data_2NOK # _entry.id 2NOK # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2NOK pdb_00002nok 10.2210/pdb2nok/pdb NDB AR0071 ? ? RCSB RCSB040114 ? ? WWPDB D_1000040114 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-02-13 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_comp_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_atom_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_comp_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_seq_id' 11 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 12 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_asym_id' 13 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_comp_id' 14 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 15 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 16 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_atom_id' 17 5 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_comp_id' 18 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 19 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_comp_id' 20 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 21 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 22 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_atom_id' 23 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_comp_id' 24 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_seq_id' 25 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 26 5 'Structure model' '_pdbx_struct_conn_angle.value' 27 5 'Structure model' '_struct_conn.pdbx_dist_value' 28 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 29 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 30 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 31 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 32 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 33 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 34 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 35 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 36 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 37 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 38 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 39 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 40 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 41 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 42 5 'Structure model' '_struct_conn.ptnr2_symmetry' 43 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 44 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 45 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2NOK _pdbx_database_status.recvd_initial_deposition_date 2006-10-25 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Dibrov, S.M.' 1 'Johnston-Cos, H.' 2 'Weng, Y.H.' 3 # _citation.id primary _citation.title 'Functional architecture of HCV IRES domain II stabilized by divalent metal ions in the crystal and in solution.' _citation.journal_abbrev Angew.Chem.Int.Ed.Engl. _citation.journal_volume 46 _citation.page_first 226 _citation.page_last 229 _citation.year 2007 _citation.journal_id_ASTM ACIEAY _citation.country GE _citation.journal_id_ISSN 0570-0833 _citation.journal_id_CSD 0179 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17131443 _citation.pdbx_database_id_DOI 10.1002/anie.200603807 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Dibrov, S.M.' 1 ? primary 'Johnston-Cox, H.' 2 ? primary 'Weng, Y.H.' 3 ? primary 'Hermann, T.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-R(*CP*GP*GP*AP*GP*GP*AP*AP*CP*UP*AP*CP*UP*GP*UP*CP*UP*UP*CP*AP*CP*GP*CP*C)-3'" 7644.589 2 ? ? ? ? 2 polymer syn "5'-R(*GP*CP*GP*UP*GP*UP*CP*GP*UP*GP*CP*AP*GP*CP*CP*UP*CP*CP*GP*G)-3'" 6406.831 2 ? ? ? ? 3 non-polymer syn 'MAGNESIUM ION' 24.305 8 ? ? ? ? 4 non-polymer syn 'MANGANESE (II) ION' 54.938 5 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polyribonucleotide no no CGGAGGAACUACUGUCUUCACGCC CGGAGGAACUACUGUCUUCACGCC A,C ? 2 polyribonucleotide no no GCGUGUCGUGCAGCCUCCGG GCGUGUCGUGCAGCCUCCGG B,D ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'MAGNESIUM ION' MG 4 'MANGANESE (II) ION' MN # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 C n 1 2 G n 1 3 G n 1 4 A n 1 5 G n 1 6 G n 1 7 A n 1 8 A n 1 9 C n 1 10 U n 1 11 A n 1 12 C n 1 13 U n 1 14 G n 1 15 U n 1 16 C n 1 17 U n 1 18 U n 1 19 C n 1 20 A n 1 21 C n 1 22 G n 1 23 C n 1 24 C n 2 1 G n 2 2 C n 2 3 G n 2 4 U n 2 5 G n 2 6 U n 2 7 C n 2 8 G n 2 9 U n 2 10 G n 2 11 C n 2 12 A n 2 13 G n 2 14 C n 2 15 C n 2 16 U n 2 17 C n 2 18 C n 2 19 G n 2 20 G n # loop_ _pdbx_entity_src_syn.entity_id _pdbx_entity_src_syn.pdbx_src_id _pdbx_entity_src_syn.pdbx_alt_source_flag _pdbx_entity_src_syn.pdbx_beg_seq_num _pdbx_entity_src_syn.pdbx_end_seq_num _pdbx_entity_src_syn.organism_scientific _pdbx_entity_src_syn.organism_common_name _pdbx_entity_src_syn.ncbi_taxonomy_id _pdbx_entity_src_syn.details 1 1 sample ? ? ? ? ? 'The sequence of this RNA naturally exists in Hepatitis C virus.' 2 1 sample ? ? ? ? ? 'The sequence of this RNA naturally exists in Hepatitis C virus.' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 MN non-polymer . 'MANGANESE (II) ION' ? 'Mn 2' 54.938 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 C 1 47 47 C C A . n A 1 2 G 2 48 48 G G A . n A 1 3 G 3 49 49 G G A . n A 1 4 A 4 50 50 A A A . n A 1 5 G 5 51 51 G G A . n A 1 6 G 6 52 52 G G A . n A 1 7 A 7 53 53 A A A . n A 1 8 A 8 54 54 A A A . n A 1 9 C 9 55 55 C C A . n A 1 10 U 10 56 56 U U A . n A 1 11 A 11 57 57 A A A . n A 1 12 C 12 58 58 C C A . n A 1 13 U 13 59 59 U U A . n A 1 14 G 14 60 60 G G A . n A 1 15 U 15 61 61 U U A . n A 1 16 C 16 62 62 C C A . n A 1 17 U 17 63 63 U U A . n A 1 18 U 18 64 64 U U A . n A 1 19 C 19 65 65 C C A . n A 1 20 A 20 66 66 A A A . n A 1 21 C 21 67 67 C C A . n A 1 22 G 22 68 68 G G A . n A 1 23 C 23 69 69 C C A . n A 1 24 C 24 70 70 C C A . n B 2 1 G 1 98 98 G G B . n B 2 2 C 2 99 99 C C B . n B 2 3 G 3 100 100 G G B . n B 2 4 U 4 101 101 U U B . n B 2 5 G 5 102 102 G G B . n B 2 6 U 6 103 103 U U B . n B 2 7 C 7 104 104 C C B . n B 2 8 G 8 105 105 G G B . n B 2 9 U 9 106 106 U U B . n B 2 10 G 10 107 107 G G B . n B 2 11 C 11 108 108 C C B . n B 2 12 A 12 109 109 A A B . n B 2 13 G 13 110 110 G G B . n B 2 14 C 14 111 111 C C B . n B 2 15 C 15 112 112 C C B . n B 2 16 U 16 113 113 U U B . n B 2 17 C 17 114 114 C C B . n B 2 18 C 18 115 115 C C B . n B 2 19 G 19 116 116 G G B . n B 2 20 G 20 117 117 G G B . n C 1 1 C 1 47 47 C C C . n C 1 2 G 2 48 48 G G C . n C 1 3 G 3 49 49 G G C . n C 1 4 A 4 50 50 A A C . n C 1 5 G 5 51 51 G G C . n C 1 6 G 6 52 52 G G C . n C 1 7 A 7 53 53 A A C . n C 1 8 A 8 54 54 A A C . n C 1 9 C 9 55 55 C C C . n C 1 10 U 10 56 56 U U C . n C 1 11 A 11 57 57 A A C . n C 1 12 C 12 58 58 C C C . n C 1 13 U 13 59 59 U U C . n C 1 14 G 14 60 60 G G C . n C 1 15 U 15 61 61 U U C . n C 1 16 C 16 62 62 C C C . n C 1 17 U 17 63 63 U U C . n C 1 18 U 18 64 64 U U C . n C 1 19 C 19 65 65 C C C . n C 1 20 A 20 66 66 A A C . n C 1 21 C 21 67 67 C C C . n C 1 22 G 22 68 68 G G C . n C 1 23 C 23 69 69 C C C . n C 1 24 C 24 70 70 C C C . n D 2 1 G 1 98 98 G G D . n D 2 2 C 2 99 99 C C D . n D 2 3 G 3 100 100 G G D . n D 2 4 U 4 101 101 U U D . n D 2 5 G 5 102 102 G G D . n D 2 6 U 6 103 103 U U D . n D 2 7 C 7 104 104 C C D . n D 2 8 G 8 105 105 G G D . n D 2 9 U 9 106 106 U U D . n D 2 10 G 10 107 107 G G D . n D 2 11 C 11 108 108 C C D . n D 2 12 A 12 109 109 A A D . n D 2 13 G 13 110 110 G G D . n D 2 14 C 14 111 111 C C D . n D 2 15 C 15 112 112 C C D . n D 2 16 U 16 113 113 U U D . n D 2 17 C 17 114 114 C C D . n D 2 18 C 18 115 115 C C D . n D 2 19 G 19 116 116 G G D . n D 2 20 G 20 117 117 G G D . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MG 1 127 127 MG MG A . F 4 MN 1 119 119 MN MN A . G 4 MN 1 128 128 MN MN A . H 3 MG 1 122 122 MG MG B . I 3 MG 1 124 124 MG MG B . J 3 MG 1 129 129 MG MG B . K 3 MG 1 130 130 MG MG B . L 3 MG 1 126 126 MG MG C . M 4 MN 1 118 118 MN MN C . N 4 MN 1 120 120 MN MN C . O 4 MN 1 123 123 MN MN C . P 3 MG 1 121 121 MG MG D . Q 3 MG 1 125 125 MG MG D . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 MAR345 'data collection' 345DTB ? 2 HKL-2000 'data reduction' . ? 3 HKL-2000 'data scaling' . ? 4 PHASER phasing . ? 5 # _cell.entry_id 2NOK _cell.length_a 62.098 _cell.length_b 65.351 _cell.length_c 92.400 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2NOK _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2NOK _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 3.34 _exptl_crystal.density_percent_sol 63.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 289 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;20mM MgSO4, 100mM KCl, 30mM MnCl2, 2-6% MPD over 40mM MgSO4, 200mM KCl and 40-50% MPD., pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 289K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 MgSO4 ? ? ? 1 2 1 KCl ? ? ? 1 3 1 MnCl2 ? ? ? 1 4 1 MPD ? ? ? 1 5 1 MgSO4 ? ? ? 1 6 1 H2O ? ? ? 1 7 2 MgSO4 ? ? ? 1 8 2 KCl ? ? ? 1 9 2 MnCl2 ? ? ? 1 10 2 MgSO4 ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'MAR scanner 345 mm plate' _diffrn_detector.pdbx_collection_date 2006-03-15 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54178 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.54178 # _reflns.entry_id 2NOK _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 3.00 _reflns.number_obs 7158 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 2NOK _refine.ls_number_reflns_obs 7156 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 3.00 _refine.ls_percent_reflns_obs 94.83 _refine.ls_R_factor_obs 0.25932 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.25722 _refine.ls_R_factor_R_free 0.30167 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.6 _refine.ls_number_reflns_R_free 347 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.924 _refine.correlation_coeff_Fo_to_Fc_free 0.888 _refine.B_iso_mean 79.332 _refine.aniso_B[1][1] 5.35 _refine.aniso_B[2][2] 4.21 _refine.aniso_B[3][3] -9.56 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free 0.479 _refine.overall_SU_ML 0.383 _refine.overall_SU_B 20.339 _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1856 _refine_hist.pdbx_number_atoms_ligand 13 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1869 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.021 0.021 ? 2068 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.833 3.000 ? 3216 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_chiral_restr 0.138 0.200 ? 436 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.009 0.020 ? 900 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.238 0.200 ? 915 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.298 0.200 ? 1279 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.205 0.200 ? 68 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.231 0.200 ? 36 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.347 0.200 ? 3 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? r_scbond_it 1.265 3.000 ? 2915 'X-RAY DIFFRACTION' ? r_scangle_it 2.138 4.500 ? 3216 'X-RAY DIFFRACTION' ? r_rigid_bond_restr ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_free ? ? ? ? 'X-RAY DIFFRACTION' ? r_sphericity_bonded ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 3.00 _refine_ls_shell.d_res_low 3.081 _refine_ls_shell.number_reflns_R_work 361 _refine_ls_shell.R_factor_R_work 0.315 _refine_ls_shell.percent_reflns_obs 67.02 _refine_ls_shell.R_factor_R_free 0.498 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 21 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _database_PDB_matrix.entry_id 2NOK _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2NOK _struct.title 'Crystal Structure of an RNA domain from Hepatitis C virus.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2NOK _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'Mg binding site, bent RNA, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 1 ? D N N 2 ? E N N 3 ? F N N 4 ? G N N 4 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 4 ? N N N 4 ? O N N 4 ? P N N 3 ? Q N N 3 ? # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 2NOK 2NOK ? ? ? 2 2 PDB 2NOK 2NOK ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2NOK A 1 ? 24 ? 2NOK 47 ? 70 ? 47 70 2 2 2NOK B 1 ? 20 ? 2NOK 98 ? 117 ? 98 117 3 1 2NOK C 1 ? 24 ? 2NOK 47 ? 70 ? 47 70 4 2 2NOK D 1 ? 20 ? 2NOK 98 ? 117 ? 98 117 # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_defined_assembly ? dimeric 2 2 author_defined_assembly ? dimeric 2 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,E,F,G,H,I,J,K 2 1 C,D,L,M,N,O,P,Q # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 'Biological molecule consists of chains A and B, as well as C and D.' ? 2 ? ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? A G 6 N7 ? ? ? 1_555 G MN . MN ? ? A G 52 A MN 128 1_555 ? ? ? ? ? ? ? 2.312 ? ? metalc2 metalc ? ? A C 9 O2 ? ? ? 1_555 F MN . MN ? ? A C 55 A MN 119 1_555 ? ? ? ? ? ? ? 2.308 ? ? metalc3 metalc ? ? A C 9 OP1 ? ? ? 1_555 M MN . MN ? ? A C 55 C MN 118 1_555 ? ? ? ? ? ? ? 2.217 ? ? metalc4 metalc ? ? B G 1 O6 ? ? ? 1_555 J MG . MG ? ? B G 98 B MG 129 1_555 ? ? ? ? ? ? ? 2.665 ? ? metalc5 metalc ? ? B G 1 N7 ? ? ? 1_555 J MG . MG ? ? B G 98 B MG 129 1_555 ? ? ? ? ? ? ? 2.178 ? ? metalc6 metalc ? ? B G 10 N7 ? ? ? 1_555 H MG . MG ? ? B G 107 B MG 122 1_555 ? ? ? ? ? ? ? 2.505 ? ? metalc7 metalc ? ? B G 20 O6 ? ? ? 1_555 K MG . MG ? ? B G 117 B MG 130 1_555 ? ? ? ? ? ? ? 2.949 ? ? metalc8 metalc ? ? K MG . MG ? ? ? 1_555 D G 1 O6 ? ? B MG 130 D G 98 3_444 ? ? ? ? ? ? ? 3.039 ? ? metalc9 metalc ? ? K MG . MG ? ? ? 1_555 D G 1 N7 ? ? B MG 130 D G 98 3_444 ? ? ? ? ? ? ? 2.038 ? ? metalc10 metalc ? ? C G 6 N7 ? ? ? 1_555 O MN . MN ? ? C G 52 C MN 123 1_555 ? ? ? ? ? ? ? 2.324 ? ? metalc11 metalc ? ? C C 9 OP1 ? ? ? 1_555 M MN . MN ? ? C C 55 C MN 118 1_555 ? ? ? ? ? ? ? 2.022 ? ? metalc12 metalc ? ? C C 9 O2 ? ? ? 1_555 N MN . MN ? ? C C 55 C MN 120 1_555 ? ? ? ? ? ? ? 2.172 ? ? metalc13 metalc ? ? D G 10 N7 ? ? ? 1_555 P MG . MG ? ? D G 107 D MG 121 1_555 ? ? ? ? ? ? ? 2.421 ? ? hydrog1 hydrog ? ? A C 1 N3 ? ? ? 1_555 B G 19 N1 ? ? A C 47 B G 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A C 1 N4 ? ? ? 1_555 B G 19 O6 ? ? A C 47 B G 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A C 1 O2 ? ? ? 1_555 B G 19 N2 ? ? A C 47 B G 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B C 18 N3 ? ? A G 48 B C 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B C 18 O2 ? ? A G 48 B C 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B C 18 N4 ? ? A G 48 B C 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 B C 17 N3 ? ? A G 49 B C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 B C 17 O2 ? ? A G 49 B C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 B C 17 N4 ? ? A G 49 B C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A A 4 N1 ? ? ? 1_555 B U 16 N3 ? ? A A 50 B U 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A A 4 N6 ? ? ? 1_555 B U 16 O4 ? ? A A 50 B U 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A G 5 N1 ? ? ? 1_555 B C 15 N3 ? ? A G 51 B C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N2 ? ? ? 1_555 B C 15 O2 ? ? A G 51 B C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 O6 ? ? ? 1_555 B C 15 N4 ? ? A G 51 B C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 6 N1 ? ? ? 1_555 B C 14 N3 ? ? A G 52 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A G 6 N2 ? ? ? 1_555 B C 14 O2 ? ? A G 52 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A G 6 O6 ? ? ? 1_555 B C 14 N4 ? ? A G 52 B C 111 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 12 N3 ? ? ? 1_555 B G 13 N1 ? ? A C 58 B G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 12 N4 ? ? ? 1_555 B G 13 O6 ? ? A C 58 B G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A C 12 O2 ? ? ? 1_555 B G 13 N2 ? ? A C 58 B G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A U 13 N3 ? ? ? 1_555 B A 12 N1 ? ? A U 59 B A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A U 13 O4 ? ? ? 1_555 B A 12 N6 ? ? A U 59 B A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 14 N1 ? ? ? 1_555 B C 11 N3 ? ? A G 60 B C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A G 14 N2 ? ? ? 1_555 B C 11 O2 ? ? A G 60 B C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A G 14 O6 ? ? ? 1_555 B C 11 N4 ? ? A G 60 B C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 15 N3 ? ? ? 1_555 B G 10 O6 ? ? A U 61 B G 107 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog27 hydrog ? ? A U 15 O2 ? ? ? 1_555 B G 10 N1 ? ? A U 61 B G 107 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog28 hydrog ? ? A C 16 N3 ? ? ? 1_555 B G 8 N1 ? ? A C 62 B G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 16 N4 ? ? ? 1_555 B G 8 O6 ? ? A C 62 B G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 16 O2 ? ? ? 1_555 B G 8 N2 ? ? A C 62 B G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 17 N3 ? ? ? 1_555 B C 7 N3 ? ? A U 63 B C 104 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog32 hydrog ? ? A U 17 O4 ? ? ? 1_555 B C 7 N4 ? ? A U 63 B C 104 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog33 hydrog ? ? A U 18 N3 ? ? ? 1_555 B U 6 O2 ? ? A U 64 B U 103 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog34 hydrog ? ? A U 18 O4 ? ? ? 1_555 B U 6 N3 ? ? A U 64 B U 103 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog35 hydrog ? ? A C 19 O2 ? ? ? 1_555 B G 5 N2 ? ? A C 65 B G 102 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog36 hydrog ? ? A A 20 N1 ? ? ? 1_555 B U 4 N3 ? ? A A 66 B U 101 1_555 ? ? ? ? ? ? 'A-U PAIR' ? ? ? hydrog37 hydrog ? ? A C 21 O2 ? ? ? 1_555 B G 3 N1 ? ? A C 67 B G 100 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog38 hydrog ? ? A G 22 N1 ? ? ? 1_555 B C 2 N3 ? ? A G 68 B C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog39 hydrog ? ? A G 22 N2 ? ? ? 1_555 B C 2 O2 ? ? A G 68 B C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog40 hydrog ? ? A G 22 O6 ? ? ? 1_555 B C 2 N4 ? ? A G 68 B C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A C 23 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 69 B G 98 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog42 hydrog ? ? A C 24 N3 ? ? ? 1_555 B G 1 N2 ? ? A C 70 B G 98 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog43 hydrog ? ? C C 1 N3 ? ? ? 1_555 D G 19 N1 ? ? C C 47 D G 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog44 hydrog ? ? C C 1 N4 ? ? ? 1_555 D G 19 O6 ? ? C C 47 D G 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog45 hydrog ? ? C C 1 O2 ? ? ? 1_555 D G 19 N2 ? ? C C 47 D G 116 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog46 hydrog ? ? C G 2 N1 ? ? ? 1_555 D C 18 N3 ? ? C G 48 D C 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog47 hydrog ? ? C G 2 N2 ? ? ? 1_555 D C 18 O2 ? ? C G 48 D C 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog48 hydrog ? ? C G 2 O6 ? ? ? 1_555 D C 18 N4 ? ? C G 48 D C 115 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog49 hydrog ? ? C G 3 N1 ? ? ? 1_555 D C 17 N3 ? ? C G 49 D C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? C G 3 N2 ? ? ? 1_555 D C 17 O2 ? ? C G 49 D C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? C G 3 O6 ? ? ? 1_555 D C 17 N4 ? ? C G 49 D C 114 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? C A 4 N1 ? ? ? 1_555 D U 16 N3 ? ? C A 50 D U 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? C A 4 N6 ? ? ? 1_555 D U 16 O4 ? ? C A 50 D U 113 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? C G 5 N1 ? ? ? 1_555 D C 15 N3 ? ? C G 51 D C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? C G 5 N2 ? ? ? 1_555 D C 15 O2 ? ? C G 51 D C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? C G 5 O6 ? ? ? 1_555 D C 15 N4 ? ? C G 51 D C 112 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? C G 6 N1 ? ? ? 1_555 D C 14 N3 ? ? C G 52 D C 111 1_555 ? ? ? ? ? ? 'G-C PAIR' ? ? ? hydrog58 hydrog ? ? C C 12 N3 ? ? ? 1_555 D G 13 N1 ? ? C C 58 D G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog59 hydrog ? ? C C 12 N4 ? ? ? 1_555 D G 13 O6 ? ? C C 58 D G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog60 hydrog ? ? C C 12 O2 ? ? ? 1_555 D G 13 N2 ? ? C C 58 D G 110 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? C U 13 N3 ? ? ? 1_555 D A 12 N1 ? ? C U 59 D A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? C U 13 O4 ? ? ? 1_555 D A 12 N6 ? ? C U 59 D A 109 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? C G 14 N1 ? ? ? 1_555 D C 11 N3 ? ? C G 60 D C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? C G 14 N2 ? ? ? 1_555 D C 11 O2 ? ? C G 60 D C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? C G 14 O6 ? ? ? 1_555 D C 11 N4 ? ? C G 60 D C 108 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? C U 15 N3 ? ? ? 1_555 D G 10 O6 ? ? C U 61 D G 107 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog67 hydrog ? ? C U 15 O2 ? ? ? 1_555 D G 10 N1 ? ? C U 61 D G 107 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog68 hydrog ? ? C C 16 N3 ? ? ? 1_555 D G 8 N1 ? ? C C 62 D G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog69 hydrog ? ? C C 16 N4 ? ? ? 1_555 D G 8 O6 ? ? C C 62 D G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog70 hydrog ? ? C C 16 O2 ? ? ? 1_555 D G 8 N2 ? ? C C 62 D G 105 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? C U 17 O4 ? ? ? 1_555 D C 7 N4 ? ? C U 63 D C 104 1_555 ? ? ? ? ? ? 'U-C MISPAIR' ? ? ? hydrog72 hydrog ? ? C U 18 N3 ? ? ? 1_555 D U 6 O2 ? ? C U 64 D U 103 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog73 hydrog ? ? C U 18 O4 ? ? ? 1_555 D U 6 N3 ? ? C U 64 D U 103 1_555 ? ? ? ? ? ? TYPE_16_PAIR ? ? ? hydrog74 hydrog ? ? C C 19 O2 ? ? ? 1_555 D G 5 N2 ? ? C C 65 D G 102 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog75 hydrog ? ? C A 20 N1 ? ? ? 1_555 D U 4 N3 ? ? C A 66 D U 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? C A 20 N6 ? ? ? 1_555 D U 4 O4 ? ? C A 66 D U 101 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog77 hydrog ? ? C C 21 N4 ? ? ? 1_555 D G 3 O6 ? ? C C 67 D G 100 1_555 ? ? ? ? ? ? 'C-G PAIR' ? ? ? hydrog78 hydrog ? ? C G 22 N1 ? ? ? 1_555 D C 2 N3 ? ? C G 68 D C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog79 hydrog ? ? C G 22 N2 ? ? ? 1_555 D C 2 O2 ? ? C G 68 D C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog80 hydrog ? ? C G 22 O6 ? ? ? 1_555 D C 2 N4 ? ? C G 68 D C 99 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog81 hydrog ? ? C C 23 N3 ? ? ? 1_555 D G 1 N1 ? ? C C 69 D G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog82 hydrog ? ? C C 23 N4 ? ? ? 1_555 D G 1 O6 ? ? C C 69 D G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog83 hydrog ? ? C C 23 O2 ? ? ? 1_555 D G 1 N2 ? ? C C 69 D G 98 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A C 9 ? A C 55 ? 1_555 MN ? M MN . ? C MN 118 ? 1_555 OP1 ? C C 9 ? C C 55 ? 1_555 82.5 ? 2 O6 ? B G 1 ? B G 98 ? 1_555 MG ? J MG . ? B MG 129 ? 1_555 N7 ? B G 1 ? B G 98 ? 1_555 74.5 ? 3 O6 ? B G 20 ? B G 117 ? 1_555 MG ? K MG . ? B MG 130 ? 1_555 O6 ? D G 1 ? D G 98 ? 3_444 73.1 ? 4 O6 ? B G 20 ? B G 117 ? 1_555 MG ? K MG . ? B MG 130 ? 1_555 N7 ? D G 1 ? D G 98 ? 3_444 77.9 ? 5 O6 ? D G 1 ? D G 98 ? 3_444 MG ? K MG . ? B MG 130 ? 1_555 N7 ? D G 1 ? D G 98 ? 3_444 68.9 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software D MG 121 ? 1 'BINDING SITE FOR RESIDUE MG D 121' AC2 Software B MG 122 ? 2 'BINDING SITE FOR RESIDUE MG B 122' AC3 Software B MG 124 ? 1 'BINDING SITE FOR RESIDUE MG B 124' AC4 Software D MG 125 ? 1 'BINDING SITE FOR RESIDUE MG D 125' AC5 Software B MG 129 ? 2 'BINDING SITE FOR RESIDUE MG B 129' AC6 Software B MG 130 ? 2 'BINDING SITE FOR RESIDUE MG B 130' AC7 Software C MN 118 ? 2 'BINDING SITE FOR RESIDUE MN C 118' AC8 Software A MN 119 ? 1 'BINDING SITE FOR RESIDUE MN A 119' AC9 Software C MN 120 ? 1 'BINDING SITE FOR RESIDUE MN C 120' BC1 Software C MN 123 ? 1 'BINDING SITE FOR RESIDUE MN C 123' BC2 Software A MN 128 ? 1 'BINDING SITE FOR RESIDUE MN A 128' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 1 G D 10 ? G D 107 . ? 1_555 ? 2 AC2 2 G B 8 ? G B 105 . ? 1_555 ? 3 AC2 2 G B 10 ? G B 107 . ? 1_555 ? 4 AC3 1 C B 14 ? C B 111 . ? 1_555 ? 5 AC4 1 A A 11 ? A A 57 . ? 1_555 ? 6 AC5 2 G B 1 ? G B 98 . ? 1_555 ? 7 AC5 2 G D 20 ? G D 117 . ? 4_555 ? 8 AC6 2 G B 20 ? G B 117 . ? 1_555 ? 9 AC6 2 G D 1 ? G D 98 . ? 3_444 ? 10 AC7 2 C A 9 ? C A 55 . ? 1_555 ? 11 AC7 2 C C 9 ? C C 55 . ? 1_555 ? 12 AC8 1 C A 9 ? C A 55 . ? 1_555 ? 13 AC9 1 C C 9 ? C C 55 . ? 1_555 ? 14 BC1 1 G C 6 ? G C 52 . ? 1_555 ? 15 BC2 1 G A 6 ? G A 52 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O4'" A A 50 ? ? "C4'" A A 50 ? ? 1.524 1.454 0.070 0.010 N 2 1 N3 A A 50 ? ? C4 A A 50 ? ? 1.383 1.344 0.039 0.006 N 3 1 "C5'" A G 51 ? ? "C4'" A G 51 ? ? 1.607 1.509 0.098 0.012 N 4 1 "O4'" A G 51 ? ? "C1'" A G 51 ? ? 1.502 1.415 0.087 0.012 N 5 1 "O3'" A G 51 ? ? "C3'" A G 51 ? ? 1.509 1.427 0.082 0.012 N 6 1 "C2'" A G 51 ? ? "O2'" A G 51 ? ? 1.492 1.420 0.072 0.010 N 7 1 C4 A U 59 ? ? O4 A U 59 ? ? 1.156 1.232 -0.076 0.008 N 8 1 N3 A U 59 ? ? C4 A U 59 ? ? 1.444 1.380 0.064 0.009 N 9 1 C4 A U 59 ? ? C5 A U 59 ? ? 1.537 1.431 0.106 0.009 N 10 1 "O3'" A U 59 ? ? P A G 60 ? ? 1.705 1.607 0.098 0.012 Y 11 1 P B A 109 ? ? "O5'" B A 109 ? ? 1.531 1.593 -0.062 0.010 N 12 1 "C5'" B A 109 ? ? "C4'" B A 109 ? ? 1.652 1.509 0.143 0.012 N 13 1 "C4'" B A 109 ? ? "C3'" B A 109 ? ? 1.378 1.521 -0.143 0.010 N 14 1 "O4'" B A 109 ? ? "C4'" B A 109 ? ? 1.719 1.454 0.265 0.010 N 15 1 C4 B A 109 ? ? C5 B A 109 ? ? 1.319 1.383 -0.064 0.007 N 16 1 C6 B A 109 ? ? N1 B A 109 ? ? 1.455 1.351 0.104 0.007 N 17 1 C5 B A 109 ? ? N7 B A 109 ? ? 1.466 1.388 0.078 0.006 N 18 1 C8 B A 109 ? ? N9 B A 109 ? ? 1.423 1.373 0.050 0.008 N 19 1 C6 B A 109 ? ? N6 B A 109 ? ? 1.285 1.335 -0.050 0.008 N 20 1 "O3'" B G 110 ? ? "C3'" B G 110 ? ? 1.514 1.427 0.087 0.012 N 21 1 N1 B G 110 ? ? C2 B G 110 ? ? 1.283 1.373 -0.090 0.008 N 22 1 N9 B G 110 ? ? C4 B G 110 ? ? 1.457 1.375 0.082 0.008 N 23 1 "C5'" B C 112 ? ? "C4'" B C 112 ? ? 1.726 1.509 0.217 0.012 N 24 1 "C4'" B C 112 ? ? "C3'" B C 112 ? ? 1.647 1.527 0.120 0.011 N 25 1 "C3'" B C 112 ? ? "C2'" B C 112 ? ? 1.601 1.525 0.076 0.011 N 26 1 "C2'" B C 112 ? ? "C1'" B C 112 ? ? 1.596 1.529 0.067 0.011 N 27 1 "O3'" B C 112 ? ? "C3'" B C 112 ? ? 1.554 1.427 0.127 0.012 N 28 1 N1 B C 112 ? ? C6 B C 112 ? ? 1.315 1.367 -0.052 0.006 N 29 1 N3 B C 112 ? ? C4 B C 112 ? ? 1.260 1.335 -0.075 0.007 N 30 1 C2 B U 113 ? ? O2 B U 113 ? ? 1.306 1.219 0.087 0.009 N 31 1 C2 B U 113 ? ? N3 B U 113 ? ? 1.417 1.373 0.044 0.007 N 32 1 "O4'" D A 109 ? ? "C4'" D A 109 ? ? 1.585 1.454 0.131 0.010 N 33 1 C5 D A 109 ? ? N7 D A 109 ? ? 1.492 1.388 0.104 0.006 N 34 1 N7 D A 109 ? ? C8 D A 109 ? ? 1.356 1.311 0.045 0.007 N 35 1 C2 D G 110 ? ? N3 D G 110 ? ? 1.388 1.323 0.065 0.008 N 36 1 C5 D G 110 ? ? N7 D G 110 ? ? 1.344 1.388 -0.044 0.006 N 37 1 "C1'" D C 114 ? ? N1 D C 114 ? ? 1.597 1.483 0.114 0.015 N 38 1 C2 D C 114 ? ? O2 D C 114 ? ? 1.328 1.240 0.088 0.009 N 39 1 N1 D C 114 ? ? C6 D C 114 ? ? 1.407 1.367 0.040 0.006 N 40 1 N3 D C 114 ? ? C4 D C 114 ? ? 1.385 1.335 0.050 0.007 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A G 48 ? ? "O3'" A G 48 ? ? P A G 49 ? ? 110.22 119.70 -9.48 1.20 Y 2 1 "C4'" A A 50 ? ? "C3'" A A 50 ? ? "C2'" A A 50 ? ? 95.26 102.60 -7.34 1.00 N 3 1 N9 A A 50 ? ? "C1'" A A 50 ? ? "C2'" A A 50 ? ? 125.23 114.00 11.23 1.30 N 4 1 C2 A A 50 ? ? N3 A A 50 ? ? C4 A A 50 ? ? 105.64 110.60 -4.96 0.50 N 5 1 C5 A A 50 ? ? C6 A A 50 ? ? N1 A A 50 ? ? 114.06 117.70 -3.64 0.50 N 6 1 C4 A A 50 ? ? C5 A A 50 ? ? N7 A A 50 ? ? 107.45 110.70 -3.25 0.50 N 7 1 C5 A A 50 ? ? N7 A A 50 ? ? C8 A A 50 ? ? 107.14 103.90 3.24 0.50 N 8 1 "C5'" A G 51 ? ? "C4'" A G 51 ? ? "O4'" A G 51 ? ? 118.94 109.80 9.14 0.90 N 9 1 "C1'" A G 51 ? ? "O4'" A G 51 ? ? "C4'" A G 51 ? ? 105.41 109.70 -4.29 0.70 N 10 1 C2 A G 51 ? ? N3 A G 51 ? ? C4 A G 51 ? ? 116.53 111.90 4.63 0.50 N 11 1 C5 A G 51 ? ? N7 A G 51 ? ? C8 A G 51 ? ? 108.40 104.30 4.10 0.50 N 12 1 N7 A G 51 ? ? C8 A G 51 ? ? N9 A G 51 ? ? 109.05 113.10 -4.05 0.50 N 13 1 C8 A G 51 ? ? N9 A G 51 ? ? C4 A G 51 ? ? 109.43 106.40 3.03 0.40 N 14 1 N3 A G 51 ? ? C4 A G 51 ? ? N9 A G 51 ? ? 131.18 126.00 5.18 0.60 N 15 1 N1 A G 51 ? ? C6 A G 51 ? ? O6 A G 51 ? ? 125.11 119.90 5.21 0.60 N 16 1 C5 A G 51 ? ? C6 A G 51 ? ? O6 A G 51 ? ? 123.07 128.60 -5.53 0.60 N 17 1 C5 A G 52 ? ? C6 A G 52 ? ? O6 A G 52 ? ? 123.10 128.60 -5.50 0.60 N 18 1 "O4'" A A 54 ? ? "C1'" A A 54 ? ? N9 A A 54 ? ? 113.04 108.50 4.54 0.70 N 19 1 "O4'" A U 56 ? ? "C1'" A U 56 ? ? N1 A U 56 ? ? 114.01 108.50 5.51 0.70 N 20 1 C8 A A 57 ? ? N9 A A 57 ? ? C4 A A 57 ? ? 103.16 105.80 -2.64 0.40 N 21 1 "O5'" A C 58 ? ? "C5'" A C 58 ? ? "C4'" A C 58 ? ? 103.36 109.40 -6.04 0.80 N 22 1 "C4'" A C 58 ? ? "C3'" A C 58 ? ? "C2'" A C 58 ? ? 94.57 102.60 -8.03 1.00 N 23 1 N1 A C 58 ? ? C2 A C 58 ? ? N3 A C 58 ? ? 123.42 119.20 4.22 0.70 N 24 1 C2 A C 58 ? ? N3 A C 58 ? ? C4 A C 58 ? ? 113.31 119.90 -6.59 0.50 N 25 1 N3 A C 58 ? ? C4 A C 58 ? ? C5 A C 58 ? ? 124.35 121.90 2.45 0.40 N 26 1 C4 A C 58 ? ? C5 A C 58 ? ? C6 A C 58 ? ? 121.51 117.40 4.11 0.50 N 27 1 C5 A C 58 ? ? C6 A C 58 ? ? N1 A C 58 ? ? 115.57 121.00 -5.43 0.50 N 28 1 N1 A C 58 ? ? C2 A C 58 ? ? O2 A C 58 ? ? 114.40 118.90 -4.50 0.60 N 29 1 N3 A C 58 ? ? C4 A C 58 ? ? N4 A C 58 ? ? 109.79 118.00 -8.21 0.70 N 30 1 C5 A C 58 ? ? C4 A C 58 ? ? N4 A C 58 ? ? 125.86 120.20 5.66 0.70 N 31 1 "O5'" A U 59 ? ? "C5'" A U 59 ? ? "C4'" A U 59 ? ? 104.24 109.40 -5.16 0.80 N 32 1 "O4'" A U 59 ? ? "C4'" A U 59 ? ? "C3'" A U 59 ? ? 92.81 104.00 -11.19 1.00 N 33 1 "C5'" A U 59 ? ? "C4'" A U 59 ? ? "O4'" A U 59 ? ? 116.48 109.80 6.68 0.90 N 34 1 "C1'" A U 59 ? ? "O4'" A U 59 ? ? "C4'" A U 59 ? ? 104.45 109.70 -5.25 0.70 N 35 1 N1 A U 59 ? ? "C1'" A U 59 ? ? "C2'" A U 59 ? ? 122.72 114.00 8.72 1.30 N 36 1 N1 A U 59 ? ? C2 A U 59 ? ? N3 A U 59 ? ? 127.79 114.90 12.89 0.60 N 37 1 C2 A U 59 ? ? N3 A U 59 ? ? C4 A U 59 ? ? 113.05 127.00 -13.95 0.60 N 38 1 N3 A U 59 ? ? C4 A U 59 ? ? C5 A U 59 ? ? 122.84 114.60 8.24 0.60 N 39 1 C4 A U 59 ? ? C5 A U 59 ? ? C6 A U 59 ? ? 113.36 119.70 -6.34 0.60 N 40 1 N1 A U 59 ? ? C2 A U 59 ? ? O2 A U 59 ? ? 115.68 122.80 -7.12 0.70 N 41 1 N3 A U 59 ? ? C2 A U 59 ? ? O2 A U 59 ? ? 116.42 122.20 -5.78 0.70 N 42 1 N3 A U 59 ? ? C4 A U 59 ? ? O4 A U 59 ? ? 110.91 119.40 -8.49 0.70 N 43 1 "O4'" A U 61 ? ? "C4'" A U 61 ? ? "C3'" A U 61 ? ? 97.73 104.00 -6.27 1.00 N 44 1 "C4'" A C 62 ? ? "C3'" A C 62 ? ? "C2'" A C 62 ? ? 96.49 102.60 -6.11 1.00 N 45 1 "O4'" A U 63 ? ? "C1'" A U 63 ? ? N1 A U 63 ? ? 112.95 108.50 4.45 0.70 N 46 1 "O4'" A U 64 ? ? "C1'" A U 64 ? ? N1 A U 64 ? ? 114.02 108.50 5.52 0.70 N 47 1 "O4'" A C 65 ? ? "C1'" A C 65 ? ? N1 A C 65 ? ? 113.84 108.50 5.34 0.70 N 48 1 "O4'" A G 68 ? ? "C1'" A G 68 ? ? N9 A G 68 ? ? 112.77 108.50 4.27 0.70 N 49 1 "O5'" A C 69 ? ? "C5'" A C 69 ? ? "C4'" A C 69 ? ? 104.59 109.40 -4.81 0.80 N 50 1 "O4'" A C 70 ? ? "C1'" A C 70 ? ? N1 A C 70 ? ? 112.90 108.50 4.40 0.70 N 51 1 N9 B G 100 ? ? "C1'" B G 100 ? ? "C2'" B G 100 ? ? 103.28 112.00 -8.72 1.10 N 52 1 "O4'" B G 100 ? ? "C1'" B G 100 ? ? N9 B G 100 ? ? 113.87 108.50 5.37 0.70 N 53 1 "O4'" B U 101 ? ? "C1'" B U 101 ? ? N1 B U 101 ? ? 112.90 108.50 4.40 0.70 N 54 1 N9 B G 102 ? ? "C1'" B G 102 ? ? "C2'" B G 102 ? ? 105.37 112.00 -6.63 1.10 N 55 1 "O4'" B G 102 ? ? "C1'" B G 102 ? ? N9 B G 102 ? ? 113.03 108.50 4.53 0.70 N 56 1 "O4'" B U 103 ? ? "C1'" B U 103 ? ? N1 B U 103 ? ? 114.75 108.50 6.25 0.70 N 57 1 "C3'" B U 106 ? ? "C2'" B U 106 ? ? "C1'" B U 106 ? ? 93.78 101.30 -7.52 0.70 N 58 1 N1 B U 106 ? ? "C1'" B U 106 ? ? "C2'" B U 106 ? ? 122.85 114.00 8.85 1.30 N 59 1 "O4'" B U 106 ? ? "C1'" B U 106 ? ? N1 B U 106 ? ? 113.90 108.50 5.40 0.70 N 60 1 "C3'" B U 106 ? ? "O3'" B U 106 ? ? P B G 107 ? ? 128.94 119.70 9.24 1.20 Y 61 1 C6 B C 108 ? ? N1 B C 108 ? ? C2 B C 108 ? ? 117.44 120.30 -2.86 0.40 N 62 1 "C3'" B A 109 ? ? "C2'" B A 109 ? ? "C1'" B A 109 ? ? 110.59 101.50 9.09 0.80 N 63 1 N9 B A 109 ? ? "C1'" B A 109 ? ? "C2'" B A 109 ? ? 104.53 112.00 -7.47 1.10 N 64 1 C6 B A 109 ? ? N1 B A 109 ? ? C2 B A 109 ? ? 113.65 118.60 -4.95 0.60 N 65 1 N1 B A 109 ? ? C2 B A 109 ? ? N3 B A 109 ? ? 124.30 129.30 -5.00 0.50 N 66 1 C2 B A 109 ? ? N3 B A 109 ? ? C4 B A 109 ? ? 116.46 110.60 5.86 0.50 N 67 1 C4 B A 109 ? ? C5 B A 109 ? ? C6 B A 109 ? ? 111.55 117.00 -5.45 0.50 N 68 1 C5 B A 109 ? ? C6 B A 109 ? ? N1 B A 109 ? ? 126.09 117.70 8.39 0.50 N 69 1 C4 B A 109 ? ? C5 B A 109 ? ? N7 B A 109 ? ? 113.97 110.70 3.27 0.50 N 70 1 N7 B A 109 ? ? C8 B A 109 ? ? N9 B A 109 ? ? 108.93 113.80 -4.87 0.50 N 71 1 C8 B A 109 ? ? N9 B A 109 ? ? C4 B A 109 ? ? 110.27 105.80 4.47 0.40 N 72 1 N9 B A 109 ? ? C4 B A 109 ? ? C5 B A 109 ? ? 103.12 105.80 -2.68 0.40 N 73 1 C5 B A 109 ? ? C6 B A 109 ? ? N6 B A 109 ? ? 113.48 123.70 -10.22 0.80 N 74 1 N1 B G 110 ? ? C2 B G 110 ? ? N3 B G 110 ? ? 128.61 123.90 4.71 0.60 N 75 1 N3 B G 110 ? ? C4 B G 110 ? ? C5 B G 110 ? ? 122.04 128.60 -6.56 0.50 N 76 1 C4 B G 110 ? ? C5 B G 110 ? ? C6 B G 110 ? ? 124.00 118.80 5.20 0.60 N 77 1 N3 B G 110 ? ? C4 B G 110 ? ? N9 B G 110 ? ? 131.11 126.00 5.11 0.60 N 78 1 C6 B G 110 ? ? C5 B G 110 ? ? N7 B G 110 ? ? 126.67 130.40 -3.73 0.60 N 79 1 N1 B G 110 ? ? C2 B G 110 ? ? N2 B G 110 ? ? 102.33 116.20 -13.87 0.90 N 80 1 N3 B G 110 ? ? C2 B G 110 ? ? N2 B G 110 ? ? 129.06 119.90 9.16 0.70 N 81 1 OP1 B C 111 ? ? P B C 111 ? ? OP2 B C 111 ? ? 130.83 119.60 11.23 1.50 N 82 1 N1 B C 111 ? ? C2 B C 111 ? ? O2 B C 111 ? ? 123.60 118.90 4.70 0.60 N 83 1 N3 B C 111 ? ? C2 B C 111 ? ? O2 B C 111 ? ? 114.27 121.90 -7.63 0.70 N 84 1 "O5'" B C 112 ? ? "C5'" B C 112 ? ? "C4'" B C 112 ? ? 96.61 109.40 -12.79 0.80 N 85 1 P B C 112 ? ? "O5'" B C 112 ? ? "C5'" B C 112 ? ? 107.83 120.90 -13.07 1.60 N 86 1 "C5'" B C 112 ? ? "C4'" B C 112 ? ? "O4'" B C 112 ? ? 119.74 109.80 9.94 0.90 N 87 1 "C4'" B C 112 ? ? "C3'" B C 112 ? ? "C2'" B C 112 ? ? 94.78 102.60 -7.82 1.00 N 88 1 "O4'" B C 112 ? ? "C1'" B C 112 ? ? N1 B C 112 ? ? 114.98 108.50 6.48 0.70 N 89 1 C6 B C 112 ? ? N1 B C 112 ? ? C2 B C 112 ? ? 116.59 120.30 -3.71 0.40 N 90 1 N1 B C 112 ? ? C2 B C 112 ? ? N3 B C 112 ? ? 127.42 119.20 8.22 0.70 N 91 1 C2 B C 112 ? ? N3 B C 112 ? ? C4 B C 112 ? ? 115.09 119.90 -4.81 0.50 N 92 1 C4 B C 112 ? ? C5 B C 112 ? ? C6 B C 112 ? ? 122.33 117.40 4.93 0.50 N 93 1 C5 B C 112 ? ? C6 B C 112 ? ? N1 B C 112 ? ? 117.51 121.00 -3.49 0.50 N 94 1 N3 B C 112 ? ? C2 B C 112 ? ? O2 B C 112 ? ? 114.49 121.90 -7.41 0.70 N 95 1 P B U 113 ? ? "O5'" B U 113 ? ? "C5'" B U 113 ? ? 105.87 120.90 -15.03 1.60 N 96 1 N1 B U 113 ? ? C2 B U 113 ? ? O2 B U 113 ? ? 127.61 122.80 4.81 0.70 N 97 1 N3 B C 114 ? ? C2 B C 114 ? ? O2 B C 114 ? ? 117.59 121.90 -4.31 0.70 N 98 1 P B C 115 ? ? "O5'" B C 115 ? ? "C5'" B C 115 ? ? 111.05 120.90 -9.85 1.60 N 99 1 P B G 116 ? ? "O5'" B G 116 ? ? "C5'" B G 116 ? ? 111.27 120.90 -9.63 1.60 N 100 1 "C4'" B G 116 ? ? "C3'" B G 116 ? ? "C2'" B G 116 ? ? 95.17 102.60 -7.43 1.00 N 101 1 "C3'" B G 116 ? ? "C2'" B G 116 ? ? "C1'" B G 116 ? ? 96.05 101.30 -5.25 0.70 N 102 1 N3 C G 48 ? ? C4 C G 48 ? ? C5 C G 48 ? ? 125.51 128.60 -3.09 0.50 N 103 1 P C G 51 ? ? "O5'" C G 51 ? ? "C5'" C G 51 ? ? 109.79 120.90 -11.11 1.60 N 104 1 N9 C G 51 ? ? "C1'" C G 51 ? ? "C2'" C G 51 ? ? 105.21 112.00 -6.79 1.10 N 105 1 C8 C G 51 ? ? N9 C G 51 ? ? C4 C G 51 ? ? 103.14 106.40 -3.26 0.40 N 106 1 N9 C G 52 ? ? "C1'" C G 52 ? ? "C2'" C G 52 ? ? 104.05 112.00 -7.95 1.10 N 107 1 "C3'" C G 52 ? ? "O3'" C G 52 ? ? P C A 53 ? ? 127.11 119.70 7.41 1.20 Y 108 1 "C3'" C C 58 ? ? "O3'" C C 58 ? ? P C U 59 ? ? 111.27 119.70 -8.43 1.20 Y 109 1 "O4'" C U 59 ? ? "C4'" C U 59 ? ? "C3'" C U 59 ? ? 97.55 104.00 -6.45 1.00 N 110 1 "O4'" C U 59 ? ? "C1'" C U 59 ? ? N1 C U 59 ? ? 115.53 108.50 7.03 0.70 N 111 1 "O4'" C C 65 ? ? "C1'" C C 65 ? ? N1 C C 65 ? ? 112.93 108.50 4.43 0.70 N 112 1 "O4'" C A 66 ? ? "C1'" C A 66 ? ? N9 C A 66 ? ? 114.50 108.50 6.00 0.70 N 113 1 "O4'" C C 67 ? ? "C1'" C C 67 ? ? N1 C C 67 ? ? 113.14 108.50 4.64 0.70 N 114 1 "O4'" C C 69 ? ? "C1'" C C 69 ? ? N1 C C 69 ? ? 113.90 108.50 5.40 0.70 N 115 1 "O4'" D U 101 ? ? "C1'" D U 101 ? ? N1 D U 101 ? ? 113.15 108.50 4.65 0.70 N 116 1 "O4'" D C 104 ? ? "C1'" D C 104 ? ? N1 D C 104 ? ? 113.35 108.50 4.85 0.70 N 117 1 "C3'" D G 105 ? ? "O3'" D G 105 ? ? P D U 106 ? ? 129.39 119.70 9.69 1.20 Y 118 1 "C1'" D U 106 ? ? "O4'" D U 106 ? ? "C4'" D U 106 ? ? 104.44 109.70 -5.26 0.70 N 119 1 "C3'" D U 106 ? ? "C2'" D U 106 ? ? "C1'" D U 106 ? ? 93.01 101.30 -8.29 0.70 N 120 1 N1 D U 106 ? ? "C1'" D U 106 ? ? "C2'" D U 106 ? ? 125.10 114.00 11.10 1.30 N 121 1 C2 D U 106 ? ? N1 D U 106 ? ? "C1'" D U 106 ? ? 125.05 117.70 7.35 1.20 N 122 1 P D A 109 ? ? "O5'" D A 109 ? ? "C5'" D A 109 ? ? 110.83 120.90 -10.07 1.60 N 123 1 "C3'" D A 109 ? ? "C2'" D A 109 ? ? "C1'" D A 109 ? ? 107.43 101.50 5.93 0.80 N 124 1 N9 D A 109 ? ? "C1'" D A 109 ? ? "C2'" D A 109 ? ? 105.21 112.00 -6.79 1.10 N 125 1 C4 D A 109 ? ? C5 D A 109 ? ? N7 D A 109 ? ? 107.07 110.70 -3.63 0.50 N 126 1 N7 D A 109 ? ? C8 D A 109 ? ? N9 D A 109 ? ? 110.64 113.80 -3.16 0.50 N 127 1 N9 D A 109 ? ? C4 D A 109 ? ? C5 D A 109 ? ? 109.73 105.80 3.93 0.40 N 128 1 "C3'" D A 109 ? ? "O3'" D A 109 ? ? P D G 110 ? ? 109.44 119.70 -10.26 1.20 Y 129 1 P D G 110 ? ? "O5'" D G 110 ? ? "C5'" D G 110 ? ? 110.76 120.90 -10.14 1.60 N 130 1 N9 D G 110 ? ? "C1'" D G 110 ? ? "C2'" D G 110 ? ? 104.66 112.00 -7.34 1.10 N 131 1 "O4'" D G 110 ? ? "C1'" D G 110 ? ? N9 D G 110 ? ? 115.82 108.50 7.32 0.70 N 132 1 C6 D G 110 ? ? N1 D G 110 ? ? C2 D G 110 ? ? 120.66 125.10 -4.44 0.60 N 133 1 C2 D G 110 ? ? N3 D G 110 ? ? C4 D G 110 ? ? 115.49 111.90 3.59 0.50 N 134 1 N3 D G 110 ? ? C4 D G 110 ? ? C5 D G 110 ? ? 123.84 128.60 -4.76 0.50 N 135 1 C5 D G 110 ? ? C6 D G 110 ? ? N1 D G 110 ? ? 115.53 111.50 4.03 0.50 N 136 1 C8 D G 110 ? ? N9 D G 110 ? ? C4 D G 110 ? ? 101.01 106.40 -5.39 0.40 N 137 1 N9 D G 110 ? ? C4 D G 110 ? ? C5 D G 110 ? ? 109.00 105.40 3.60 0.40 N 138 1 "O4'" D C 112 ? ? "C4'" D C 112 ? ? "C3'" D C 112 ? ? 96.01 104.00 -7.99 1.00 N 139 1 C6 D C 112 ? ? N1 D C 112 ? ? C2 D C 112 ? ? 122.78 120.30 2.48 0.40 N 140 1 N1 D U 113 ? ? C2 D U 113 ? ? O2 D U 113 ? ? 129.77 122.80 6.97 0.70 N 141 1 N3 D U 113 ? ? C2 D U 113 ? ? O2 D U 113 ? ? 116.92 122.20 -5.28 0.70 N 142 1 "C3'" D U 113 ? ? "O3'" D U 113 ? ? P D C 114 ? ? 111.95 119.70 -7.75 1.20 Y 143 1 N3 D C 114 ? ? C4 D C 114 ? ? C5 D C 114 ? ? 124.62 121.90 2.72 0.40 N 144 1 P D C 115 ? ? "O5'" D C 115 ? ? "C5'" D C 115 ? ? 109.65 120.90 -11.25 1.60 N 145 1 "O4'" D C 115 ? ? "C1'" D C 115 ? ? N1 D C 115 ? ? 113.74 108.50 5.24 0.70 N 146 1 N3 D C 115 ? ? C4 D C 115 ? ? C5 D C 115 ? ? 125.21 121.90 3.31 0.40 N 147 1 N1 D C 115 ? ? C2 D C 115 ? ? O2 D C 115 ? ? 123.53 118.90 4.63 0.60 N 148 1 N3 D C 115 ? ? C2 D C 115 ? ? O2 D C 115 ? ? 115.60 121.90 -6.30 0.70 N 149 1 N3 D C 115 ? ? C4 D C 115 ? ? N4 D C 115 ? ? 113.75 118.00 -4.25 0.70 N 150 1 N1 D G 116 ? ? C6 D G 116 ? ? O6 D G 116 ? ? 114.44 119.90 -5.46 0.60 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 G OP3 O N N 73 G P P N N 74 G OP1 O N N 75 G OP2 O N N 76 G "O5'" O N N 77 G "C5'" C N N 78 G "C4'" C N R 79 G "O4'" O N N 80 G "C3'" C N S 81 G "O3'" O N N 82 G "C2'" C N R 83 G "O2'" O N N 84 G "C1'" C N R 85 G N9 N Y N 86 G C8 C Y N 87 G N7 N Y N 88 G C5 C Y N 89 G C6 C N N 90 G O6 O N N 91 G N1 N N N 92 G C2 C N N 93 G N2 N N N 94 G N3 N N N 95 G C4 C Y N 96 G HOP3 H N N 97 G HOP2 H N N 98 G "H5'" H N N 99 G "H5''" H N N 100 G "H4'" H N N 101 G "H3'" H N N 102 G "HO3'" H N N 103 G "H2'" H N N 104 G "HO2'" H N N 105 G "H1'" H N N 106 G H8 H N N 107 G H1 H N N 108 G H21 H N N 109 G H22 H N N 110 MG MG MG N N 111 MN MN MN N N 112 U OP3 O N N 113 U P P N N 114 U OP1 O N N 115 U OP2 O N N 116 U "O5'" O N N 117 U "C5'" C N N 118 U "C4'" C N R 119 U "O4'" O N N 120 U "C3'" C N S 121 U "O3'" O N N 122 U "C2'" C N R 123 U "O2'" O N N 124 U "C1'" C N R 125 U N1 N N N 126 U C2 C N N 127 U O2 O N N 128 U N3 N N N 129 U C4 C N N 130 U O4 O N N 131 U C5 C N N 132 U C6 C N N 133 U HOP3 H N N 134 U HOP2 H N N 135 U "H5'" H N N 136 U "H5''" H N N 137 U "H4'" H N N 138 U "H3'" H N N 139 U "HO3'" H N N 140 U "H2'" H N N 141 U "HO2'" H N N 142 U "H1'" H N N 143 U H3 H N N 144 U H5 H N N 145 U H6 H N N 146 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 G OP3 P sing N N 76 G OP3 HOP3 sing N N 77 G P OP1 doub N N 78 G P OP2 sing N N 79 G P "O5'" sing N N 80 G OP2 HOP2 sing N N 81 G "O5'" "C5'" sing N N 82 G "C5'" "C4'" sing N N 83 G "C5'" "H5'" sing N N 84 G "C5'" "H5''" sing N N 85 G "C4'" "O4'" sing N N 86 G "C4'" "C3'" sing N N 87 G "C4'" "H4'" sing N N 88 G "O4'" "C1'" sing N N 89 G "C3'" "O3'" sing N N 90 G "C3'" "C2'" sing N N 91 G "C3'" "H3'" sing N N 92 G "O3'" "HO3'" sing N N 93 G "C2'" "O2'" sing N N 94 G "C2'" "C1'" sing N N 95 G "C2'" "H2'" sing N N 96 G "O2'" "HO2'" sing N N 97 G "C1'" N9 sing N N 98 G "C1'" "H1'" sing N N 99 G N9 C8 sing Y N 100 G N9 C4 sing Y N 101 G C8 N7 doub Y N 102 G C8 H8 sing N N 103 G N7 C5 sing Y N 104 G C5 C6 sing N N 105 G C5 C4 doub Y N 106 G C6 O6 doub N N 107 G C6 N1 sing N N 108 G N1 C2 sing N N 109 G N1 H1 sing N N 110 G C2 N2 sing N N 111 G C2 N3 doub N N 112 G N2 H21 sing N N 113 G N2 H22 sing N N 114 G N3 C4 sing N N 115 U OP3 P sing N N 116 U OP3 HOP3 sing N N 117 U P OP1 doub N N 118 U P OP2 sing N N 119 U P "O5'" sing N N 120 U OP2 HOP2 sing N N 121 U "O5'" "C5'" sing N N 122 U "C5'" "C4'" sing N N 123 U "C5'" "H5'" sing N N 124 U "C5'" "H5''" sing N N 125 U "C4'" "O4'" sing N N 126 U "C4'" "C3'" sing N N 127 U "C4'" "H4'" sing N N 128 U "O4'" "C1'" sing N N 129 U "C3'" "O3'" sing N N 130 U "C3'" "C2'" sing N N 131 U "C3'" "H3'" sing N N 132 U "O3'" "HO3'" sing N N 133 U "C2'" "O2'" sing N N 134 U "C2'" "C1'" sing N N 135 U "C2'" "H2'" sing N N 136 U "O2'" "HO2'" sing N N 137 U "C1'" N1 sing N N 138 U "C1'" "H1'" sing N N 139 U N1 C2 sing N N 140 U N1 C6 sing N N 141 U C2 O2 doub N N 142 U C2 N3 sing N N 143 U N3 C4 sing N N 144 U N3 H3 sing N N 145 U C4 O4 doub N N 146 U C4 C5 sing N N 147 U C5 C6 doub N N 148 U C5 H5 sing N N 149 U C6 H6 sing N N 150 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2NOK 'double helix' 2NOK 'a-form double helix' 2NOK 'bulge loop' 2NOK 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A C 1 1_555 B G 19 1_555 0.128 -0.164 0.547 0.864 -13.342 -6.233 1 A_C47:G116_B A 47 ? B 116 ? 19 1 1 A G 2 1_555 B C 18 1_555 -0.271 -0.225 0.079 0.913 -8.877 -0.673 2 A_G48:C115_B A 48 ? B 115 ? 19 1 1 A G 3 1_555 B C 17 1_555 0.299 -0.131 -0.016 -5.542 -9.715 -2.906 3 A_G49:C114_B A 49 ? B 114 ? 19 1 1 A A 4 1_555 B U 16 1_555 0.434 -0.136 0.316 -1.598 -5.328 4.091 4 A_A50:U113_B A 50 ? B 113 ? 20 1 1 A G 5 1_555 B C 15 1_555 0.741 -0.406 0.476 2.064 -5.996 -6.349 5 A_G51:C112_B A 51 ? B 112 ? 19 1 1 A G 6 1_555 B C 14 1_555 -0.156 -0.121 -0.040 -1.801 -18.645 -0.984 6 A_G52:C111_B A 52 ? B 111 ? 19 1 1 A C 12 1_555 B G 13 1_555 -0.759 -0.131 -0.184 7.297 -10.021 -5.364 7 A_C58:G110_B A 58 ? B 110 ? 19 1 1 A U 13 1_555 B A 12 1_555 -0.681 -0.448 0.248 11.845 -17.250 -18.482 8 A_U59:A109_B A 59 ? B 109 ? 20 1 1 A G 14 1_555 B C 11 1_555 -0.688 -0.462 0.109 5.155 -9.142 0.920 9 A_G60:C108_B A 60 ? B 108 ? 19 1 1 A U 15 1_555 B G 10 1_555 1.883 -0.687 0.446 -2.853 -6.390 -9.674 10 A_U61:G107_B A 61 ? B 107 ? 28 1 1 A C 16 1_555 B G 8 1_555 -0.654 0.345 -0.432 16.322 -10.511 4.063 11 A_C62:G105_B A 62 ? B 105 ? 19 1 1 A U 17 1_555 B C 7 1_555 1.117 -1.718 0.169 13.517 -15.507 0.901 12 A_U63:C104_B A 63 ? B 104 ? 18 1 1 A U 18 1_555 B U 6 1_555 -2.134 -1.681 -0.204 -15.209 -5.921 -8.162 13 A_U64:U103_B A 64 ? B 103 ? 16 1 1 A C 19 1_555 B G 5 1_555 0.526 0.634 -0.618 2.093 -7.009 13.701 14 A_C65:G102_B A 65 ? B 102 ? ? ? 1 A A 20 1_555 B U 4 1_555 -0.861 0.262 0.603 -3.105 -1.167 -0.318 15 A_A66:U101_B A 66 ? B 101 ? ? ? 1 A C 21 1_555 B G 3 1_555 1.091 0.252 -0.626 5.334 -14.942 17.595 16 A_C67:G100_B A 67 ? B 100 ? ? 1 1 A G 22 1_555 B C 2 1_555 0.630 0.182 0.278 -2.406 -7.062 -1.562 17 A_G68:C99_B A 68 ? B 99 ? 19 1 1 A C 23 1_555 B G 1 1_555 0.046 0.193 0.230 -6.387 -14.313 8.077 18 A_C69:G98_B A 69 ? B 98 ? ? 1 1 C C 1 1_555 D G 19 1_555 -0.383 -0.367 0.188 0.594 -9.121 -9.737 19 C_C47:G116_D C 47 ? D 116 ? 19 1 1 C G 2 1_555 D C 18 1_555 0.223 -0.460 -0.010 -0.020 -1.800 -7.778 20 C_G48:C115_D C 48 ? D 115 ? 19 1 1 C G 3 1_555 D C 17 1_555 0.512 -0.187 -0.516 -13.116 -10.747 -4.647 21 C_G49:C114_D C 49 ? D 114 ? 19 1 1 C A 4 1_555 D U 16 1_555 0.099 -0.024 0.181 -6.194 -11.336 1.080 22 C_A50:U113_D C 50 ? D 113 ? 20 1 1 C G 5 1_555 D C 15 1_555 0.077 -0.412 0.413 2.058 -5.932 -1.990 23 C_G51:C112_D C 51 ? D 112 ? 19 1 1 C G 6 1_555 D C 14 1_555 -0.657 0.016 -0.111 -3.571 -20.029 7.449 24 C_G52:C111_D C 52 ? D 111 ? ? 1 1 C C 12 1_555 D G 13 1_555 -0.554 -0.097 0.195 2.272 -8.690 -8.537 25 C_C58:G110_D C 58 ? D 110 ? 19 1 1 C U 13 1_555 D A 12 1_555 -0.640 -0.117 -0.384 15.234 -22.240 -14.550 26 C_U59:A109_D C 59 ? D 109 ? 20 1 1 C G 14 1_555 D C 11 1_555 0.115 -0.243 -0.192 -0.137 -9.273 -1.450 27 C_G60:C108_D C 60 ? D 108 ? 19 1 1 C U 15 1_555 D G 10 1_555 2.353 -0.827 0.028 7.476 -7.266 -2.533 28 C_U61:G107_D C 61 ? D 107 ? 28 1 1 C C 16 1_555 D G 8 1_555 -0.527 -0.301 -0.719 11.058 -2.748 -4.944 29 C_C62:G105_D C 62 ? D 105 ? 19 1 1 C U 17 1_555 D C 7 1_555 0.487 3.344 -0.459 1.967 -29.311 -65.171 30 C_U63:C104_D C 63 ? D 104 ? ? 3 1 C U 18 1_555 D U 6 1_555 -1.784 -1.366 0.067 -15.257 -9.924 10.231 31 C_U64:U103_D C 64 ? D 103 ? 16 1 1 C C 19 1_555 D G 5 1_555 -0.034 0.178 -0.471 0.021 -19.860 14.489 32 C_C65:G102_D C 65 ? D 102 ? ? 1 1 C A 20 1_555 D U 4 1_555 -1.233 -0.215 0.616 -1.848 1.666 10.426 33 C_A66:U101_D C 66 ? D 101 ? 20 1 1 C C 21 1_555 D G 3 1_555 0.894 -0.303 0.234 -0.092 -16.614 -16.303 34 C_C67:G100_D C 67 ? D 100 ? ? 1 1 C G 22 1_555 D C 2 1_555 0.749 -0.026 0.934 4.345 -15.835 0.567 35 C_G68:C99_D C 68 ? D 99 ? 19 1 1 C C 23 1_555 D G 1 1_555 -1.159 0.244 -0.033 2.529 -11.376 -8.553 36 C_C69:G98_D C 69 ? D 98 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A C 1 1_555 B G 19 1_555 A G 2 1_555 B C 18 1_555 -0.153 -1.979 3.056 2.016 6.177 32.280 -4.418 0.571 2.629 10.971 -3.581 32.911 1 AA_C47G48:C115G116_BB A 47 ? B 116 ? A 48 ? B 115 ? 1 A G 2 1_555 B C 18 1_555 A G 3 1_555 B C 17 1_555 -0.144 -2.207 3.312 0.106 5.750 31.006 -5.082 0.283 2.866 10.642 -0.197 31.522 2 AA_G48G49:C114C115_BB A 48 ? B 115 ? A 49 ? B 114 ? 1 A G 3 1_555 B C 17 1_555 A A 4 1_555 B U 16 1_555 0.728 -1.713 3.099 -0.644 8.729 30.249 -4.585 -1.448 2.504 16.303 1.202 31.462 3 AA_G49A50:U113C114_BB A 49 ? B 114 ? A 50 ? B 113 ? 1 A A 4 1_555 B U 16 1_555 A G 5 1_555 B C 15 1_555 0.411 -2.048 2.911 0.304 5.044 35.392 -3.954 -0.632 2.607 8.245 -0.498 35.740 4 AA_A50G51:C112U113_BB A 50 ? B 113 ? A 51 ? B 112 ? 1 A G 5 1_555 B C 15 1_555 A G 6 1_555 B C 14 1_555 0.662 -1.614 3.495 8.787 1.912 27.179 -3.737 0.823 3.418 3.934 -18.082 28.602 5 AA_G51G52:C111C112_BB A 51 ? B 112 ? A 52 ? B 111 ? 1 A C 12 1_555 B G 13 1_555 A U 13 1_555 B A 12 1_555 -0.414 -2.400 3.167 -11.967 14.025 27.383 -6.229 -0.969 1.791 26.196 22.352 32.913 6 AA_C58U59:A109G110_BB A 58 ? B 110 ? A 59 ? B 109 ? 1 A U 13 1_555 B A 12 1_555 A G 14 1_555 B C 11 1_555 0.680 -1.631 3.210 -0.510 6.456 35.871 -3.450 -1.153 2.873 10.378 0.821 36.432 7 AA_U59G60:C108A109_BB A 59 ? B 109 ? A 60 ? B 108 ? 1 A G 14 1_555 B C 11 1_555 A U 15 1_555 B G 10 1_555 -0.034 -1.357 3.450 -2.180 4.231 47.405 -2.032 -0.139 3.322 5.247 2.703 47.630 8 AA_G60U61:G107C108_BB A 60 ? B 108 ? A 61 ? B 107 ? 1 A U 15 1_555 B G 10 1_555 A C 16 1_555 B G 8 1_555 -0.965 -2.747 2.867 5.021 2.944 9.660 -16.967 10.004 1.313 15.743 -26.849 11.275 9 AA_U61C62:G105G107_BB A 61 ? B 107 ? A 62 ? B 105 ? 1 A C 16 1_555 B G 8 1_555 A U 17 1_555 B C 7 1_555 1.037 -0.670 3.464 -5.301 4.311 45.519 -1.241 -1.799 3.257 5.535 6.806 46.002 10 AA_C62U63:C104G105_BB A 62 ? B 105 ? A 63 ? B 104 ? 1 A U 17 1_555 B C 7 1_555 A U 18 1_555 B U 6 1_555 -0.880 -1.969 3.704 3.395 23.808 28.220 -6.059 1.810 1.529 40.733 -5.808 36.918 11 AA_U63U64:U103C104_BB A 63 ? B 104 ? A 64 ? B 103 ? 1 A U 18 1_555 B U 6 1_555 A C 19 1_555 B G 5 1_555 1.352 -1.440 2.608 3.221 3.525 40.186 -2.396 -1.668 2.575 5.108 -4.667 40.457 12 AA_U64C65:G102U103_BB A 64 ? B 103 ? A 65 ? B 102 ? 1 A C 19 1_555 B G 5 1_555 A A 20 1_555 B U 4 1_555 -0.743 -1.839 2.739 -11.828 23.479 21.785 -5.627 0.018 0.771 45.567 22.955 34.020 13 AA_C65A66:U101G102_BB A 65 ? B 102 ? A 66 ? B 101 ? 1 A A 20 1_555 B U 4 1_555 A C 21 1_555 B G 3 1_555 -0.778 -1.747 2.966 7.590 6.087 44.139 -2.741 1.594 2.556 7.985 -9.957 45.146 14 AA_A66C67:G100U101_BB A 66 ? B 101 ? A 67 ? B 100 ? 1 A C 21 1_555 B G 3 1_555 A G 22 1_555 B C 2 1_555 -1.156 -1.341 3.045 -8.665 19.168 24.258 -5.396 0.757 1.838 37.784 17.080 32.005 15 AA_C67G68:C99G100_BB A 67 ? B 100 ? A 68 ? B 99 ? 1 A G 22 1_555 B C 2 1_555 A C 23 1_555 B G 1 1_555 0.187 -1.880 3.490 -0.448 -6.705 33.003 -2.018 -0.406 3.785 -11.653 0.778 33.662 16 AA_G68C69:G98C99_BB A 68 ? B 99 ? A 69 ? B 98 ? 1 C C 1 1_555 D G 19 1_555 C G 2 1_555 D C 18 1_555 -0.621 -2.100 3.129 0.461 8.172 36.802 -4.194 1.015 2.613 12.751 -0.719 37.670 17 CC_C47G48:C115G116_DD C 47 ? D 116 ? C 48 ? D 115 ? 1 C G 2 1_555 D C 18 1_555 C G 3 1_555 D C 17 1_555 0.439 -2.486 3.735 4.475 9.256 30.951 -6.119 0.033 2.923 16.774 -8.110 32.574 18 CC_G48G49:C114C115_DD C 48 ? D 115 ? C 49 ? D 114 ? 1 C G 3 1_555 D C 17 1_555 C A 4 1_555 D U 16 1_555 0.536 -1.369 2.906 -1.848 10.645 28.249 -4.380 -1.332 2.217 20.870 3.624 30.205 19 CC_G49A50:U113C114_DD C 49 ? D 114 ? C 50 ? D 113 ? 1 C A 4 1_555 D U 16 1_555 C G 5 1_555 D C 15 1_555 0.190 -1.712 3.057 1.073 4.119 31.397 -3.822 -0.170 2.820 7.569 -1.971 31.677 20 CC_A50G51:C112U113_DD C 50 ? D 113 ? C 51 ? D 112 ? 1 C G 5 1_555 D C 15 1_555 C G 6 1_555 D C 14 1_555 1.054 -1.510 3.603 8.946 3.701 29.730 -3.593 -0.052 3.554 6.985 -16.880 31.233 21 CC_G51G52:C111C112_DD C 51 ? D 112 ? C 52 ? D 111 ? 1 C C 12 1_555 D G 13 1_555 C U 13 1_555 D A 12 1_555 -0.635 -2.031 2.949 -3.129 13.365 27.490 -5.881 0.724 1.845 26.159 6.124 30.667 22 CC_C58U59:A109G110_DD C 58 ? D 110 ? C 59 ? D 109 ? 1 C U 13 1_555 D A 12 1_555 C G 14 1_555 D C 11 1_555 0.668 -1.694 3.683 -2.505 11.011 35.193 -4.233 -1.409 2.984 17.658 4.017 36.906 23 CC_U59G60:C108A109_DD C 59 ? D 109 ? C 60 ? D 108 ? 1 C G 14 1_555 D C 11 1_555 C U 15 1_555 D G 10 1_555 0.412 -1.057 2.991 0.329 5.057 45.252 -1.765 -0.507 2.866 6.547 -0.426 45.520 24 CC_G60U61:G107C108_DD C 60 ? D 108 ? C 61 ? D 107 ? 1 C U 15 1_555 D G 10 1_555 C C 16 1_555 D G 8 1_555 -1.887 -2.841 3.419 3.566 2.105 1.874 -44.228 38.025 -1.386 33.382 -56.544 4.546 25 CC_U61C62:G105G107_DD C 61 ? D 107 ? C 62 ? D 105 ? 1 C C 16 1_555 D G 8 1_555 C U 17 1_555 D C 7 1_555 3.203 -2.908 3.028 2.043 11.314 85.888 -2.345 -2.297 2.766 8.272 -1.494 86.506 26 CC_C62U63:C104G105_DD C 62 ? D 105 ? C 63 ? D 104 ? 1 C U 17 1_555 D C 7 1_555 C U 18 1_555 D U 6 1_555 -1.043 0.957 3.428 6.132 21.467 -9.442 -8.624 -0.674 0.762 -64.770 18.500 -24.217 27 CC_U63U64:U103C104_DD C 63 ? D 104 ? C 64 ? D 103 ? 1 C U 18 1_555 D U 6 1_555 C C 19 1_555 D G 5 1_555 0.254 -0.800 2.885 8.871 1.807 33.724 -1.577 0.770 2.814 3.047 -14.959 34.884 28 CC_U64C65:G102U103_DD C 64 ? D 103 ? C 65 ? D 102 ? 1 C C 19 1_555 D G 5 1_555 C A 20 1_555 D U 4 1_555 -0.216 -1.679 2.822 -15.034 27.901 23.926 -4.692 -0.871 0.643 47.416 25.550 39.525 29 CC_C65A66:U101G102_DD C 65 ? D 102 ? C 66 ? D 101 ? 1 C A 20 1_555 D U 4 1_555 C C 21 1_555 D G 3 1_555 -1.416 -1.896 3.101 1.321 -1.538 45.096 -2.339 1.957 3.120 -2.005 -1.722 45.139 30 CC_A66C67:G100U101_DD C 66 ? D 101 ? C 67 ? D 100 ? 1 C C 21 1_555 D G 3 1_555 C G 22 1_555 D C 2 1_555 0.280 -2.122 2.676 -3.742 18.121 29.806 -5.285 -0.829 1.186 31.681 6.542 34.972 31 CC_C67G68:C99G100_DD C 67 ? D 100 ? C 68 ? D 99 ? 1 C G 22 1_555 D C 2 1_555 C C 23 1_555 D G 1 1_555 -0.353 -2.118 3.261 2.653 1.850 25.641 -5.234 1.504 3.051 4.147 -5.947 25.841 32 CC_G68C69:G98C99_DD C 68 ? D 99 ? C 69 ? D 98 ? # _atom_sites.entry_id 2NOK _atom_sites.fract_transf_matrix[1][1] 0.016104 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.015302 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.010823 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG MN N O P # loop_