HEADER TRANSCRIPTION 26-OCT-06 2NP3 TITLE CRYSTAL STRUCTURE OF TETR-FAMILY REGULATOR (SCO0857) FROM STREPTOMYCES TITLE 2 COELICOLOR A3. COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE TETR-FAMILY REGULATOR; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 1902; SOURCE 4 GENE: SCO0857; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 STAR MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15TV LIC KEYWDS TETR, TRANSCRIPTIONAL REGULATOR, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR K.D.KOCLEGA,X.XU,M.CHRUSZCZ,J.GU,M.CYMBOROWSKI,A.SAVCHENKO,A.EDWARDS, AUTHOR 2 A.JOACHIMIAK,W.MINOR,MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 27-DEC-23 2NP3 1 REMARK REVDAT 4 13-APR-22 2NP3 1 AUTHOR JRNL SEQADV LINK REVDAT 3 05-OCT-11 2NP3 1 AUTHOR VERSN REVDAT 2 24-FEB-09 2NP3 1 VERSN REVDAT 1 28-NOV-06 2NP3 0 JRNL AUTH K.D.KOCLEGA,X.XU,M.CHRUSZCZ,J.GU,M.CYMBOROWSKI,A.SAVCHENKO, JRNL AUTH 2 A.EDWARDS,W.MINOR, JRNL AUTH 3 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) JRNL TITL CRYSTAL STRUCTURE OF TETR-FAMILY REGULATOR (SCO0857) FROM JRNL TITL 2 STREPTOMYCES COELICOLOR A3. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.35 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.35 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 41.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16794 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.200 REMARK 3 FREE R VALUE TEST SET COUNT : 917 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.35 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.41 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1150 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 64 REMARK 3 BIN FREE R VALUE : 0.2760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2339 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 27 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.10000 REMARK 3 B22 (A**2) : 0.27000 REMARK 3 B33 (A**2) : 0.83000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.307 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.239 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.180 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 15.637 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.933 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.923 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2397 ; 0.021 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3248 ; 1.802 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 325 ; 6.417 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;32.548 ;21.149 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 394 ;17.340 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;21.397 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 397 ; 0.121 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1758 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1103 ; 0.232 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1667 ; 0.297 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 84 ; 0.162 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 23 ; 0.341 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.085 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1649 ; 1.735 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2530 ; 1.687 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 842 ; 3.528 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 715 ; 5.021 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. BOTH REFMAC 5.2.0005 AND COOT WERE USED FOR REMARK 3 REFINEMENT. REMARK 4 REMARK 4 2NP3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-OCT-06. REMARK 100 THE DEPOSITION ID IS D_1000040130. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9771 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16794 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.350 REMARK 200 RESOLUTION RANGE LOW (A) : 41.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.35 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.43 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 6.30 REMARK 200 R MERGE FOR SHELL (I) : 0.38000 REMARK 200 R SYM FOR SHELL (I) : 0.32500 REMARK 200 FOR SHELL : 3.500 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SHELXD, MLPHARE, DM, SOLVE, RESOLVE, CCP4 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M HAMPTON PH 4.4, 0.05M K REMARK 280 THIOCYANATE, 25% PEG2KMME, VAPOR DIFFUSION, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 23.71550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.96900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 46.38400 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.96900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 23.71550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 46.38400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2660 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14380 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 GLY A 3 REMARK 465 GLN A 4 REMARK 465 ALA A 5 REMARK 465 ALA A 6 REMARK 465 GLY A 7 REMARK 465 PRO A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 GLY A 11 REMARK 465 PRO A 12 REMARK 465 ALA A 13 REMARK 465 ALA A 14 REMARK 465 GLY A 15 REMARK 465 GLN A 16 REMARK 465 ALA A 17 REMARK 465 THR A 18 REMARK 465 LYS A 19 REMARK 465 HIS A 20 REMARK 465 ALA A 21 REMARK 465 GLY A 22 REMARK 465 GLY A 23 REMARK 465 ARG A 24 REMARK 465 ARG A 25 REMARK 465 PRO A 26 REMARK 465 GLY A 27 REMARK 465 GLU A 28 REMARK 465 THR A 29 REMARK 465 ARG A 30 REMARK 465 THR A 31 REMARK 465 ARG A 32 REMARK 465 GLU A 33 REMARK 465 ALA A 34 REMARK 465 ALA A 44 REMARK 465 GLU A 45 REMARK 465 ARG A 46 REMARK 465 GLY A 47 REMARK 465 PHE A 48 REMARK 465 ASP A 49 REMARK 465 ALA A 50 REMARK 465 THR A 51 REMARK 465 SER A 52 REMARK 465 LEU A 53 REMARK 465 ARG A 54 REMARK 465 ARG A 55 REMARK 465 ILE A 56 REMARK 465 ALA A 57 REMARK 465 GLU A 58 REMARK 465 THR A 59 REMARK 465 ALA A 60 REMARK 465 GLY A 61 REMARK 465 VAL A 62 REMARK 465 ASP A 63 REMARK 465 GLN A 64 REMARK 465 SER A 65 REMARK 465 LEU A 66 REMARK 465 VAL A 67 REMARK 465 HIS A 68 REMARK 465 HIS A 69 REMARK 465 PHE A 70 REMARK 465 ALA A 131 REMARK 465 ALA A 132 REMARK 465 ILE A 133 REMARK 465 HIS A 134 REMARK 465 ARG A 135 REMARK 465 ALA A 136 REMARK 465 ALA A 137 REMARK 465 ASP A 212 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 GLY B 3 REMARK 465 GLN B 4 REMARK 465 ALA B 5 REMARK 465 ALA B 6 REMARK 465 GLY B 7 REMARK 465 PRO B 8 REMARK 465 ALA B 9 REMARK 465 ALA B 10 REMARK 465 GLY B 11 REMARK 465 PRO B 12 REMARK 465 ALA B 13 REMARK 465 ALA B 14 REMARK 465 GLY B 15 REMARK 465 GLN B 16 REMARK 465 ALA B 17 REMARK 465 THR B 18 REMARK 465 LYS B 19 REMARK 465 HIS B 20 REMARK 465 ALA B 21 REMARK 465 ALA B 132 REMARK 465 ILE B 133 REMARK 465 HIS B 134 REMARK 465 ARG B 135 REMARK 465 ALA B 136 REMARK 465 ALA B 137 REMARK 465 ALA B 138 REMARK 465 ALA B 139 REMARK 465 ARG B 140 REMARK 465 ARG B 211 REMARK 465 ASP B 212 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 35 CG1 CG2 CD1 REMARK 470 VAL A 41 CG1 CG2 REMARK 470 TYR A 71 CB CG CD1 CD2 CE1 CE2 CZ REMARK 470 TYR A 71 OH REMARK 470 LYS A 74 O CG CD CE NZ REMARK 470 GLU A 75 CG CD OE1 OE2 REMARK 470 LEU A 77 CG CD1 CD2 REMARK 470 GLU A 90 CD OE1 OE2 REMARK 470 GLN A 97 CG CD OE1 NE2 REMARK 470 LEU A 100 CG CD1 CD2 REMARK 470 SER A 130 OG REMARK 470 ARG A 140 CD NE CZ NH1 NH2 REMARK 470 GLU A 160 CD OE1 OE2 REMARK 470 ASP A 194 OD1 OD2 REMARK 470 ASP A 210 CG OD1 OD2 REMARK 470 ARG A 211 CA C O CB CG CD NE REMARK 470 ARG A 211 CZ NH1 NH2 REMARK 470 GLU B 58 CD OE1 OE2 REMARK 470 GLU B 90 CD OE1 OE2 REMARK 470 ASP B 101 OD1 OD2 REMARK 470 ARG B 129 CZ NH1 NH2 REMARK 470 ARG B 198 CG CD NE CZ NH1 NH2 REMARK 470 ARG B 202 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 30 NE - CZ - NH1 ANGL. DEV. = -3.5 DEGREES REMARK 500 ARG B 30 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG B 40 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 74 -19.62 -47.90 REMARK 500 GLU A 83 -41.88 68.56 REMARK 500 VAL A 156 -27.16 -148.10 REMARK 500 ARG B 24 -58.49 -28.90 REMARK 500 VAL B 62 -153.07 -122.79 REMARK 500 GLU B 83 -45.50 75.93 REMARK 500 VAL B 182 -61.18 -123.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6214 RELATED DB: TARGETDB DBREF 2NP3 A 1 212 UNP Q9RCV4 Q9RCV4_STRCO 1 212 DBREF 2NP3 B 1 212 UNP Q9RCV4 Q9RCV4_STRCO 1 212 SEQADV 2NP3 MSE A 1 UNP Q9RCV4 MET 1 MODIFIED RESIDUE SEQADV 2NP3 MSE A 125 UNP Q9RCV4 MET 125 MODIFIED RESIDUE SEQADV 2NP3 MSE A 127 UNP Q9RCV4 MET 127 MODIFIED RESIDUE SEQADV 2NP3 MSE A 163 UNP Q9RCV4 MET 163 MODIFIED RESIDUE SEQADV 2NP3 MSE A 168 UNP Q9RCV4 MET 168 MODIFIED RESIDUE SEQADV 2NP3 MSE A 178 UNP Q9RCV4 MET 178 MODIFIED RESIDUE SEQADV 2NP3 MSE A 179 UNP Q9RCV4 MET 179 MODIFIED RESIDUE SEQADV 2NP3 MSE B 1 UNP Q9RCV4 MET 1 MODIFIED RESIDUE SEQADV 2NP3 MSE B 125 UNP Q9RCV4 MET 125 MODIFIED RESIDUE SEQADV 2NP3 MSE B 127 UNP Q9RCV4 MET 127 MODIFIED RESIDUE SEQADV 2NP3 MSE B 163 UNP Q9RCV4 MET 163 MODIFIED RESIDUE SEQADV 2NP3 MSE B 168 UNP Q9RCV4 MET 168 MODIFIED RESIDUE SEQADV 2NP3 MSE B 178 UNP Q9RCV4 MET 178 MODIFIED RESIDUE SEQADV 2NP3 MSE B 179 UNP Q9RCV4 MET 179 MODIFIED RESIDUE SEQRES 1 A 212 MSE THR GLY GLN ALA ALA GLY PRO ALA ALA GLY PRO ALA SEQRES 2 A 212 ALA GLY GLN ALA THR LYS HIS ALA GLY GLY ARG ARG PRO SEQRES 3 A 212 GLY GLU THR ARG THR ARG GLU ALA ILE LEU THR ALA ALA SEQRES 4 A 212 ARG VAL CYS PHE ALA GLU ARG GLY PHE ASP ALA THR SER SEQRES 5 A 212 LEU ARG ARG ILE ALA GLU THR ALA GLY VAL ASP GLN SER SEQRES 6 A 212 LEU VAL HIS HIS PHE TYR GLY THR LYS GLU ASN LEU PHE SEQRES 7 A 212 LEU GLN ALA LEU GLU LEU PRO GLY LYS ILE GLU GLU ALA SEQRES 8 A 212 ILE THR ALA ALA ALA GLN GLY GLY LEU ASP GLY ILE GLY SEQRES 9 A 212 GLU ARG VAL VAL ARG ALA HIS LEU SER VAL TRP ASP ASP SEQRES 10 A 212 VAL SER SER ARG PRO ALA LEU MSE THR MSE VAL ARG SER SEQRES 11 A 212 ALA ALA ILE HIS ARG ALA ALA ALA ALA ARG LEU ARG GLU SEQRES 12 A 212 THR ALA THR GLY ILE LEU ALA ARG ALA LEU GLY GLY VAL SEQRES 13 A 212 ILE THR GLY GLU ASP ALA MSE LEU ARG THR SER MSE VAL SEQRES 14 A 212 ALA THR GLN LEU VAL GLY LEU ALA MSE MSE ARG TYR VAL SEQRES 15 A 212 ALA HIS LEU GLU PRO LEU ALA SER ALA ASP THR ASP THR SEQRES 16 A 212 VAL ALA ARG HIS TYR GLY ARG ALA VAL GLN ALA ILE VAL SEQRES 17 A 212 THR ASP ARG ASP SEQRES 1 B 212 MSE THR GLY GLN ALA ALA GLY PRO ALA ALA GLY PRO ALA SEQRES 2 B 212 ALA GLY GLN ALA THR LYS HIS ALA GLY GLY ARG ARG PRO SEQRES 3 B 212 GLY GLU THR ARG THR ARG GLU ALA ILE LEU THR ALA ALA SEQRES 4 B 212 ARG VAL CYS PHE ALA GLU ARG GLY PHE ASP ALA THR SER SEQRES 5 B 212 LEU ARG ARG ILE ALA GLU THR ALA GLY VAL ASP GLN SER SEQRES 6 B 212 LEU VAL HIS HIS PHE TYR GLY THR LYS GLU ASN LEU PHE SEQRES 7 B 212 LEU GLN ALA LEU GLU LEU PRO GLY LYS ILE GLU GLU ALA SEQRES 8 B 212 ILE THR ALA ALA ALA GLN GLY GLY LEU ASP GLY ILE GLY SEQRES 9 B 212 GLU ARG VAL VAL ARG ALA HIS LEU SER VAL TRP ASP ASP SEQRES 10 B 212 VAL SER SER ARG PRO ALA LEU MSE THR MSE VAL ARG SER SEQRES 11 B 212 ALA ALA ILE HIS ARG ALA ALA ALA ALA ARG LEU ARG GLU SEQRES 12 B 212 THR ALA THR GLY ILE LEU ALA ARG ALA LEU GLY GLY VAL SEQRES 13 B 212 ILE THR GLY GLU ASP ALA MSE LEU ARG THR SER MSE VAL SEQRES 14 B 212 ALA THR GLN LEU VAL GLY LEU ALA MSE MSE ARG TYR VAL SEQRES 15 B 212 ALA HIS LEU GLU PRO LEU ALA SER ALA ASP THR ASP THR SEQRES 16 B 212 VAL ALA ARG HIS TYR GLY ARG ALA VAL GLN ALA ILE VAL SEQRES 17 B 212 THR ASP ARG ASP MODRES 2NP3 MSE A 125 MET SELENOMETHIONINE MODRES 2NP3 MSE A 127 MET SELENOMETHIONINE MODRES 2NP3 MSE A 163 MET SELENOMETHIONINE MODRES 2NP3 MSE A 168 MET SELENOMETHIONINE MODRES 2NP3 MSE A 178 MET SELENOMETHIONINE MODRES 2NP3 MSE A 179 MET SELENOMETHIONINE MODRES 2NP3 MSE B 125 MET SELENOMETHIONINE MODRES 2NP3 MSE B 127 MET SELENOMETHIONINE MODRES 2NP3 MSE B 163 MET SELENOMETHIONINE MODRES 2NP3 MSE B 168 MET SELENOMETHIONINE MODRES 2NP3 MSE B 178 MET SELENOMETHIONINE MODRES 2NP3 MSE B 179 MET SELENOMETHIONINE HET MSE A 125 8 HET MSE A 127 8 HET MSE A 163 8 HET MSE A 168 8 HET MSE A 178 13 HET MSE A 179 8 HET MSE B 125 8 HET MSE B 127 8 HET MSE B 163 8 HET MSE B 168 8 HET MSE B 178 16 HET MSE B 179 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 12(C5 H11 N O2 SE) FORMUL 3 HOH *27(H2 O) HELIX 1 1 ILE A 35 PHE A 43 1 9 HELIX 2 2 GLU A 75 GLU A 83 1 9 HELIX 3 3 GLU A 83 ALA A 96 1 14 HELIX 4 4 GLY A 102 SER A 120 1 19 HELIX 5 5 ARG A 121 SER A 130 1 10 HELIX 6 6 ALA A 138 GLY A 154 1 17 HELIX 7 7 ASP A 161 VAL A 182 1 22 HELIX 8 8 PRO A 187 ALA A 191 5 5 HELIX 9 9 ASP A 192 THR A 209 1 18 HELIX 10 10 GLY B 27 THR B 51 1 25 HELIX 11 11 SER B 52 GLY B 61 1 10 HELIX 12 12 ASP B 63 GLY B 72 1 10 HELIX 13 13 THR B 73 GLU B 83 1 11 HELIX 14 14 GLU B 83 ALA B 96 1 14 HELIX 15 15 GLY B 102 SER B 120 1 19 HELIX 16 16 ARG B 121 ALA B 131 1 11 HELIX 17 17 LEU B 141 LEU B 153 1 13 HELIX 18 18 ASP B 161 VAL B 182 1 22 HELIX 19 19 ASP B 192 ASP B 210 1 19 LINK C LEU A 124 N MSE A 125 1555 1555 1.33 LINK C MSE A 125 N THR A 126 1555 1555 1.35 LINK C THR A 126 N MSE A 127 1555 1555 1.33 LINK C MSE A 127 N VAL A 128 1555 1555 1.34 LINK C ALA A 162 N MSE A 163 1555 1555 1.34 LINK C MSE A 163 N LEU A 164 1555 1555 1.33 LINK C SER A 167 N MSE A 168 1555 1555 1.34 LINK C MSE A 168 N VAL A 169 1555 1555 1.33 LINK C ALA A 177 N MSE A 178 1555 1555 1.33 LINK C MSE A 178 N MSE A 179 1555 1555 1.33 LINK C MSE A 179 N ARG A 180 1555 1555 1.33 LINK C LEU B 124 N MSE B 125 1555 1555 1.34 LINK C MSE B 125 N THR B 126 1555 1555 1.33 LINK C THR B 126 N MSE B 127 1555 1555 1.34 LINK C MSE B 127 N VAL B 128 1555 1555 1.34 LINK C ALA B 162 N MSE B 163 1555 1555 1.32 LINK C MSE B 163 N LEU B 164 1555 1555 1.33 LINK C SER B 167 N MSE B 168 1555 1555 1.33 LINK C MSE B 168 N VAL B 169 1555 1555 1.32 LINK C ALA B 177 N AMSE B 178 1555 1555 1.33 LINK C ALA B 177 N BMSE B 178 1555 1555 1.34 LINK C AMSE B 178 N MSE B 179 1555 1555 1.33 LINK C BMSE B 178 N MSE B 179 1555 1555 1.33 LINK C MSE B 179 N ARG B 180 1555 1555 1.32 CISPEP 1 GLU A 186 PRO A 187 0 1.74 CISPEP 2 GLU B 186 PRO B 187 0 0.59 CRYST1 47.431 92.768 93.938 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021083 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010780 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010645 0.00000