HIS CYS TYR GLN PHE GLU GLU VAL SEQRES 4 A 189 LEU HIS ILE SER ASP ASN VAL LYS LYS LYS LEU PRO GLU SEQRES 5 A 189 GLY VAL LYS MET THR LYS TYR HIS VAL ASN PHE MET GLY SEQRES 6 A 189 GLY ASP LEU GLY LYS ASP LEU THR GLN ALA TRP ALA VAL SEQRES 7 A 189 ALA MET ALA LEU GLY VAL GLU ASP LYS VAL THR VAL PRO SEQRES 8 A 189 LEU PHE GLU GLY VAL GLN LYS THR GLN THR ILE ARG SER SEQRES 9 A 189 ALA SER ASP ILE ARG ASP VAL PHE ILE ASN ALA GLY ILE SEQRES 10 A 189 LYS GLY GLU GLU TYR ASP ALA ALA TRP ASN SER PHE VAL SEQRES 11 A 189 VAL LYS SER LEU VAL ALA GLN GLN GLU LYS ALA ALA ALA SEQRES 12 A 189 ASP VAL GLN LEU ARG GLY VAL PRO ALA MET PHE VAL ASN SEQRES 13 A 189 GLY LYS TYR GLN LEU ASN PRO GLN GLY MET ASP THR SER SEQRES 14 A 189 ASN MET ASP VAL PHE VAL GLN GLN TYR ALA ASP THR VAL SEQRES 15 A 189 LYS TYR LEU SER GLU LYS LYS HET SFQ A 201 29 HETNAM SFQ 2-{[(4-IODOPHENYL)SULFONYL]AMINO}BENZOIC ACID FORMUL 2 SFQ C13 H10 I N O4 S HELIX 1 1 CYS A 30 GLU A 38 1 9 HELIX 2 2 HIS A 41 LEU A 50 1 10 HELIX 3 3 ASP A 67 GLY A 83 1 17 HELIX 4 4 VAL A 84 LYS A 98 1 15 HELIX 5 5 SER A 104 GLY A 116 1 13 HELIX 6 6 LYS A 118 ASN A 127 1 10 HELIX 7 7 SER A 128 VAL A 145 1 18 HELIX 8 8 PRO A 163 MET A 166 5 4 HELIX 9 9 ASN A 170 GLU A 187 1 18 SHEET 1 A 5 TYR A 9 THR A 11 0 SHEET 2 A 5 TYR A 159 LEU A 161 -1 O GLN A 160 N THR A 10 SHEET 3 A 5 ALA A 152 VAL A 155 -1 N VAL A 155 O TYR A 159 SHEET 4 A 5 VAL A 22 PHE A 26 -1 N LEU A 23 O PHE A 154 SHEET 5 A 5 MET A 56 HIS A 60 1 O TYR A 59 N GLU A 24 SITE 1 AC1 8 HIS A 32 GLN A 35 PHE A 36 LEU A 40 SITE 2 AC1 8 PRO A 163 THR A 168 MET A 171 PHE A 174 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1