HEADER PROTEIN FIBRIL 24-OCT-06 2NNT TITLE GENERAL STRUCTURAL MOTIFS OF AMYLOID PROTOFILAMENTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTION ELONGATION REGULATOR 1; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: SECOND WW DOMAIN; COMPND 5 SYNONYM: TATA BOX-BINDING PROTEIN- ASSOCIATED FACTOR 2S, COMPND 6 TRANSCRIPTION FACTOR CA150; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: TCERG1, CA150, TAF2S; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PGAT2 KEYWDS FIBRE, BETA-HAIRPIN, FBP28 PROTOFILAMENT, CA150 SECOND WW DOMAIN, KEYWDS 2 PROTEIN FIBRIL EXPDTA SOLID-STATE NMR NUMMDL 10 AUTHOR N.FERGUSON,J.BECKER,H.TIDOW,S.TREMMEL,T.D.SHARPE,G.KRAUSE,J.FLINDERS, AUTHOR 2 M.PETROVICH,J.BERRIMAN,H.OSCHKINAT,A.R.FERSHT REVDAT 5 27-DEC-23 2NNT 1 REMARK REVDAT 4 20-OCT-21 2NNT 1 REMARK SEQADV REVDAT 3 08-SEP-09 2NNT 1 EXPDTA REVDAT 2 24-FEB-09 2NNT 1 VERSN REVDAT 1 14-NOV-06 2NNT 0 JRNL AUTH N.FERGUSON,J.BECKER,H.TIDOW,S.TREMMEL,T.D.SHARPE,G.KRAUSE, JRNL AUTH 2 J.FLINDERS,M.PETROVICH,J.BERRIMAN,H.OSCHKINAT,A.R.FERSHT JRNL TITL GENERAL STRUCTURAL MOTIFS OF AMYLOID PROTOFILAMENTS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 103 16248 2006 JRNL REFN ISSN 0027-8424 JRNL PMID 17060612 JRNL DOI 10.1073/PNAS.0607815103 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : TOPSPIN 1.3, AMBER 7.0 REMARK 3 AUTHORS : BRUKER (TOPSPIN), CASE, D.A. ET AL. (AMBER) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: SIMULATED ANNEALING WAS PERFORMED WITH REMARK 3 25 MAS-NMR DERIVED LONG RANGE DISTANCE CONSTRAINTS AND HYDROGEND REMARK 3 BOND CONSTRAINTS BETWEEN THE BETA STRANDS OF 6 REPEAT UNITS OF REMARK 3 THE PROTOFILAMENT. CONFORMER (RESIDUES 0-30; 0=M OF THE N- REMARK 3 TERMINAL GSM TAG) OF LOWEST ENERGY OF THE FOUR INNER REPEAT REMARK 3 UNITS WAS SUBJECTED TO A 1 NS MOLECULAR DYNAMICS SIMULATION IN REMARK 3 WATER. TO DISTINGUISH THE RESIDUES PER REPEAT UNIT, FOR REMARK 3 ANNOTATION AN INITIAL DIGID AS HUNDRED IS ADDED , SUCH AS A: 200- REMARK 3 230, B: 300-330, C: 400-430, D: 500-530) REMARK 4 REMARK 4 2NNT COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000040088. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 285 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : UNIFORM 13C,15N LABELING, 15 MG REMARK 210 FIBRE IN PHOSPHATE BUFFER; REMARK 210 UNIFORM 2H,13C,15N LABELING, 15 REMARK 210 MG FIBRE IN PHOSPHATE BUFFER; REMARK 210 UNIFORM 15N LABELING, 13C REMARK 210 LABELING IS BASED ON 1,3[13C]- REMARK 210 GLYCEROL AS CARBON SOURCE FOR REMARK 210 THE BACTERIA, 15 MG FIBRE IN REMARK 210 PHOSPHATE BUFFER; UNIFORM 15N REMARK 210 LABELING, 13C LABELING IS BASED REMARK 210 ON 2[13C]-GLYCEROL AS CARBON REMARK 210 SOURCE FOR THE BACTERIA, 15 MG REMARK 210 FIBRE IN PHOSPHATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : MAS CP-PDSD REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : SPARKY 3.100, AMBER 7.0 REMARK 210 METHOD USED : SIMULATED ANNEALING, MOLECULAR REMARK 210 DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 30 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: 4MM AND 3.2MM TRIPLE RESONANCE MAS PROBES WERE USED AND REMARK 210 SPINNING OF 10.5 KHZ WAS APPLIED. REMARK 217 REMARK 217 SOLID STATE NMR STUDY REMARK 217 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLID REMARK 217 STATE NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 217 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 217 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-10 REMARK 465 RES C SSSEQI REMARK 465 GLY A 198 REMARK 465 SER A 199 REMARK 465 GLU A 231 REMARK 465 LYS A 232 REMARK 465 PRO A 233 REMARK 465 GLN A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 LYS A 237 REMARK 465 GLY B 298 REMARK 465 SER B 299 REMARK 465 GLU B 331 REMARK 465 LYS B 332 REMARK 465 PRO B 333 REMARK 465 GLN B 334 REMARK 465 GLU B 335 REMARK 465 LEU B 336 REMARK 465 LYS B 337 REMARK 465 GLY C 398 REMARK 465 SER C 399 REMARK 465 GLU C 431 REMARK 465 LYS C 432 REMARK 465 PRO C 433 REMARK 465 GLN C 434 REMARK 465 GLU C 435 REMARK 465 LEU C 436 REMARK 465 LYS C 437 REMARK 465 GLY D 498 REMARK 465 SER D 499 REMARK 465 GLU D 531 REMARK 465 LYS D 532 REMARK 465 PRO D 533 REMARK 465 GLN D 534 REMARK 465 GLU D 535 REMARK 465 LEU D 536 REMARK 465 LYS D 537 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER C 428 O ALA D 502 1.46 REMARK 500 OE1 GLU B 327 HG1 THR B 329 1.51 REMARK 500 HG1 THR B 303 O GLU B 327 1.54 REMARK 500 HG1 THR A 229 OE2 GLU B 327 1.54 REMARK 500 O VAL C 405 HG SER D 506 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 1 TRP D 530 CE2 TRP D 530 CD2 0.081 REMARK 500 2 GLU B 307 CG GLU B 307 CD 0.101 REMARK 500 3 TYR D 520 CZ TYR D 520 CE2 0.086 REMARK 500 4 TYR A 220 CE2 TYR A 220 CD2 0.109 REMARK 500 4 SER C 406 CB SER C 406 OG 0.100 REMARK 500 5 SER A 228 CA SER A 228 CB 0.124 REMARK 500 6 TYR A 220 CG TYR A 220 CD2 0.086 REMARK 500 7 TYR D 521 CG TYR D 521 CD2 0.084 REMARK 500 8 TRP D 508 CE2 TRP D 508 CD2 0.075 REMARK 500 8 TYR D 511 CB TYR D 511 CG 0.097 REMARK 500 8 TYR D 511 CE1 TYR D 511 CZ 0.079 REMARK 500 9 TYR A 221 CZ TYR A 221 CE2 0.084 REMARK 500 9 TYR D 511 CG TYR D 511 CD2 0.109 REMARK 500 10 TYR D 511 CG TYR D 511 CD2 0.079 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 1 VAL A 205 CG1 - CB - CG2 ANGL. DEV. = -12.6 DEGREES REMARK 500 1 TYR A 221 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 1 TYR A 221 CB - CG - CD1 ANGL. DEV. = -3.6 DEGREES REMARK 500 1 TRP A 230 NE1 - CE2 - CD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 1 TRP A 230 CE2 - CD2 - CG ANGL. DEV. = 5.3 DEGREES REMARK 500 1 TRP B 308 CD1 - NE1 - CE2 ANGL. DEV. = 6.3 DEGREES REMARK 500 1 TRP B 308 NE1 - CE2 - CD2 ANGL. DEV. = -6.8 DEGREES REMARK 500 1 TYR B 321 CB - CA - C ANGL. DEV. = 12.2 DEGREES REMARK 500 1 GLU B 327 OE1 - CD - OE2 ANGL. DEV. = -7.3 DEGREES REMARK 500 1 TRP C 408 NE1 - CE2 - CD2 ANGL. DEV. = -6.4 DEGREES REMARK 500 1 TYR C 411 CB - CG - CD1 ANGL. DEV. = -4.2 DEGREES REMARK 500 1 TYR C 420 CG - CD1 - CE1 ANGL. DEV. = -6.8 DEGREES REMARK 500 1 TYR D 521 CB - CG - CD1 ANGL. DEV. = -4.3 DEGREES REMARK 500 2 ARG A 224 NE - CZ - NH2 ANGL. DEV. = -4.4 DEGREES REMARK 500 2 TRP A 230 CD1 - NE1 - CE2 ANGL. DEV. = 5.9 DEGREES REMARK 500 2 TYR B 311 CG - CD2 - CE2 ANGL. DEV. = -5.0 DEGREES REMARK 500 2 THR B 313 CA - CB - CG2 ANGL. DEV. = 9.0 DEGREES REMARK 500 2 PHE B 319 CB - CG - CD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 2 PHE B 319 CB - CG - CD1 ANGL. DEV. = 4.7 DEGREES REMARK 500 2 TYR C 411 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 2 ASP C 415 CB - CG - OD1 ANGL. DEV. = 6.4 DEGREES REMARK 500 2 PHE C 419 CB - CG - CD1 ANGL. DEV. = -4.8 DEGREES REMARK 500 2 TYR C 421 CG - CD2 - CE2 ANGL. DEV. = -5.2 DEGREES REMARK 500 2 TRP C 430 NE1 - CE2 - CZ2 ANGL. DEV. = 7.2 DEGREES REMARK 500 2 ARG D 524 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 2 LEU D 526 CB - CG - CD1 ANGL. DEV. = 11.1 DEGREES REMARK 500 3 TYR A 211 CB - CG - CD1 ANGL. DEV. = 3.9 DEGREES REMARK 500 3 ARG A 224 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 3 ARG A 224 NE - CZ - NH2 ANGL. DEV. = -4.7 DEGREES REMARK 500 3 TYR B 320 CB - CG - CD1 ANGL. DEV. = -4.0 DEGREES REMARK 500 3 ARG B 324 NE - CZ - NH2 ANGL. DEV. = -5.9 DEGREES REMARK 500 3 TRP B 330 CD1 - NE1 - CE2 ANGL. DEV. = 7.7 DEGREES REMARK 500 3 TYR C 411 CB - CG - CD1 ANGL. DEV. = -6.9 DEGREES REMARK 500 3 TYR C 411 CG - CD1 - CE1 ANGL. DEV. = -7.7 DEGREES REMARK 500 3 TYR C 411 CD1 - CE1 - CZ ANGL. DEV. = 7.0 DEGREES REMARK 500 3 ARG C 424 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 3 THR D 503 CA - CB - CG2 ANGL. DEV. = 8.5 DEGREES REMARK 500 3 SER D 506 N - CA - CB ANGL. DEV. = -9.7 DEGREES REMARK 500 3 THR D 509 CA - CB - CG2 ANGL. DEV. = -10.9 DEGREES REMARK 500 3 ASP D 515 CB - CG - OD1 ANGL. DEV. = -6.3 DEGREES REMARK 500 3 TYR D 520 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 3 ARG D 524 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 3 TRP D 530 CD1 - CG - CD2 ANGL. DEV. = -5.8 DEGREES REMARK 500 4 PHE A 219 CB - CG - CD2 ANGL. DEV. = 5.8 DEGREES REMARK 500 4 PHE A 219 CB - CG - CD1 ANGL. DEV. = -7.3 DEGREES REMARK 500 4 TYR A 220 CB - CG - CD2 ANGL. DEV. = 4.7 DEGREES REMARK 500 4 TYR A 221 CB - CG - CD1 ANGL. DEV. = -4.7 DEGREES REMARK 500 4 TYR A 221 CG - CD2 - CE2 ANGL. DEV. = -5.2 DEGREES REMARK 500 4 TRP B 308 CB - CG - CD2 ANGL. DEV. = 8.5 DEGREES REMARK 500 4 GLU B 310 OE1 - CD - OE2 ANGL. DEV. = -9.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 182 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A 217 -53.25 -161.00 REMARK 500 1 ALA B 302 -147.03 81.62 REMARK 500 1 LYS B 317 -42.78 -176.34 REMARK 500 1 SER C 406 66.08 -101.69 REMARK 500 1 LYS C 417 -12.86 -41.70 REMARK 500 1 SER D 506 89.29 -172.80 REMARK 500 1 TRP D 508 75.91 -102.06 REMARK 500 1 LYS D 517 47.60 -87.89 REMARK 500 2 ALA A 202 124.58 -172.48 REMARK 500 2 LYS A 217 -43.47 -156.21 REMARK 500 2 THR A 229 -51.40 -134.08 REMARK 500 2 ALA B 302 -149.86 79.07 REMARK 500 2 LYS B 312 19.83 -144.05 REMARK 500 2 ALA C 414 -82.25 -90.43 REMARK 500 2 SER D 506 94.78 -168.51 REMARK 500 2 THR D 529 106.90 72.82 REMARK 500 3 LYS A 217 -42.08 -143.41 REMARK 500 3 ASN A 223 78.30 -109.94 REMARK 500 3 THR A 229 -54.41 -135.63 REMARK 500 3 ALA B 302 -137.94 65.65 REMARK 500 3 LYS B 317 -32.34 -139.24 REMARK 500 3 ALA C 414 -72.71 -89.53 REMARK 500 3 THR D 529 99.17 73.02 REMARK 500 4 ALA A 214 -88.51 -65.26 REMARK 500 4 LYS A 217 -45.64 -143.54 REMARK 500 4 ALA B 302 -142.95 48.42 REMARK 500 4 LYS B 317 -39.06 -162.62 REMARK 500 4 SER C 406 67.25 -116.35 REMARK 500 4 SER D 506 95.14 -162.43 REMARK 500 4 THR D 509 64.46 -114.47 REMARK 500 4 LYS D 517 32.44 -81.48 REMARK 500 4 THR D 529 76.11 66.16 REMARK 500 5 LYS A 217 -43.13 -155.19 REMARK 500 5 THR A 218 124.78 -37.15 REMARK 500 5 THR A 229 -62.67 -127.39 REMARK 500 5 ALA B 302 -141.90 64.36 REMARK 500 5 LYS B 317 -83.00 -162.24 REMARK 500 5 THR B 318 108.70 7.43 REMARK 500 5 ALA C 414 -74.77 -97.11 REMARK 500 5 SER D 506 83.04 -155.13 REMARK 500 5 THR D 529 83.88 52.31 REMARK 500 6 LYS A 217 -43.94 -154.57 REMARK 500 6 ALA B 302 -153.65 76.95 REMARK 500 6 LYS B 317 -42.06 -171.70 REMARK 500 6 ALA C 414 -82.57 -88.39 REMARK 500 6 SER D 506 87.10 -155.77 REMARK 500 6 THR D 529 88.22 66.50 REMARK 500 7 ALA A 214 -62.15 -102.70 REMARK 500 7 LYS A 217 -36.55 -159.29 REMARK 500 7 THR A 229 -44.05 -133.58 REMARK 500 REMARK 500 THIS ENTRY HAS 77 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 225 LEU A 226 1 132.95 REMARK 500 ALA B 302 THR B 303 1 -134.28 REMARK 500 GLU B 327 SER B 328 1 139.58 REMARK 500 THR A 218 PHE A 219 2 142.84 REMARK 500 THR A 225 LEU A 226 2 141.72 REMARK 500 ALA B 302 THR B 303 2 -137.09 REMARK 500 GLU B 327 SER B 328 2 139.29 REMARK 500 GLU C 410 TYR C 411 2 -149.93 REMARK 500 THR A 225 LEU A 226 3 145.48 REMARK 500 ALA B 302 THR B 303 3 -145.90 REMARK 500 GLU B 327 SER B 328 3 143.28 REMARK 500 THR A 225 LEU A 226 4 142.26 REMARK 500 LEU A 226 GLU A 227 4 -141.67 REMARK 500 ALA B 302 THR B 303 4 -133.32 REMARK 500 GLU B 327 SER B 328 4 138.29 REMARK 500 THR D 518 PHE D 519 4 143.74 REMARK 500 THR A 225 LEU A 226 5 146.43 REMARK 500 ALA B 302 THR B 303 5 -143.86 REMARK 500 GLU B 327 SER B 328 5 149.39 REMARK 500 SER D 528 THR D 529 5 -149.40 REMARK 500 THR A 225 LEU A 226 6 137.68 REMARK 500 ALA B 302 THR B 303 6 -134.25 REMARK 500 LYS A 217 THR A 218 7 -147.39 REMARK 500 THR A 225 LEU A 226 7 138.37 REMARK 500 ALA B 302 THR B 303 7 -129.18 REMARK 500 SER A 206 GLU A 207 8 144.13 REMARK 500 THR A 225 LEU A 226 8 142.97 REMARK 500 LEU A 226 GLU A 227 8 -139.23 REMARK 500 ALA B 302 THR B 303 8 -135.21 REMARK 500 GLU B 327 SER B 328 8 134.03 REMARK 500 SER A 206 GLU A 207 9 141.81 REMARK 500 ARG A 224 THR A 225 9 149.33 REMARK 500 THR A 225 LEU A 226 9 138.66 REMARK 500 LEU A 226 GLU A 227 9 -147.26 REMARK 500 ALA B 302 THR B 303 9 -136.26 REMARK 500 GLU B 327 SER B 328 9 141.42 REMARK 500 MET D 500 GLY D 501 9 -145.86 REMARK 500 SER A 206 GLU A 207 10 142.13 REMARK 500 THR A 225 LEU A 226 10 135.97 REMARK 500 ALA B 302 THR B 303 10 -131.36 REMARK 500 GLU B 327 SER B 328 10 145.20 REMARK 500 ARG D 524 THR D 525 10 149.78 REMARK 500 THR D 525 LEU D 526 10 -146.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 TYR A 220 0.07 SIDE CHAIN REMARK 500 1 TYR B 320 0.07 SIDE CHAIN REMARK 500 1 TYR B 321 0.11 SIDE CHAIN REMARK 500 1 TYR C 420 0.11 SIDE CHAIN REMARK 500 1 TYR D 511 0.12 SIDE CHAIN REMARK 500 1 ARG D 524 0.08 SIDE CHAIN REMARK 500 2 ARG A 224 0.21 SIDE CHAIN REMARK 500 2 TYR B 311 0.07 SIDE CHAIN REMARK 500 2 TYR B 320 0.11 SIDE CHAIN REMARK 500 2 TYR C 411 0.10 SIDE CHAIN REMARK 500 2 TYR D 520 0.08 SIDE CHAIN REMARK 500 2 ARG D 524 0.07 SIDE CHAIN REMARK 500 3 ARG A 224 0.15 SIDE CHAIN REMARK 500 3 TYR B 311 0.09 SIDE CHAIN REMARK 500 3 TYR C 420 0.09 SIDE CHAIN REMARK 500 3 TYR D 511 0.10 SIDE CHAIN REMARK 500 3 TYR D 521 0.09 SIDE CHAIN REMARK 500 4 TYR A 220 0.07 SIDE CHAIN REMARK 500 4 TYR C 411 0.10 SIDE CHAIN REMARK 500 4 TYR C 421 0.07 SIDE CHAIN REMARK 500 4 ARG C 424 0.10 SIDE CHAIN REMARK 500 5 TYR A 211 0.08 SIDE CHAIN REMARK 500 5 TYR A 220 0.10 SIDE CHAIN REMARK 500 5 TYR B 320 0.09 SIDE CHAIN REMARK 500 5 TYR C 411 0.10 SIDE CHAIN REMARK 500 5 ARG C 424 0.10 SIDE CHAIN REMARK 500 5 TYR D 521 0.09 SIDE CHAIN REMARK 500 6 TYR C 411 0.08 SIDE CHAIN REMARK 500 6 TYR C 421 0.08 SIDE CHAIN REMARK 500 6 TYR D 520 0.10 SIDE CHAIN REMARK 500 7 ARG A 224 0.11 SIDE CHAIN REMARK 500 7 PHE B 319 0.08 SIDE CHAIN REMARK 500 7 TYR B 320 0.14 SIDE CHAIN REMARK 500 7 TYR C 420 0.07 SIDE CHAIN REMARK 500 7 PHE D 519 0.08 SIDE CHAIN REMARK 500 7 TYR D 520 0.14 SIDE CHAIN REMARK 500 7 TYR D 521 0.07 SIDE CHAIN REMARK 500 8 TYR C 420 0.09 SIDE CHAIN REMARK 500 9 TYR A 211 0.07 SIDE CHAIN REMARK 500 9 TYR B 320 0.10 SIDE CHAIN REMARK 500 9 TYR B 321 0.10 SIDE CHAIN REMARK 500 9 TYR C 420 0.08 SIDE CHAIN REMARK 500 9 ARG C 424 0.08 SIDE CHAIN REMARK 500 10 ARG A 224 0.09 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1 THR B 329 10.21 REMARK 500 3 THR C 429 10.51 REMARK 500 6 ALA B 302 12.68 REMARK 500 REMARK 500 REMARK: NULL DBREF 2NNT A 201 237 UNP O14776 TCRG1_HUMAN 428 464 DBREF 2NNT B 301 337 UNP O14776 TCRG1_HUMAN 428 464 DBREF 2NNT C 401 437 UNP O14776 TCRG1_HUMAN 428 464 DBREF 2NNT D 501 537 UNP O14776 TCRG1_HUMAN 428 464 SEQADV 2NNT GLY A 198 UNP O14776 CLONING ARTIFACT SEQADV 2NNT SER A 199 UNP O14776 CLONING ARTIFACT SEQADV 2NNT MET A 200 UNP O14776 CLONING ARTIFACT SEQADV 2NNT PHE A 219 UNP O14776 TYR 446 ENGINEERED MUTATION SEQADV 2NNT GLY B 298 UNP O14776 CLONING ARTIFACT SEQADV 2NNT SER B 299 UNP O14776 CLONING ARTIFACT SEQADV 2NNT MET B 300 UNP O14776 CLONING ARTIFACT SEQADV 2NNT PHE B 319 UNP O14776 TYR 446 ENGINEERED MUTATION SEQADV 2NNT GLY C 398 UNP O14776 CLONING ARTIFACT SEQADV 2NNT SER C 399 UNP O14776 CLONING ARTIFACT SEQADV 2NNT MET C 400 UNP O14776 CLONING ARTIFACT SEQADV 2NNT PHE C 419 UNP O14776 TYR 446 ENGINEERED MUTATION SEQADV 2NNT GLY D 498 UNP O14776 CLONING ARTIFACT SEQADV 2NNT SER D 499 UNP O14776 CLONING ARTIFACT SEQADV 2NNT MET D 500 UNP O14776 CLONING ARTIFACT SEQADV 2NNT PHE D 519 UNP O14776 TYR 446 ENGINEERED MUTATION SEQRES 1 A 40 GLY SER MET GLY ALA THR ALA VAL SER GLU TRP THR GLU SEQRES 2 A 40 TYR LYS THR ALA ASP GLY LYS THR PHE TYR TYR ASN ASN SEQRES 3 A 40 ARG THR LEU GLU SER THR TRP GLU LYS PRO GLN GLU LEU SEQRES 4 A 40 LYS SEQRES 1 B 40 GLY SER MET GLY ALA THR ALA VAL SER GLU TRP THR GLU SEQRES 2 B 40 TYR LYS THR ALA ASP GLY LYS THR PHE TYR TYR ASN ASN SEQRES 3 B 40 ARG THR LEU GLU SER THR TRP GLU LYS PRO GLN GLU LEU SEQRES 4 B 40 LYS SEQRES 1 C 40 GLY SER MET GLY ALA THR ALA VAL SER GLU TRP THR GLU SEQRES 2 C 40 TYR LYS THR ALA ASP GLY LYS THR PHE TYR TYR ASN ASN SEQRES 3 C 40 ARG THR LEU GLU SER THR TRP GLU LYS PRO GLN GLU LEU SEQRES 4 C 40 LYS SEQRES 1 D 40 GLY SER MET GLY ALA THR ALA VAL SER GLU TRP THR GLU SEQRES 2 D 40 TYR LYS THR ALA ASP GLY LYS THR PHE TYR TYR ASN ASN SEQRES 3 D 40 ARG THR LEU GLU SER THR TRP GLU LYS PRO GLN GLU LEU SEQRES 4 D 40 LYS SHEET 1 A 4 ALA A 202 TYR A 211 0 SHEET 2 A 4 ALA B 302 LYS B 312 1 O LYS B 312 N TYR A 211 SHEET 3 A 4 ALA C 402 ASP C 415 1 O GLU C 410 N THR B 309 SHEET 4 A 4 ALA D 502 ASP D 515 1 O ASP D 515 N ALA C 414 SHEET 1 B 4 PHE A 219 GLU A 227 0 SHEET 2 B 4 PHE B 319 GLU B 327 1 O TYR B 321 N TYR A 220 SHEET 3 B 4 PHE C 419 GLU C 427 1 O ASN C 423 N ARG B 324 SHEET 4 B 4 PHE D 519 GLU D 527 1 O ASN D 523 N ARG C 424 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1