HEADER OXIDOREDUCTASE,ELECTRON TRANSPORT 24-OCT-06 2NNH TITLE CYP2C8DH COMPLEXED WITH 2 MOLECULES OF 9-CIS RETINOIC ACID COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYTOCHROME P450 2C8; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: CYPIIC8; P450 FORM 1; P450 MP-12/MP-20; P450 IIC2; S- COMPND 5 MEPHENYTOIN 4-HYDROXYLASE; COMPND 6 EC: 1.14.14.1; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CYP2C8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PCW KEYWDS CYP2C8; HUMAN P450 2C8; MONOOXYGENASES; SUBSTRATE COMPLEX; PALMITIC KEYWDS 2 ACID; 9-CIS RETINOIC ACID; PANRETIN, OXIDOREDUCTASE, ELECTRON KEYWDS 3 TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR G.A.SCHOCH,J.K.YANO,C.D.STOUT,E.F.JOHNSON REVDAT 6 30-AUG-23 2NNH 1 REMARK SEQADV REVDAT 5 16-NOV-16 2NNH 1 HET HETATM HETNAM VERSN REVDAT 4 09-JUN-09 2NNH 1 REVDAT REVDAT 3 24-FEB-09 2NNH 1 VERSN REVDAT 2 02-DEC-08 2NNH 1 JRNL REVDAT 1 23-OCT-07 2NNH 0 JRNL AUTH G.A.SCHOCH,J.K.YANO,S.SANSEN,P.M.DANSETTE,C.D.STOUT, JRNL AUTH 2 E.F.JOHNSON JRNL TITL DETERMINANTS OF CYTOCHROME P450 2C8 SUBSTRATE BINDING: JRNL TITL 2 STRUCTURES OF COMPLEXES WITH MONTELUKAST, TROGLITAZONE, JRNL TITL 3 FELODIPINE, AND 9-CIS-RETINOIC ACID. JRNL REF J.BIOL.CHEM. V. 283 17227 2008 JRNL REFN ISSN 0021-9258 JRNL PMID 18413310 JRNL DOI 10.1074/JBC.M802180200 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 51297 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.244 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 48714 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 7386 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 220 REMARK 3 SOLVENT ATOMS : 88 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.265 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.127 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.761 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.672 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NNH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000040076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL11-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : SIDE SCATTERING BENT CUBE-ROOT I REMARK 200 -BEAM SINGLE CRYSTAL; ASYMMETRIC REMARK 200 CUT 4.965 DEGS REMARK 200 OPTICS : FLAT MIRROR (VERTICAL FOCUSING); REMARK 200 SINGLE CRYSTAL SI(111) BENT REMARK 200 MONOCHROMATOR (HO RIZONTAL REMARK 200 FOCUSING) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 51297 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07900 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 7.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.67 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.4 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.45000 REMARK 200 <I/SIGMA(I)> FOR SHELL : 1.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: 1PQ2 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 68.37 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.89 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, HEPES, LISO4, MEOH, PH 7.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 69.90500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 81.81000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 69.90500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 81.81000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 19 REMARK 465 ALA A 20 REMARK 465 LYS A 21 REMARK 465 LYS A 22 REMARK 465 THR A 23 REMARK 465 SER A 24 REMARK 465 SER A 25 REMARK 465 LYS A 26 REMARK 465 GLY A 27 REMARK 465 HIS A 491 REMARK 465 HIS A 492 REMARK 465 HIS A 493 REMARK 465 HIS A 494 REMARK 465 MET B 19 REMARK 465 ALA B 20 REMARK 465 LYS B 21 REMARK 465 LYS B 22 REMARK 465 THR B 23 REMARK 465 SER B 24 REMARK 465 SER B 25 REMARK 465 LYS B 26 REMARK 465 GLY B 27 REMARK 465 HIS B 491 REMARK 465 HIS B 492 REMARK 465 HIS B 493 REMARK 465 HIS B 494 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 363 C - N - CA ANGL. DEV. = 9.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 43 31.41 -83.57 REMARK 500 ALA A 86 -70.74 -74.76 REMARK 500 ILE A 88 -71.53 -90.44 REMARK 500 ASN A 90 39.57 -97.28 REMARK 500 ASN A 99 75.39 66.33 REMARK 500 ILE A 106 -72.06 -94.47 REMARK 500 LYS A 108 28.52 42.52 REMARK 500 GLN A 184 -80.08 -56.25 REMARK 500 ASP A 191 98.39 -67.47 REMARK 500 GLN A 192 -33.50 -37.74 REMARK 500 VAL A 257 -18.99 -48.92 REMARK 500 ASP A 262 -163.46 -167.07 REMARK 500 THR A 299 -70.88 -90.65 REMARK 500 HIS A 316 79.61 -119.62 REMARK 500 ARG A 377 -94.19 46.54 REMARK 500 PRO A 402 127.26 -39.00 REMARK 500 ASN A 403 60.00 60.19 REMARK 500 SER A 429 -158.67 75.44 REMARK 500 CYS A 435 123.72 -34.95 REMARK 500 LYS A 474 46.44 -141.65 REMARK 500 PRO B 31 173.64 -58.04 REMARK 500 ILE B 45 -153.64 -119.97 REMARK 500 ASP B 49 62.80 -108.72 REMARK 500 ILE B 88 -68.48 -96.28 REMARK 500 ASP B 89 37.11 -73.92 REMARK 500 ASN B 90 13.52 179.35 REMARK 500 ASN B 99 80.10 65.92 REMARK 500 ILE B 106 -67.05 -96.02 REMARK 500 PHE B 134 51.92 -108.50 REMARK 500 ALA B 161 17.77 52.22 REMARK 500 ASN B 193 -18.83 -49.42 REMARK 500 PRO B 220 -30.38 -32.23 REMARK 500 ALA B 253 33.25 -75.54 REMARK 500 SER B 254 4.17 -172.46 REMARK 500 ASN B 259 106.44 -171.51 REMARK 500 LYS B 279 57.73 -106.43 REMARK 500 THR B 299 -68.94 -93.71 REMARK 500 ARG B 333 31.49 -96.21 REMARK 500 MET B 345 65.72 -116.11 REMARK 500 ASP B 360 59.91 33.72 REMARK 500 ARG B 377 -120.09 67.36 REMARK 500 LEU B 390 92.45 -63.33 REMARK 500 SER B 429 179.05 74.73 REMARK 500 CYS B 435 123.19 -39.34 REMARK 500 LEU B 467 108.65 -51.78 REMARK 500 LYS B 474 -41.74 -155.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 435 SG REMARK 620 2 HEM A 500 NA 93.5 REMARK 620 3 HEM A 500 NB 93.4 89.2 REMARK 620 4 HEM A 500 NC 83.5 177.0 91.7 REMARK 620 5 HEM A 500 ND 91.4 90.3 175.2 89.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM B 500 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 435 SG REMARK 620 2 HEM B 500 NA 95.1 REMARK 620 3 HEM B 500 NB 90.1 88.9 REMARK 620 4 HEM B 500 NC 88.6 176.3 91.4 REMARK 620 5 HEM B 500 ND 92.5 90.2 177.3 89.4 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9CR A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9CR A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9CR B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 9CR B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PLM A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NNI RELATED DB: PDB REMARK 900 RELATED ID: 2NNJ RELATED DB: PDB DBREF 2NNH A 28 490 UNP P10632 CP2C8_HUMAN 28 490 DBREF 2NNH B 28 490 UNP P10632 CP2C8_HUMAN 28 490 SEQADV 2NNH MET A 19 UNP P10632 EXPRESSION TAG SEQADV 2NNH ALA A 20 UNP P10632 EXPRESSION TAG SEQADV 2NNH LYS A 21 UNP P10632 EXPRESSION TAG SEQADV 2NNH LYS A 22 UNP P10632 EXPRESSION TAG SEQADV 2NNH THR A 23 UNP P10632 EXPRESSION TAG SEQADV 2NNH SER A 24 UNP P10632 EXPRESSION TAG SEQADV 2NNH SER A 25 UNP P10632 EXPRESSION TAG SEQADV 2NNH LYS A 26 UNP P10632 EXPRESSION TAG SEQADV 2NNH GLY A 27 UNP P10632 EXPRESSION TAG SEQADV 2NNH HIS A 491 UNP P10632 EXPRESSION TAG SEQADV 2NNH HIS A 492 UNP P10632 EXPRESSION TAG SEQADV 2NNH HIS A 493 UNP P10632 EXPRESSION TAG SEQADV 2NNH HIS A 494 UNP P10632 EXPRESSION TAG SEQADV 2NNH MET B 19 UNP P10632 EXPRESSION TAG SEQADV 2NNH ALA B 20 UNP P10632 EXPRESSION TAG SEQADV 2NNH LYS B 21 UNP P10632 EXPRESSION TAG SEQADV 2NNH LYS B 22 UNP P10632 EXPRESSION TAG SEQADV 2NNH THR B 23 UNP P10632 EXPRESSION TAG SEQADV 2NNH SER B 24 UNP P10632 EXPRESSION TAG SEQADV 2NNH SER B 25 UNP P10632 EXPRESSION TAG SEQADV 2NNH LYS B 26 UNP P10632 EXPRESSION TAG SEQADV 2NNH GLY B 27 UNP P10632 EXPRESSION TAG SEQADV 2NNH HIS B 491 UNP P10632 EXPRESSION TAG SEQADV 2NNH HIS B 492 UNP P10632 EXPRESSION TAG SEQADV 2NNH HIS B 493 UNP P10632 EXPRESSION TAG SEQADV 2NNH HIS B 494 UNP P10632 EXPRESSION TAG SEQRES 1 A 476 MET ALA LYS LYS THR SER SER LYS GLY LYS LEU PRO PRO SEQRES 2 A 476 GLY PRO THR PRO LEU PRO ILE ILE GLY ASN MET LEU GLN SEQRES 3 A 476 ILE ASP VAL LYS ASP ILE CYS LYS SER PHE THR ASN PHE SEQRES 4 A 476 SER LYS VAL TYR GLY PRO VAL PHE THR VAL TYR PHE GLY SEQRES 5 A 476 MET ASN PRO ILE VAL VAL PHE HIS GLY TYR GLU ALA VAL SEQRES 6 A 476 LYS GLU ALA LEU ILE ASP ASN GLY GLU GLU PHE SER GLY SEQRES 7 A 476 ARG GLY ASN SER PRO ILE SER GLN ARG ILE THR LYS GLY SEQRES 8 A 476 LEU GLY ILE ILE SER SER ASN GLY LYS ARG TRP LYS GLU SEQRES 9 A 476 ILE ARG ARG PHE SER LEU THR THR LEU ARG ASN PHE GLY SEQRES 10 A 476 MET GLY LYS ARG SER ILE GLU ASP ARG VAL GLN GLU GLU SEQRES 11 A 476 ALA HIS CYS LEU VAL GLU GLU LEU ARG LYS THR LYS ALA SEQRES 12 A 476 SER PRO CYS ASP PRO THR PHE ILE LEU GLY CYS ALA PRO SEQRES 13 A 476 CYS ASN VAL ILE CYS SER VAL VAL PHE GLN LYS ARG PHE SEQRES 14 A 476 ASP TYR LYS ASP GLN ASN PHE LEU THR LEU MET LYS ARG SEQRES 15 A 476 PHE ASN GLU ASN PHE ARG ILE LEU ASN SER PRO TRP ILE SEQRES 16 A 476 GLN VAL CYS ASN ASN PHE PRO LEU LEU ILE ASP CYS PHE SEQRES 17 A 476 PRO GLY THR HIS ASN LYS VAL LEU LYS ASN VAL ALA LEU SEQRES 18 A 476 THR ARG SER TYR ILE ARG GLU LYS VAL LYS GLU HIS GLN SEQRES 19 A 476 ALA SER LEU ASP VAL ASN ASN PRO ARG ASP PHE ILE ASP SEQRES 20 A 476 CYS PHE LEU ILE LYS MET GLU GLN GLU LYS ASP ASN GLN SEQRES 21 A 476 LYS SER GLU PHE ASN ILE GLU ASN LEU VAL GLY THR VAL SEQRES 22 A 476 ALA ASP LEU PHE VAL ALA GLY THR GLU THR THR SER THR SEQRES 23 A 476 THR LEU ARG TYR GLY LEU LEU LEU LEU LEU LYS HIS PRO SEQRES 24 A 476 GLU VAL THR ALA LYS VAL GLN GLU GLU ILE ASP HIS VAL SEQRES 25 A 476 ILE GLY ARG HIS ARG SER PRO CYS MET GLN ASP ARG SER SEQRES 26 A 476 HIS MET PRO TYR THR ASP ALA VAL VAL HIS GLU ILE GLN SEQRES 27 A 476 ARG TYR SER ASP LEU VAL PRO THR GLY VAL PRO HIS ALA SEQRES 28 A 476 VAL THR THR ASP THR LYS PHE ARG ASN TYR LEU ILE PRO SEQRES 29 A 476 LYS GLY THR THR ILE MET ALA LEU LEU THR SER VAL LEU SEQRES 30 A 476 HIS ASP ASP LYS GLU PHE PRO ASN PRO ASN ILE PHE ASP SEQRES 31 A 476 PRO GLY HIS PHE LEU ASP LYS ASN GLY ASN PHE LYS LYS SEQRES 32 A 476 SER ASP TYR PHE MET PRO PHE SER ALA GLY LYS ARG ILE SEQRES 33 A 476 CYS ALA GLY GLU GLY LEU ALA ARG MET GLU LEU PHE LEU SEQRES 34 A 476 PHE LEU THR THR ILE LEU GLN ASN PHE ASN LEU LYS SER SEQRES 35 A 476 VAL ASP ASP LEU LYS ASN LEU ASN THR THR ALA VAL THR SEQRES 36 A 476 LYS GLY ILE VAL SER LEU PRO PRO SER TYR GLN ILE CYS SEQRES 37 A 476 PHE ILE PRO VAL HIS HIS HIS HIS SEQRES 1 B 476 MET ALA LYS LYS THR SER SER LYS GLY LYS LEU PRO PRO SEQRES 2 B 476 GLY PRO THR PRO LEU PRO ILE ILE GLY ASN MET LEU GLN SEQRES 3 B 476 ILE ASP VAL LYS ASP ILE CYS LYS SER PHE THR ASN PHE SEQRES 4 B 476 SER LYS VAL TYR GLY PRO VAL PHE THR VAL TYR PHE GLY SEQRES 5 B 476 MET ASN PRO ILE VAL VAL PHE HIS GLY TYR GLU ALA VAL SEQRES 6 B 476 LYS GLU ALA LEU ILE ASP ASN GLY GLU GLU PHE SER GLY SEQRES 7 B 476 ARG GLY ASN SER PRO ILE SER GLN ARG ILE THR LYS GLY SEQRES 8 B 476 LEU GLY ILE ILE SER SER ASN GLY LYS ARG TRP LYS GLU SEQRES 9 B 476 ILE ARG ARG PHE SER LEU THR THR LEU ARG ASN PHE GLY SEQRES 10 B 476 MET GLY LYS ARG SER ILE GLU ASP ARG VAL GLN GLU GLU SEQRES 11 B 476 ALA HIS CYS LEU VAL GLU GLU LEU ARG LYS THR LYS ALA SEQRES 12 B 476 SER PRO CYS ASP PRO THR PHE ILE LEU GLY CYS ALA PRO SEQRES 13 B 476 CYS ASN VAL ILE CYS SER VAL VAL PHE GLN LYS ARG PHE SEQRES 14 B 476 ASP TYR LYS ASP GLN ASN PHE LEU THR LEU MET LYS ARG SEQRES 15 B 476 PHE ASN GLU ASN PHE ARG ILE LEU ASN SER PRO TRP ILE SEQRES 16 B 476 GLN VAL CYS ASN ASN PHE PRO LEU LEU ILE ASP CYS PHE SEQRES 17 B 476 PRO GLY THR HIS ASN LYS VAL LEU LYS ASN VAL ALA LEU SEQRES 18 B 476 THR ARG SER TYR ILE ARG GLU LYS VAL LYS GLU HIS GLN SEQRES 19 B 476 ALA SER LEU ASP VAL ASN ASN PRO ARG ASP PHE ILE ASP SEQRES 20 B 476 CYS PHE LEU ILE LYS MET GLU GLN GLU LYS ASP ASN GLN SEQRES 21 B 476 LYS SER GLU PHE ASN ILE GLU ASN LEU VAL GLY THR VAL SEQRES 22 B 476 ALA ASP LEU PHE VAL ALA GLY THR GLU THR THR SER THR SEQRES 23 B 476 THR LEU ARG TYR GLY LEU LEU LEU LEU LEU LYS HIS PRO SEQRES 24 B 476 GLU VAL THR ALA LYS VAL GLN GLU GLU ILE ASP HIS VAL SEQRES 25 B 476 ILE GLY ARG HIS ARG SER PRO CYS MET GLN ASP ARG SER SEQRES 26 B 476 HIS MET PRO TYR THR ASP ALA VAL VAL HIS GLU ILE GLN SEQRES 27 B 476 ARG TYR SER ASP LEU VAL PRO THR GLY VAL PRO HIS ALA SEQRES 28 B 476 VAL THR THR ASP THR LYS PHE ARG ASN TYR LEU ILE PRO SEQRES 29 B 476 LYS GLY THR THR ILE MET ALA LEU LEU THR SER VAL LEU SEQRES 30 B 476 HIS ASP ASP LYS GLU PHE PRO ASN PRO ASN ILE PHE ASP SEQRES 31 B 476 PRO GLY HIS PHE LEU ASP LYS ASN GLY ASN PHE LYS LYS SEQRES 32 B 476 SER ASP TYR PHE MET PRO PHE SER ALA GLY LYS ARG ILE SEQRES 33 B 476 CYS ALA GLY GLU GLY LEU ALA ARG MET GLU LEU PHE LEU SEQRES 34 B 476 PHE LEU THR THR ILE LEU GLN ASN PHE ASN LEU LYS SER SEQRES 35 B 476 VAL ASP ASP LEU LYS ASN LEU ASN THR THR ALA VAL THR SEQRES 36 B 476 LYS GLY ILE VAL SER LEU PRO PRO SER TYR GLN ILE CYS SEQRES 37 B 476 PHE ILE PRO VAL HIS HIS HIS HIS HET SO4 A 505 5 HET HEM A 500 43 HET 9CR A 501 22 HET 9CR A 502 22 HET PLM A 503 18 HET SO4 B 504 5 HET HEM B 500 43 HET 9CR B 501 22 HET 9CR B 502 22 HET PLM B 503 18 HETNAM SO4 SULFATE ION HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM 9CR (9CIS)-RETINOIC ACID HETNAM PLM PALMITIC ACID HETSYN HEM HEME FORMUL 3 SO4 2(O4 S 2-) FORMUL 4 HEM 2(C34 H32 FE N4 O4) FORMUL 5 9CR 4(C20 H28 O2) FORMUL 7 PLM 2(C16 H32 O2) FORMUL 13 HOH *88(H2 O) HELIX 1 1 ASN A 41 ILE A 45 5 5 HELIX 2 2 ASP A 49 GLY A 62 1 14 HELIX 3 3 HIS A 78 ILE A 88 1 11 HELIX 4 4 SER A 100 THR A 107 1 8 HELIX 5 5 ASN A 116 LEU A 131 1 16 HELIX 6 6 SER A 140 LYS A 158 1 19 HELIX 7 7 PRO A 166 PHE A 183 1 18 HELIX 8 8 ASP A 191 ASN A 209 1 19 HELIX 9 9 PRO A 211 PHE A 219 1 9 HELIX 10 10 PRO A 220 CYS A 225 5 6 HELIX 11 11 PHE A 226 ALA A 253 1 28 HELIX 12 12 ASP A 262 LYS A 275 1 14 HELIX 13 13 ASN A 283 THR A 299 1 17 HELIX 14 14 THR A 299 HIS A 316 1 18 HELIX 15 15 HIS A 316 ILE A 331 1 16 HELIX 16 16 CYS A 338 HIS A 344 5 7 HELIX 17 17 MET A 345 ASP A 360 1 16 HELIX 18 18 LEU A 390 HIS A 396 1 7 HELIX 19 19 ASP A 408 LEU A 413 5 6 HELIX 20 20 ALA A 430 ILE A 434 5 5 HELIX 21 21 GLY A 437 ASN A 455 1 19 HELIX 22 22 ASN B 41 ILE B 45 5 5 HELIX 23 23 ASP B 49 GLY B 62 1 14 HELIX 24 24 GLY B 79 ILE B 88 1 10 HELIX 25 25 SER B 100 THR B 107 1 8 HELIX 26 26 ASN B 116 LEU B 131 1 16 HELIX 27 27 SER B 140 LYS B 158 1 19 HELIX 28 28 PRO B 166 PHE B 183 1 18 HELIX 29 29 ASP B 191 ASN B 209 1 19 HELIX 30 30 SER B 210 PHE B 219 1 10 HELIX 31 31 PRO B 220 CYS B 225 5 6 HELIX 32 32 PHE B 226 ALA B 253 1 28 HELIX 33 33 ASP B 262 GLN B 273 1 12 HELIX 34 34 ASN B 283 THR B 299 1 17 HELIX 35 35 THR B 299 HIS B 316 1 18 HELIX 36 36 HIS B 316 GLY B 332 1 17 HELIX 37 37 CYS B 338 HIS B 344 5 7 HELIX 38 38 MET B 345 ASP B 360 1 16 HELIX 39 39 LEU B 390 HIS B 396 1 7 HELIX 40 40 ASP B 408 LEU B 413 5 6 HELIX 41 41 GLY B 437 ASN B 455 1 19 SHEET 1 A 4 VAL A 64 PHE A 69 0 SHEET 2 A 4 ASN A 72 PHE A 77 -1 O ILE A 74 N VAL A 67 SHEET 3 A 4 THR A 386 ALA A 389 1 O MET A 388 N PHE A 77 SHEET 4 A 4 HIS A 368 ALA A 369 -1 N HIS A 368 O ILE A 387 SHEET 1 B 3 PRO A 163 CYS A 164 0 SHEET 2 B 3 ILE A 485 PRO A 489 -1 O ILE A 485 N CYS A 164 SHEET 3 B 3 PHE A 456 LYS A 459 -1 N LYS A 459 O CYS A 486 SHEET 1 C 2 THR A 374 PHE A 376 0 SHEET 2 C 2 TYR A 379 ILE A 381 -1 O ILE A 381 N THR A 374 SHEET 1 D 4 VAL B 64 PHE B 69 0 SHEET 2 D 4 ASN B 72 PHE B 77 -1 O ILE B 74 N VAL B 67 SHEET 3 D 4 THR B 386 ALA B 389 1 O MET B 388 N PHE B 77 SHEET 4 D 4 HIS B 368 ALA B 369 -1 N HIS B 368 O ILE B 387 SHEET 1 E 2 THR B 374 PHE B 376 0 SHEET 2 E 2 TYR B 379 ILE B 381 -1 O ILE B 381 N THR B 374 SHEET 1 F 2 PHE B 456 LYS B 459 0 SHEET 2 F 2 CYS B 486 PRO B 489 -1 O CYS B 486 N LYS B 459 LINK SG CYS A 435 FE HEM A 500 1555 1555 2.28 LINK SG CYS B 435 FE HEM B 500 1555 1555 2.28 SITE 1 AC1 2 ARG B 132 ASN B 133 SITE 1 AC2 2 ARG A 132 ASN A 133 SITE 1 AC3 21 ARG A 97 ILE A 112 TRP A 120 ARG A 124 SITE 2 AC3 21 ILE A 178 ALA A 297 GLY A 298 THR A 301 SITE 3 AC3 21 THR A 302 THR A 305 LEU A 361 VAL A 366 SITE 4 AC3 21 HIS A 368 PRO A 427 PHE A 428 SER A 429 SITE 5 AC3 21 ARG A 433 CYS A 435 LEU A 440 ALA A 441 SITE 6 AC3 21 9CR A 501 SITE 1 AC4 20 ARG B 97 ILE B 112 ILE B 113 TRP B 120 SITE 2 AC4 20 ARG B 124 ALA B 297 GLY B 298 THR B 301 SITE 3 AC4 20 THR B 302 THR B 305 GLN B 356 LEU B 361 SITE 4 AC4 20 VAL B 366 HIS B 368 PRO B 427 PHE B 428 SITE 5 AC4 20 SER B 429 ARG B 433 CYS B 435 9CR B 501 SITE 1 AC5 11 ARG A 97 GLY A 98 ASN A 99 SER A 100 SITE 2 AC5 11 SER A 103 ILE A 113 THR A 301 VAL A 366 SITE 3 AC5 11 HEM A 500 9CR A 502 HOH A 541 SITE 1 AC6 9 SER A 100 ASN A 204 LEU A 208 ASN A 217 SITE 2 AC6 9 VAL A 237 ARG A 241 VAL A 296 ILE A 476 SITE 3 AC6 9 9CR A 501 SITE 1 AC7 10 GLY B 98 ASN B 99 SER B 100 ILE B 113 SITE 2 AC7 10 THR B 301 VAL B 366 PRO B 367 HEM B 500 SITE 3 AC7 10 9CR B 502 HOH B 534 SITE 1 AC8 7 SER B 100 ASN B 204 LEU B 208 ARG B 241 SITE 2 AC8 7 VAL B 296 ILE B 476 9CR B 501 SITE 1 AC9 10 ARG A 105 ILE A 106 TRP A 212 CYS A 216 SITE 2 AC9 10 THR A 229 HOH A 535 PHE B 226 PRO B 227 SITE 3 AC9 10 GLY B 228 THR B 229 SITE 1 BC1 10 PHE A 226 PRO A 227 GLY A 228 THR A 229 SITE 2 BC1 10 ILE B 102 ILE B 106 TRP B 212 PHE B 226 SITE 3 BC1 10 HIS B 230 LEU B 234 CRYST1 139.810 163.620 73.555 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007153 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006112 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013595 0.00000