HEADER ANTIMICROBIAL PROTEIN 20-OCT-06 2NLB TITLE HUMAN BETA-DEFENSIN-1 (MUTANT ASN4ALA) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-DEFENSIN 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: HUMAN BETA-DEFENSIN 1, RESIDUES 33-68; COMPND 5 SYNONYM: BD-1, DEFENSIN, BETA 1, HBD-1; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: DEFB1, BD1, HBD1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)PLYSE; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PAED4 KEYWDS ANTIMICROBIAL, CHEMOTACTIC, DEFENSIN, ANTIMICROBIAL PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.LUBKOWSKI,M.PAZGIER REVDAT 9 06-NOV-24 2NLB 1 REMARK REVDAT 8 30-AUG-23 2NLB 1 REMARK REVDAT 7 20-OCT-21 2NLB 1 REMARK SEQADV REVDAT 6 18-OCT-17 2NLB 1 REMARK REVDAT 5 13-JUL-11 2NLB 1 VERSN REVDAT 4 24-FEB-09 2NLB 1 VERSN REVDAT 3 30-JAN-07 2NLB 1 JRNL REVDAT 2 19-DEC-06 2NLB 1 JRNL REVDAT 1 31-OCT-06 2NLB 0 JRNL AUTH M.PAZGIER,A.PRAHL,D.M.HOOVER,J.LUBKOWSKI JRNL TITL STUDIES OF THE BIOLOGICAL PROPERTIES OF HUMAN BETA-DEFENSIN JRNL TITL 2 1. JRNL REF J.BIOL.CHEM. V. 282 1819 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17071614 JRNL DOI 10.1074/JBC.M607210200 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 12045 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.182 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 577 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.85 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.90 REMARK 3 REFLECTION IN BIN (WORKING SET) : 800 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.12 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 42 REMARK 3 BIN FREE R VALUE : 0.2630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1072 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 25 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : -0.21000 REMARK 3 B33 (A**2) : 0.51000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.84000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.153 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.432 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1136 ; 0.016 ; NULL REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1530 ; 1.523 ; NULL REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 140 ; 5.506 ; NULL REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 36 ;40.744 ; NULL REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 196 ;13.612 ; NULL REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 4 ;27.592 ; NULL REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 156 ; 0.094 ; NULL REMARK 3 GENERAL PLANES REFINED ATOMS (A): 808 ; 0.007 ; NULL REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 491 ; 0.229 ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 784 ; 0.302 ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 173 ; 0.184 ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 107 ; 0.174 ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 45 ; 0.236 ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 736 ; 1.013 ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1133 ; 1.483 ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 470 ; 2.230 ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 397 ; 3.169 ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 1 D 36 REMARK 3 ORIGIN FOR THE GROUP (A): 9.0413 12.1258 19.7823 REMARK 3 T TENSOR REMARK 3 T11: -0.0719 T22: -0.0688 REMARK 3 T33: -0.0258 T12: 0.0258 REMARK 3 T13: -0.0035 T23: 0.0050 REMARK 3 L TENSOR REMARK 3 L11: 0.4372 L22: 0.2068 REMARK 3 L33: 0.0860 L12: 0.3007 REMARK 3 L13: 0.1940 L23: 0.1334 REMARK 3 S TENSOR REMARK 3 S11: -0.0364 S12: 0.0691 S13: -0.0109 REMARK 3 S21: -0.0889 S22: 0.0186 S23: -0.0123 REMARK 3 S31: -0.0146 S32: 0.0193 S33: 0.0178 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NLB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000040003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-AUG-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54178 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : OSMIC MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12053 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 5.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 5.00 REMARK 200 R MERGE FOR SHELL (I) : 0.25500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 6.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1IJV REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, AMMONIUM SULFATE, SODIUM REMARK 280 CACODYLATE, PH 6.5, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 13.20000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5, 6, 7 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: BIOLOGICAL ASSEMBLY IS A MONOMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8370 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -101.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -46.52000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -26.40000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -10.78005 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 -13.20000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 56.51099 REMARK 350 REMARK 350 BIOMOLECULE: 6 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1330 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 -46.52000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 -26.40000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 7 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 4820 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -38.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 308 O HOH D 354 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 327 O HOH C 63 1445 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 20 -5.12 72.35 REMARK 500 TYR A 28 64.01 63.03 REMARK 500 SER B 15 -164.20 -102.68 REMARK 500 TYR B 28 63.35 63.61 REMARK 500 TYR C 28 64.75 60.53 REMARK 500 SER D 15 -166.74 -100.16 REMARK 500 TYR D 28 65.46 68.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IJV RELATED DB: PDB REMARK 900 HUMAN BETA-DEFENSIN-1 REMARK 900 RELATED ID: 2NLC RELATED DB: PDB REMARK 900 HUMAN BETA-DEFENSIN-1 (MUATNT SER8ALA) REMARK 900 RELATED ID: 2NLD RELATED DB: PDB REMARK 900 HUMAN BETA-DEFENSIN-1 (MUTANT GLN11ALA) REMARK 900 RELATED ID: 2NLE RELATED DB: PDB REMARK 900 HUMAN BETA-DEFENSIN-1 (MUTANT GLN11ALA) REMARK 900 RELATED ID: 2NLF RELATED DB: PDB REMARK 900 HUMAN BETA-DEFENSIN-1 (MUTANT LEU13GLU) REMARK 900 RELATED ID: 2NLG RELATED DB: PDB REMARK 900 HUMAN BETA-DEFENSIN-1 (MUTANT LYS22GLU) REMARK 900 RELATED ID: 2NLH RELATED DB: PDB REMARK 900 HUMAN BETA-DEFENSIN-1 (MUTANT GLN24ALA) REMARK 900 RELATED ID: 2NLP RELATED DB: PDB REMARK 900 RELATED ID: 2NLQ RELATED DB: PDB REMARK 900 RELATED ID: 2NLS RELATED DB: PDB DBREF 2NLB A 1 36 UNP P60022 BD01_HUMAN 33 68 DBREF 2NLB B 1 36 UNP P60022 BD01_HUMAN 33 68 DBREF 2NLB C 1 36 UNP P60022 BD01_HUMAN 33 68 DBREF 2NLB D 1 36 UNP P60022 BD01_HUMAN 33 68 SEQADV 2NLB ALA A 4 UNP P60022 ASN 36 ENGINEERED MUTATION SEQADV 2NLB ALA B 4 UNP P60022 ASN 36 ENGINEERED MUTATION SEQADV 2NLB ALA C 4 UNP P60022 ASN 36 ENGINEERED MUTATION SEQADV 2NLB ALA D 4 UNP P60022 ASN 36 ENGINEERED MUTATION SEQRES 1 A 36 ASP HIS TYR ALA CYS VAL SER SER GLY GLY GLN CYS LEU SEQRES 2 A 36 TYR SER ALA CYS PRO ILE PHE THR LYS ILE GLN GLY THR SEQRES 3 A 36 CYS TYR ARG GLY LYS ALA LYS CYS CYS LYS SEQRES 1 B 36 ASP HIS TYR ALA CYS VAL SER SER GLY GLY GLN CYS LEU SEQRES 2 B 36 TYR SER ALA CYS PRO ILE PHE THR LYS ILE GLN GLY THR SEQRES 3 B 36 CYS TYR ARG GLY LYS ALA LYS CYS CYS LYS SEQRES 1 C 36 ASP HIS TYR ALA CYS VAL SER SER GLY GLY GLN CYS LEU SEQRES 2 C 36 TYR SER ALA CYS PRO ILE PHE THR LYS ILE GLN GLY THR SEQRES 3 C 36 CYS TYR ARG GLY LYS ALA LYS CYS CYS LYS SEQRES 1 D 36 ASP HIS TYR ALA CYS VAL SER SER GLY GLY GLN CYS LEU SEQRES 2 D 36 TYR SER ALA CYS PRO ILE PHE THR LYS ILE GLN GLY THR SEQRES 3 D 36 CYS TYR ARG GLY LYS ALA LYS CYS CYS LYS HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 A 305 5 HET SO4 D 303 5 HET SO4 D 304 5 HETNAM SO4 SULFATE ION FORMUL 5 SO4 5(O4 S 2-) FORMUL 10 HOH *216(H2 O) HELIX 1 1 ASP A 1 SER A 8 1 8 HELIX 2 2 ASP B 1 SER B 8 1 8 HELIX 3 3 ASP C 1 SER C 8 1 8 HELIX 4 4 ASP D 1 SER D 8 1 8 SHEET 1 A 3 GLN A 11 LEU A 13 0 SHEET 2 A 3 ALA A 32 CYS A 35 -1 O CYS A 35 N GLN A 11 SHEET 3 A 3 ILE A 23 CYS A 27 -1 N CYS A 27 O ALA A 32 SHEET 1 B 3 GLN B 11 LEU B 13 0 SHEET 2 B 3 ALA B 32 CYS B 35 -1 O CYS B 35 N GLN B 11 SHEET 3 B 3 ILE B 23 CYS B 27 -1 N GLN B 24 O CYS B 34 SHEET 1 C 3 GLN C 11 LEU C 13 0 SHEET 2 C 3 ALA C 32 CYS C 35 -1 O LYS C 33 N LEU C 13 SHEET 3 C 3 ILE C 23 CYS C 27 -1 N GLN C 24 O CYS C 34 SHEET 1 D 3 GLN D 11 LEU D 13 0 SHEET 2 D 3 ALA D 32 CYS D 35 -1 O CYS D 35 N GLN D 11 SHEET 3 D 3 ILE D 23 CYS D 27 -1 N CYS D 27 O ALA D 32 SSBOND 1 CYS A 5 CYS A 34 1555 1555 2.01 SSBOND 2 CYS A 12 CYS A 27 1555 1555 2.04 SSBOND 3 CYS A 17 CYS A 35 1555 1555 2.03 SSBOND 4 CYS B 5 CYS B 34 1555 1555 2.05 SSBOND 5 CYS B 12 CYS B 27 1555 1555 2.04 SSBOND 6 CYS B 17 CYS B 35 1555 1555 2.01 SSBOND 7 CYS C 5 CYS C 34 1555 1555 2.06 SSBOND 8 CYS C 12 CYS C 27 1555 1555 2.02 SSBOND 9 CYS C 17 CYS C 35 1555 1555 2.01 SSBOND 10 CYS D 5 CYS D 34 1555 1555 2.06 SSBOND 11 CYS D 12 CYS D 27 1555 1555 2.07 SSBOND 12 CYS D 17 CYS D 35 1555 1555 2.04 SITE 1 AC1 10 ASP A 1 HIS A 2 CYS A 27 TYR A 28 SITE 2 AC1 10 ARG A 29 HOH A 310 HOH A 313 HOH A 322 SITE 3 AC1 10 TYR C 3 HOH C 37 SITE 1 AC2 12 TYR A 3 HOH A 310 HOH A 322 HOH A 327 SITE 2 AC2 12 HOH A 330 HOH A 357 ASP C 1 HIS C 2 SITE 3 AC2 12 CYS C 27 TYR C 28 ARG C 29 HOH C 39 SITE 1 AC3 5 HOH D 310 HOH D 318 HOH D 322 HOH D 324 SITE 2 AC3 5 HOH D 339 SITE 1 AC4 3 HOH D 306 HOH D 310 HOH D 318 SITE 1 AC5 4 ARG A 29 TYR C 3 ALA C 4 HOH C 57 CRYST1 46.520 26.400 57.530 90.00 100.80 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021496 0.000000 0.004101 0.00000 SCALE2 0.000000 0.037879 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017696 0.00000