HEADER TRANSFERASE 14-JUL-98 2NMT TITLE MYRISTOYL-COA:PROTEIN N-MYRISTOYLTRANSFERASE BOUND TO MYRISTOYL-COA TITLE 2 AND PEPTIDE ANALOGS COMPND MOL_ID: 1; COMPND 2 MOLECULE: MYRISTOYL-COA\:PROTEIN N-MYRISTOYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GLYCYLPEPTIDE N-TETRADECANOYLTRANSFERASE, PEPTIDE N- COMPND 5 MYRISTOYLTRANSFERASE, NMT; COMPND 6 EC: 2.3.1.97; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 GENE: NMT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM101; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PBB131 KEYWDS TRANSFERASE ACYLTRANSFERASE, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR K.FUETTERER,R.S.BHATNAGAR,G.WAKSMAN REVDAT 3 13-JUL-11 2NMT 1 VERSN REVDAT 2 24-FEB-09 2NMT 1 VERSN REVDAT 1 06-JAN-99 2NMT 0 JRNL AUTH R.S.BHATNAGAR,K.FUTTERER,T.A.FARAZI,S.KOROLEV,C.L.MURRAY, JRNL AUTH 2 E.JACKSON-MACHELSKI,G.W.GOKEL,J.I.GORDON,G.WAKSMAN JRNL TITL STRUCTURE OF N-MYRISTOYLTRANSFERASE WITH BOUND MYRISTOYLCOA JRNL TITL 2 AND PEPTIDE SUBSTRATE ANALOGS. JRNL REF NAT.STRUCT.BIOL. V. 5 1091 1998 JRNL REFN ISSN 1072-8368 JRNL PMID 9846880 JRNL DOI 10.1038/4202 REMARK 2 REMARK 2 RESOLUTION. 2.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.3 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 14271 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.297 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.300 REMARK 3 FREE R VALUE TEST SET COUNT : 1040 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.00 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 86.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1226 REMARK 3 BIN R VALUE (WORKING SET) : 0.2700 REMARK 3 BIN FREE R VALUE : 0.3780 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 7.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 93 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.039 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3388 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 179 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 63.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.35 REMARK 3 ESD FROM SIGMAA (A) : 0.38 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.51 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.73 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.016 REMARK 3 BOND ANGLES (DEGREES) : 2.20 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 24.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.07 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.560 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.580 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.110 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.080 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.50 REMARK 3 BSOL : 150.00 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : SC58272_MIM_CORR1.PAR REMARK 3 PARAMETER FILE 3 : NHMC_CORR1.PAR REMARK 3 PARAMETER FILE 4 : GOL.PAR REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NHMC.TOP REMARK 3 TOPOLOGY FILE 3 : SC58272_MIM.TOP REMARK 3 TOPOLOGY FILE 4 : GOL.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT MODEL USED REMARK 4 REMARK 4 2NMT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9668, 0.9789, 0.9792 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 14314 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.900 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.04400 REMARK 200 R SYM (I) : 0.04400 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: CNS 0.3 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.49 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 6.2 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.56667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 71.13333 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 71.13333 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 35.56667 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 36 CG CD CE NZ REMARK 470 LYS A 39 CG CD CE NZ REMARK 470 LYS A 61 CG CD CE NZ REMARK 470 LYS A 130 CG CD CE NZ REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 LYS A 140 CG CD CE NZ REMARK 470 LYS A 255 CG CD CE NZ REMARK 470 LYS A 266 CG CD CE NZ REMARK 470 ARG A 278 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 302 CG CD OE1 OE2 REMARK 470 LEU A 304 CG CD1 CD2 REMARK 470 LYS A 322 CG CD CE NZ REMARK 470 LYS A 362 CG CD CE NZ REMARK 470 ASP A 363 CG OD1 OD2 REMARK 470 LYS A 368 CG CD CE NZ REMARK 470 LYS A 371 CG CD CE NZ REMARK 470 LYS A 412 CG CD CE NZ REMARK 470 ILE A 444 CG1 CG2 CD1 REMARK 470 LYS A 445 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O THR A 433 OG SER A 448 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O1 GOL A 811 O1 GOL A 811 5556 1.32 REMARK 500 O3 GOL A 811 O3 GOL A 811 5556 1.99 REMARK 500 OD2 ASP A 245 O2 GOL A 809 6666 2.04 REMARK 500 OD2 ASP A 70 O1 GOL A 811 5556 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 399 N - CA - C ANGL. DEV. = 18.5 DEGREES REMARK 500 GLY A 435 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 MET A 35 -30.43 -38.35 REMARK 500 PRO A 45 52.25 -69.05 REMARK 500 LYS A 47 -178.32 -49.70 REMARK 500 ASP A 50 -79.48 -73.59 REMARK 500 GLU A 51 107.44 -13.08 REMARK 500 PHE A 96 -36.75 -39.91 REMARK 500 ALA A 109 73.77 55.37 REMARK 500 HIS A 134 74.09 -113.26 REMARK 500 PHE A 170 26.52 81.84 REMARK 500 PRO A 211 -80.71 -10.87 REMARK 500 ALA A 212 66.25 -111.05 REMARK 500 ASN A 225 74.23 -114.11 REMARK 500 LYS A 257 61.61 -116.42 REMARK 500 LEU A 264 148.41 -27.75 REMARK 500 ILE A 269 -67.33 -20.76 REMARK 500 ILE A 288 76.93 -107.27 REMARK 500 THR A 290 -166.87 -78.36 REMARK 500 PHE A 294 -61.07 -151.07 REMARK 500 LEU A 304 135.70 -39.44 REMARK 500 GLN A 309 143.05 -39.24 REMARK 500 LYS A 322 83.32 -40.93 REMARK 500 LEU A 332 85.21 -151.15 REMARK 500 TYR A 351 -118.34 -91.88 REMARK 500 ALA A 357 -93.23 -35.28 REMARK 500 LYS A 362 -162.34 -124.86 REMARK 500 ASP A 366 133.61 -27.52 REMARK 500 PRO A 367 -71.46 -24.76 REMARK 500 LYS A 368 -17.88 -49.02 REMARK 500 LYS A 374 -72.44 -26.13 REMARK 500 CYS A 378 -14.05 -47.97 REMARK 500 LEU A 380 -71.17 -71.47 REMARK 500 ASN A 392 50.83 80.14 REMARK 500 THR A 400 17.23 58.33 REMARK 500 GLN A 402 -138.16 56.91 REMARK 500 LEU A 408 -90.08 -44.95 REMARK 500 LYS A 412 30.88 76.84 REMARK 500 TYR A 427 130.19 -170.45 REMARK 500 ASN A 440 28.38 46.71 REMARK 500 ARG A 447 -122.38 -64.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 279 0.10 SIDE CHAIN REMARK 500 TYR A 342 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 FOR AMINO ACIDS AND C1'--O4'--N1(N9)--C2' FOR REMARK 500 NUCLEIC ACIDS OR EQUIVALENT ANGLE REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 LEU A 399 22.6 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NHM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MIM A 700 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 805 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 806 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 807 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 808 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 809 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 810 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 811 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 812 DBREF 2NMT A 34 455 UNP P14743 NMT_YEAST 34 455 SEQRES 1 A 422 ALA MET LYS ASP HIS LYS PHE TRP ARG THR GLN PRO VAL SEQRES 2 A 422 LYS ASP PHE ASP GLU LYS VAL VAL GLU GLU GLY PRO ILE SEQRES 3 A 422 ASP LYS PRO LYS THR PRO GLU ASP ILE SER ASP LYS PRO SEQRES 4 A 422 LEU PRO LEU LEU SER SER PHE GLU TRP CYS SER ILE ASP SEQRES 5 A 422 VAL ASP ASN LYS LYS GLN LEU GLU ASP VAL PHE VAL LEU SEQRES 6 A 422 LEU ASN GLU ASN TYR VAL GLU ASP ARG ASP ALA GLY PHE SEQRES 7 A 422 ARG PHE ASN TYR THR LYS GLU PHE PHE ASN TRP ALA LEU SEQRES 8 A 422 LYS SER PRO GLY TRP LYS LYS ASP TRP HIS ILE GLY VAL SEQRES 9 A 422 ARG VAL LYS GLU THR GLN LYS LEU VAL ALA PHE ILE SER SEQRES 10 A 422 ALA ILE PRO VAL THR LEU GLY VAL ARG GLY LYS GLN VAL SEQRES 11 A 422 PRO SER VAL GLU ILE ASN PHE LEU CYS VAL HIS LYS GLN SEQRES 12 A 422 LEU ARG SER LYS ARG LEU THR PRO VAL LEU ILE LYS GLU SEQRES 13 A 422 ILE THR ARG ARG VAL ASN LYS CYS ASP ILE TRP HIS ALA SEQRES 14 A 422 LEU TYR THR ALA GLY ILE VAL LEU PRO ALA PRO VAL SER SEQRES 15 A 422 THR CYS ARG TYR THR HIS ARG PRO LEU ASN TRP LYS LYS SEQRES 16 A 422 LEU TYR GLU VAL ASP PHE THR GLY LEU PRO ASP GLY HIS SEQRES 17 A 422 THR GLU GLU ASP MET ILE ALA GLU ASN ALA LEU PRO ALA SEQRES 18 A 422 LYS THR LYS THR ALA GLY LEU ARG LYS LEU LYS LYS GLU SEQRES 19 A 422 ASP ILE ASP GLN VAL PHE GLU LEU PHE LYS ARG TYR GLN SEQRES 20 A 422 SER ARG PHE GLU LEU ILE GLN ILE PHE THR LYS GLU GLU SEQRES 21 A 422 PHE GLU HIS ASN PHE ILE GLY GLU GLU SER LEU PRO LEU SEQRES 22 A 422 ASP LYS GLN VAL ILE PHE SER TYR VAL VAL GLU GLN PRO SEQRES 23 A 422 ASP GLY LYS ILE THR ASP PHE PHE SER PHE TYR SER LEU SEQRES 24 A 422 PRO PHE THR ILE LEU ASN ASN THR LYS TYR LYS ASP LEU SEQRES 25 A 422 GLY ILE GLY TYR LEU TYR TYR TYR ALA THR ASP ALA ASP SEQRES 26 A 422 PHE GLN PHE LYS ASP ARG PHE ASP PRO LYS ALA THR LYS SEQRES 27 A 422 ALA LEU LYS THR ARG LEU CYS GLU LEU ILE TYR ASP ALA SEQRES 28 A 422 CYS ILE LEU ALA LYS ASN ALA ASN MET ASP VAL PHE ASN SEQRES 29 A 422 ALA LEU THR SER GLN ASP ASN THR LEU PHE LEU ASP ASP SEQRES 30 A 422 LEU LYS PHE GLY PRO GLY ASP GLY PHE LEU ASN PHE TYR SEQRES 31 A 422 LEU PHE ASN TYR ARG ALA LYS PRO ILE THR GLY GLY LEU SEQRES 32 A 422 ASN PRO ASP ASN SER ASN ASP ILE LYS ARG ARG SER ASN SEQRES 33 A 422 VAL GLY VAL VAL MET LEU HET NHM A 500 64 HET MIM A 700 43 HET GOL A 801 6 HET GOL A 802 6 HET GOL A 803 6 HET GOL A 804 6 HET GOL A 805 6 HET GOL A 806 6 HET GOL A 807 6 HET GOL A 808 6 HET GOL A 809 6 HET GOL A 810 6 HET GOL A 811 6 HET GOL A 812 6 HETNAM NHM S-(2-OXO)PENTADECYLCOA HETNAM MIM [CYCLOHEXYLETHYL]-[[[[4-[2-METHYL-1-IMIDAZOLYL- HETNAM 2 MIM BUTYL]PHENYL]ACETYL]-SERYL]-LYSINYL]-AMINE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 NHM C36 H64 N7 O17 P3 S FORMUL 3 MIM C33 H52 N6 O4 FORMUL 4 GOL 12(C3 H8 O3) FORMUL 16 HOH *34(H2 O) HELIX 1 1 MET A 35 ASP A 37 5 3 HELIX 2 2 TRP A 41 THR A 43 5 3 HELIX 3 3 PRO A 65 ASP A 67 5 3 HELIX 4 4 LYS A 89 ASN A 102 1 14 HELIX 5 5 LYS A 117 ALA A 123 1 7 HELIX 6 6 LYS A 131 TRP A 133 5 3 HELIX 7 7 VAL A 158 GLY A 160 5 3 HELIX 8 8 LYS A 175 LEU A 177 5 3 HELIX 9 9 THR A 183 CYS A 197 1 15 HELIX 10 10 TRP A 226 VAL A 232 1 7 HELIX 11 11 GLU A 243 GLU A 249 1 7 HELIX 12 12 LYS A 266 ARG A 282 5 17 HELIX 13 13 GLU A 292 PHE A 298 1 7 HELIX 14 14 ASP A 358 GLN A 360 5 3 HELIX 15 15 PRO A 367 ASN A 390 1 24 HELIX 16 16 ASN A 404 LEU A 411 1 8 SHEET 1 A 7 PHE A 79 SER A 83 0 SHEET 2 A 7 HIS A 134 VAL A 139 -1 N ARG A 138 O GLU A 80 SHEET 3 A 7 PHE A 148 VAL A 158 -1 N ILE A 149 O ILE A 135 SHEET 4 A 7 LYS A 161 ASN A 169 -1 N ASN A 169 O SER A 150 SHEET 5 A 7 HIS A 201 ALA A 206 1 N HIS A 201 O VAL A 166 SHEET 6 A 7 PHE A 419 PHE A 425 -1 N PHE A 425 O ALA A 202 SHEET 7 A 7 SER A 215 ARG A 218 -1 N CYS A 217 O LEU A 420 SHEET 1 B 2 PHE A 111 PHE A 113 0 SHEET 2 B 2 PHE A 334 ILE A 336 -1 N THR A 335 O ARG A 112 SHEET 1 C 2 LEU A 156 VAL A 158 0 SHEET 2 C 2 LEU A 285 GLN A 287 -1 N ILE A 286 O GLY A 157 SHEET 1 D 5 THR A 220 PRO A 223 0 SHEET 2 D 5 VAL A 395 ALA A 398 -1 N ALA A 398 O THR A 220 SHEET 3 D 5 ILE A 347 LEU A 350 1 N GLY A 348 O VAL A 395 SHEET 4 D 5 ASP A 325 SER A 331 -1 N TYR A 330 O TYR A 349 SHEET 5 D 5 ILE A 311 VAL A 316 -1 N VAL A 316 O ASP A 325 SHEET 1 E 2 ASP A 325 PHE A 327 0 SHEET 2 E 2 TYR A 353 THR A 355 -1 N ALA A 354 O PHE A 326 LINK O2 GOL A 809 OD1 ASP A 132 1555 1555 2.00 SITE 1 AC1 29 HIS A 38 LYS A 39 PHE A 40 TRP A 41 SITE 2 AC1 29 ASN A 102 TYR A 103 VAL A 104 ILE A 168 SITE 3 AC1 29 ASN A 169 PHE A 170 LEU A 171 CYS A 172 SITE 4 AC1 29 VAL A 173 ARG A 178 SER A 179 ARG A 181 SITE 5 AC1 29 LEU A 182 THR A 183 PRO A 184 ILE A 187 SITE 6 AC1 29 THR A 191 TRP A 200 HIS A 201 ALA A 202 SITE 7 AC1 29 TYR A 204 THR A 205 PHE A 425 MIM A 700 SITE 8 AC1 29 HOH A1003 SITE 1 AC2 20 VAL A 104 ASP A 106 ASP A 108 PHE A 113 SITE 2 AC2 20 TYR A 115 ASN A 169 THR A 205 GLY A 207 SITE 3 AC2 20 TYR A 219 HIS A 221 PRO A 223 PHE A 234 SITE 4 AC2 20 THR A 235 PHE A 334 GLY A 416 ASP A 417 SITE 5 AC2 20 GLY A 418 LEU A 455 NHM A 500 HOH A1016 SITE 1 AC3 4 MET A 246 GLU A 249 GOL A 812 HOH A1034 SITE 1 AC4 3 ASP A 132 ASP A 245 GOL A 809 SITE 1 AC5 2 CYS A 197 GOL A 809 SITE 1 AC6 3 HIS A 296 HOH A1043 HOH A1055 SITE 1 AC7 5 LYS A 263 PHE A 298 GLY A 300 ILE A 311 SITE 2 AC7 5 SER A 313 SITE 1 AC8 3 ASP A 270 LYS A 291 ASP A 307 SITE 1 AC9 2 PRO A 58 HIS A 201 SITE 1 BC1 6 GLU A 80 TRP A 81 CYS A 82 SER A 83 SITE 2 BC1 6 GLN A 91 ARG A 138 SITE 1 BC2 6 ASP A 132 THR A 242 GLU A 244 ASP A 245 SITE 2 BC2 6 GOL A 802 GOL A 803 SITE 1 BC3 4 GLU A 317 PRO A 319 ASP A 320 GLY A 321 SITE 1 BC4 3 ASP A 70 LYS A 196 GLU A 244 SITE 1 BC5 5 ASP A 85 HIS A 241 GLU A 249 GOL A 801 SITE 2 BC5 5 HOH A1034 CRYST1 105.400 105.400 106.700 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009488 0.005478 0.000000 0.00000 SCALE2 0.000000 0.010955 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009372 0.00000