HEADER TRANSPORT PROTEIN 30-OCT-06 2NPS TITLE CRYSTAL STRUCTURE OF THE EARLY ENDOSOMAL SNARE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: VESICLE-ASSOCIATED MEMBRANE PROTEIN 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: VAMP4 SNARE MOTIF, RESIDUES 47-117; COMPND 5 SYNONYM: VAMP-4; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: SYNTAXIN 13; COMPND 9 CHAIN: B; COMPND 10 FRAGMENT: SYNTAXIN 13 SNARE MOTIF, RESIDUES 177-244; COMPND 11 ENGINEERED: YES; COMPND 12 MOL_ID: 3; COMPND 13 MOLECULE: VESICLE TRANSPORT THROUGH INTERACTION WITH T-SNARES HOMOLOG COMPND 14 1A; COMPND 15 CHAIN: C; COMPND 16 FRAGMENT: VTI1A SNARE MOTIF, RESIDUES 122-199; COMPND 17 SYNONYM: VESICLE TRANSPORT V-SNARE PROTEIN VTI1-LIKE 2, VTI1-RP2; COMPND 18 ENGINEERED: YES; COMPND 19 MOL_ID: 4; COMPND 20 MOLECULE: SYNTAXIN-6; COMPND 21 CHAIN: D; COMPND 22 FRAGMENT: SYNTAXIN 6 SNARE MOTIF, T-SNARE COILED-COIL HOMOLOGY, COMPND 23 RESIDUES 169-234; COMPND 24 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 GENE: VAMP4_PREDICTED; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 13 ORGANISM_COMMON: NORWAY RAT; SOURCE 14 ORGANISM_TAXID: 10116; SOURCE 15 GENE: SYNTAXIN 13; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 21 MOL_ID: 3; SOURCE 22 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 23 ORGANISM_COMMON: NORWAY RAT; SOURCE 24 ORGANISM_TAXID: 10116; SOURCE 25 GENE: VTI1A; SOURCE 26 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 27 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 28 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 29 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 30 EXPRESSION_SYSTEM_PLASMID: PET28A; SOURCE 31 MOL_ID: 4; SOURCE 32 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 33 ORGANISM_COMMON: HUMAN; SOURCE 34 ORGANISM_TAXID: 9606; SOURCE 35 GENE: STX6; SOURCE 36 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 37 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 38 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 39 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 40 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS VESICLE FUSION, SNARE COMPLEX, EARLY ENDOSOMAL SNARE COMPLEX, KEYWDS 2 SYNTAXIN 6, SYNTAXIN 13, VTI1A, VAMP4, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.ZWILLING,A.CYPIONKA,W.H.POHL,D.FASSHAUER,P.J.WALLA,M.C.WAHL,R.JAHN REVDAT 5 25-OCT-23 2NPS 1 REMARK SEQADV REVDAT 4 18-OCT-17 2NPS 1 REMARK REVDAT 3 24-FEB-09 2NPS 1 VERSN REVDAT 2 23-JAN-07 2NPS 1 JRNL REVDAT 1 26-DEC-06 2NPS 0 JRNL AUTH D.ZWILLING,A.CYPIONKA,W.H.POHL,D.FASSHAUER,P.J.WALLA, JRNL AUTH 2 M.C.WAHL,R.JAHN JRNL TITL EARLY ENDOSOMAL SNARES FORM A STRUCTURALLY CONSERVED SNARE JRNL TITL 2 COMPLEX AND FUSE LIPOSOMES WITH MULTIPLE TOPOLOGIES JRNL REF EMBO J. V. 26 9 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17159904 JRNL DOI 10.1038/SJ.EMBOJ.7601467 REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 87.2 REMARK 3 NUMBER OF REFLECTIONS : 9365 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 482 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.56 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 42.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.2590 REMARK 3 BIN FREE R VALUE : 0.2780 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 10 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.299 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2207 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 121 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 57.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 53.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.277 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NPS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 01-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040154. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-FEB-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 5 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9365 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.2 REMARK 200 DATA REDUNDANCY : 5.300 REMARK 200 R MERGE (I) : 0.12400 REMARK 200 R SYM (I) : 0.03900 REMARK 200 FOR THE DATA SET : 8.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 46.4 REMARK 200 DATA REDUNDANCY IN SHELL : 5.10 REMARK 200 R MERGE FOR SHELL (I) : 0.49000 REMARK 200 R SYM FOR SHELL (I) : 0.30900 REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1SFC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 41.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRISODIUM CITRATE DIHYDRATE, 36% REMARK 280 (V/V) 2-METHYL-2,4-PENTANDIOL, 0.2M LI2SO4, PH 5.6, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 126.44100 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 14.32850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 126.44100 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 14.32850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMERIC COILED-COIL REMARK 300 COMPRISED OF CHAINS A, B, C, AND D. THERE IS ONE BIOLOGICAL REMARK 300 ASSEMBLY PER ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 12160 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14870 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -99.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 45 REMARK 465 SER A 46 REMARK 465 MET A 47 REMARK 465 GLY A 48 REMARK 465 PRO A 49 REMARK 465 ARG A 113 REMARK 465 GLY A 114 REMARK 465 CYS A 115 REMARK 465 LYS A 116 REMARK 465 ILE A 117 REMARK 465 LYS A 118 REMARK 465 LYS B 249 REMARK 465 LYS B 250 REMARK 465 MET B 251 REMARK 465 ASN C 191 REMARK 465 ARG C 192 REMARK 465 GLY D 153 REMARK 465 SER D 154 REMARK 465 HIS D 155 REMARK 465 MET D 156 REMARK 465 ALA D 157 REMARK 465 SER D 158 REMARK 465 MET D 159 REMARK 465 THR D 160 REMARK 465 GLY D 161 REMARK 465 GLY D 162 REMARK 465 ASN D 163 REMARK 465 ASN D 164 REMARK 465 MET D 165 REMARK 465 GLY D 166 REMARK 465 ARG D 167 REMARK 465 MET D 168 REMARK 465 GLN D 169 REMARK 465 ARG D 233 REMARK 465 GLN D 234 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 53 CG CD CE NZ REMARK 480 ILE A 54 CD1 REMARK 480 LYS A 55 CB CG CD CE NZ REMARK 480 HIS A 56 CB CG ND1 CD2 CE1 NE2 REMARK 480 VAL A 61 CG1 CG2 REMARK 480 GLU A 63 CG CD OE1 OE2 REMARK 480 ILE A 65 CD1 REMARK 480 ILE A 72 CD1 REMARK 480 ARG A 102 CD NE REMARK 480 MET B 183 CB CG SD CE REMARK 480 ARG B 184 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU B 185 OE1 OE2 REMARK 480 THR B 186 OG1 CG2 REMARK 480 ILE B 188 CD1 REMARK 480 ILE B 201 CD1 REMARK 480 LYS B 245 CE NZ REMARK 480 LYS B 246 CG CD CE NZ REMARK 480 SER B 247 OG REMARK 480 ARG B 248 CD NE CZ NH1 NH2 REMARK 480 SER C 113 CB OG REMARK 480 MET C 114 CB CG SD CE REMARK 480 LEU C 118 CB CG CD1 CD2 REMARK 480 LEU C 119 CD1 CD2 REMARK 480 ASN C 121 OD1 ND2 REMARK 480 GLU C 123 CG CD OE1 OE2 REMARK 480 ARG C 124 CG CD NE CZ NH1 NH2 REMARK 480 LEU C 125 CD1 CD2 REMARK 480 GLU C 126 CB CG CD OE1 OE2 REMARK 480 ARG C 130 CB CG CD NE CZ NH1 NH2 REMARK 480 GLU C 133 CG CD OE1 OE2 REMARK 480 GLN C 137 CG CD OE1 NE2 REMARK 480 GLN C 144 CG CD OE1 NE2 REMARK 480 GLU C 151 CD OE1 OE2 REMARK 480 SER C 154 OG REMARK 480 GLU C 165 CD OE1 OE2 REMARK 480 ARG C 187 CG CD NE CZ NH1 NH2 REMARK 480 ILE C 188 CG1 CG2 CD1 REMARK 480 ILE C 189 CB CG1 CG2 CD1 REMARK 480 GLU D 171 CD OE1 OE2 REMARK 480 LEU D 173 CD1 CD2 REMARK 480 LEU D 175 CD1 CD2 REMARK 480 ILE D 180 CD1 REMARK 480 LEU D 183 CD1 CD2 REMARK 480 LYS D 184 CD CE NZ REMARK 480 GLU D 195 OE1 OE2 REMARK 480 LYS D 220 CG CD CE NZ REMARK 480 LYS D 224 CD CE NZ REMARK 480 SER D 230 CB OG REMARK 480 ARG D 232 CB CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 51 -105.37 110.74 REMARK 500 ASP A 52 103.70 -32.12 REMARK 500 LYS A 53 7.76 144.86 REMARK 500 ILE A 54 -68.13 -121.27 REMARK 500 VAL A 57 -19.59 -171.18 REMARK 500 GLN A 58 -80.87 -76.34 REMARK 500 ASN A 59 0.49 -46.79 REMARK 500 SER B 247 41.79 -99.50 REMARK 500 SER C 113 77.62 -57.26 REMARK 500 MET C 114 -30.58 -134.45 REMARK 500 ARG C 187 -7.04 -59.03 REMARK 500 GLU D 171 63.79 172.62 REMARK 500 ASP D 231 19.72 -172.12 REMARK 500 REMARK 500 REMARK: NULL DBREF 2NPS A 48 118 UNP O70480 VAMP4_MOUSE 47 117 DBREF 2NPS B 184 251 UNP O70319 O70319_RAT 177 244 DBREF 2NPS C 115 192 UNP Q9JI51 VTI1A_RAT 122 199 DBREF 2NPS D 169 234 UNP O43752 STX6_HUMAN 169 234 SEQADV 2NPS GLY A 45 UNP O70480 CLONING ARTIFACT SEQADV 2NPS SER A 46 UNP O70480 CLONING ARTIFACT SEQADV 2NPS MET A 47 UNP O70480 CLONING ARTIFACT SEQADV 2NPS GLY B 181 UNP O70319 CLONING ARTIFACT SEQADV 2NPS SER B 182 UNP O70319 CLONING ARTIFACT SEQADV 2NPS MET B 183 UNP O70319 CLONING ARTIFACT SEQADV 2NPS GLY C 112 UNP Q9JI51 CLONING ARTIFACT SEQADV 2NPS SER C 113 UNP Q9JI51 CLONING ARTIFACT SEQADV 2NPS MET C 114 UNP Q9JI51 CLONING ARTIFACT SEQADV 2NPS GLY D 153 UNP O43752 CLONING ARTIFACT SEQADV 2NPS SER D 154 UNP O43752 CLONING ARTIFACT SEQADV 2NPS HIS D 155 UNP O43752 CLONING ARTIFACT SEQADV 2NPS MET D 156 UNP O43752 CLONING ARTIFACT SEQADV 2NPS ALA D 157 UNP O43752 CLONING ARTIFACT SEQADV 2NPS SER D 158 UNP O43752 CLONING ARTIFACT SEQADV 2NPS MET D 159 UNP O43752 CLONING ARTIFACT SEQADV 2NPS THR D 160 UNP O43752 CLONING ARTIFACT SEQADV 2NPS GLY D 161 UNP O43752 CLONING ARTIFACT SEQADV 2NPS GLY D 162 UNP O43752 CLONING ARTIFACT SEQADV 2NPS ASN D 163 UNP O43752 CLONING ARTIFACT SEQADV 2NPS ASN D 164 UNP O43752 CLONING ARTIFACT SEQADV 2NPS MET D 165 UNP O43752 CLONING ARTIFACT SEQADV 2NPS GLY D 166 UNP O43752 CLONING ARTIFACT SEQADV 2NPS ARG D 167 UNP O43752 CLONING ARTIFACT SEQADV 2NPS MET D 168 UNP O43752 CLONING ARTIFACT SEQRES 1 A 74 GLY SER MET GLY PRO ARG ASN ASP LYS ILE LYS HIS VAL SEQRES 2 A 74 GLN ASN GLN VAL ASP GLU VAL ILE ASP VAL MET GLN GLU SEQRES 3 A 74 ASN ILE THR LYS VAL ILE GLU ARG GLY GLU ARG LEU ASP SEQRES 4 A 74 GLU LEU GLN ASP LYS SER GLU SER LEU SER ASP ASN ALA SEQRES 5 A 74 THR ALA PHE SER ASN ARG SER LYS GLN LEU ARG ARG GLN SEQRES 6 A 74 MET TRP TRP ARG GLY CYS LYS ILE LYS SEQRES 1 B 71 GLY SER MET ARG GLU THR ALA ILE GLN GLN LEU GLU ALA SEQRES 2 B 71 ASP ILE LEU ASP VAL ASN GLN ILE PHE LYS ASP LEU ALA SEQRES 3 B 71 MET MET ILE HIS ASP GLN GLY ASP LEU ILE ASP SER ILE SEQRES 4 B 71 GLU ALA ASN VAL GLU SER SER GLU VAL HIS VAL GLU ARG SEQRES 5 B 71 ALA SER ASP GLN LEU GLN ARG ALA ALA TYR TYR GLN LYS SEQRES 6 B 71 LYS SER ARG LYS LYS MET SEQRES 1 C 81 GLY SER MET ARG ALA HIS LEU LEU ASP ASN THR GLU ARG SEQRES 2 C 81 LEU GLU ARG SER SER ARG ARG LEU GLU ALA GLY TYR GLN SEQRES 3 C 81 ILE ALA VAL GLU THR GLU GLN ILE GLY GLN GLU MET LEU SEQRES 4 C 81 GLU ASN LEU SER HIS ASP ARG GLU ARG ILE GLN ARG ALA SEQRES 5 C 81 ARG GLU ARG LEU ARG GLU THR ASP ALA ASN LEU GLY LYS SEQRES 6 C 81 SER SER ARG ILE LEU THR GLY MET LEU ARG ARG ILE ILE SEQRES 7 C 81 GLN ASN ARG SEQRES 1 D 82 GLY SER HIS MET ALA SER MET THR GLY GLY ASN ASN MET SEQRES 2 D 82 GLY ARG MET GLN ASP GLU GLN LEU GLU LEU VAL SER GLY SEQRES 3 D 82 SER ILE GLY VAL LEU LYS ASN MET SER GLN ARG ILE GLY SEQRES 4 D 82 GLY GLU LEU GLU GLU GLN ALA VAL MET LEU GLU ASP PHE SEQRES 5 D 82 SER HIS GLU LEU GLU SER THR GLN SER ARG LEU ASP ASN SEQRES 6 D 82 VAL MET LYS LYS LEU ALA LYS VAL SER HIS MET THR SER SEQRES 7 D 82 ASP ARG ARG GLN FORMUL 5 HOH *121(H2 O) HELIX 1 1 ILE A 54 ASN A 59 1 6 HELIX 2 2 GLN A 60 TRP A 111 1 52 HELIX 3 3 SER B 182 LYS B 246 1 65 HELIX 4 4 ALA C 116 ARG C 130 1 15 HELIX 5 5 ARG C 130 ILE C 188 1 59 HELIX 6 6 GLN D 172 SER D 230 1 59 CRYST1 252.882 28.657 41.887 90.00 98.25 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.003954 0.000000 0.000573 0.00000 SCALE2 0.000000 0.034895 0.000000 0.00000 SCALE3 0.000000 0.000000 0.024123 0.00000