HEADER TRANSFERASE 30-OCT-06 2NPU TITLE THE SOLUTION STRUCTURE OF THE RAPAMYCIN-BINDING DOMAIN OF MTOR (FRB) COMPND MOL_ID: 1; COMPND 2 MOLECULE: FKBP12-RAPAMYCIN COMPLEX-ASSOCIATED PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: FRB; COMPND 5 SYNONYM: FK506-BINDING PROTEIN 12-RAPAMYCIN COMPLEX-ASSOCIATED COMPND 6 PROTEIN 1, RAPAMYCIN TARGET PROTEIN, RAPT1, MAMMALIAN TARGET OF COMPND 7 RAPAMYCIN, MTOR; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PPROEXHTA KEYWDS FOUR-HELIX BUNDLE, TRANSFERASE EXPDTA SOLUTION NMR NUMMDL 32 AUTHOR V.VEVERKA,T.CRABBE,I.BIRD,G.LENNIE,F.W.MUSKETT,R.J.TAYLOR,M.D.CARR REVDAT 5 14-JUN-23 2NPU 1 REMARK REVDAT 4 10-NOV-21 2NPU 1 SEQADV REVDAT 3 26-FEB-20 2NPU 1 REMARK SEQADV REVDAT 2 24-FEB-09 2NPU 1 VERSN REVDAT 1 18-SEP-07 2NPU 0 JRNL AUTH V.VEVERKA,T.CRABBE,I.BIRD,G.LENNIE,F.W.MUSKETT,R.J.TAYLOR, JRNL AUTH 2 M.D.CARR JRNL TITL STRUCTURAL CHARACTERIZATION OF THE INTERACTION OF MTOR WITH JRNL TITL 2 PHOSPHATIDIC ACID AND A NOVEL CLASS OF INHIBITOR: COMPELLING JRNL TITL 3 EVIDENCE FOR A CENTRAL ROLE OF THE FRB DOMAIN IN SMALL JRNL TITL 4 MOLECULE-MEDIATED REGULATION OF MTOR. JRNL REF ONCOGENE V. 27 585 2008 JRNL REFN ISSN 0950-9232 JRNL PMID 17684489 JRNL DOI 10.1038/SJ.ONC.1210693 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 3.1, CYANA REMARK 3 AUTHORS : GUNTERT (CYANA) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NPU COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 02-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040156. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.1 MM FRB DOMAIN U-15N,13C; REMARK 210 '25MM PHOSPHATE BUFFER; 90% H2O, REMARK 210 10% D2O; 0.1 MM FRB DOMAIN U-15N; REMARK 210 25MM PHOSPHATE BUFFER, 90% H2O, REMARK 210 10% D2O; 0.1 MM FRB DOMAIN U-15N, REMARK 210 13C WITH UNLABELLED AROMATICS; REMARK 210 25MM PHOSPHATE BUFFER, 90% H2O, REMARK 210 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, SPARKY REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 32 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 465 SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 MODELS 1-32 REMARK 465 RES C SSSEQI REMARK 465 MET A 1989 REMARK 465 SER A 1990 REMARK 465 TYR A 1991 REMARK 465 TYR A 1992 REMARK 465 HIS A 1993 REMARK 465 HIS A 1994 REMARK 465 HIS A 1995 REMARK 465 HIS A 1996 REMARK 465 HIS A 1997 REMARK 465 HIS A 1998 REMARK 465 ASP A 1999 REMARK 465 TYR A 2000 REMARK 465 ASP A 2001 REMARK 465 ILE A 2002 REMARK 465 PRO A 2003 REMARK 465 THR A 2004 REMARK 465 THR A 2005 REMARK 465 GLU A 2006 REMARK 465 ASN A 2007 REMARK 465 LEU A 2008 REMARK 465 TYR A 2009 REMARK 465 PHE A 2010 REMARK 465 GLN A 2011 REMARK 465 GLY A 2012 REMARK 465 ALA A 2013 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU A 2051 H HIS A 2055 1.45 REMARK 500 O PRO A 2053 H MET A 2057 1.48 REMARK 500 O ARG A 2109 H LYS A 2113 1.53 REMARK 500 O TYR A 2104 H PHE A 2108 1.53 REMARK 500 O VAL A 2094 H THR A 2098 1.54 REMARK 500 O LEU A 2078 H GLN A 2082 1.57 REMARK 500 O LEU A 2031 H SER A 2035 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A2042 37.74 35.96 REMARK 500 1 PRO A2062 -161.65 -75.03 REMARK 500 1 GLN A2063 -78.07 -143.63 REMARK 500 2 LEU A2016 -142.98 -102.99 REMARK 500 2 ILE A2017 138.53 -33.23 REMARK 500 2 ARG A2018 138.91 -174.84 REMARK 500 2 LEU A2022 148.58 -178.54 REMARK 500 2 GLU A2041 -166.40 -112.26 REMARK 500 2 PRO A2062 -161.15 -75.00 REMARK 500 2 GLN A2063 -74.76 -142.86 REMARK 500 2 SER A2091 61.07 177.03 REMARK 500 2 LYS A2113 -30.03 -39.99 REMARK 500 3 LEU A2016 -161.15 -179.90 REMARK 500 3 ILE A2017 -86.42 -46.72 REMARK 500 3 ARG A2018 73.68 -100.25 REMARK 500 3 LEU A2022 -159.98 -166.35 REMARK 500 3 ARG A2042 39.41 33.64 REMARK 500 3 PRO A2062 -161.98 -75.02 REMARK 500 3 GLN A2063 -64.55 -143.62 REMARK 500 3 SER A2091 55.43 -160.96 REMARK 500 3 ASN A2093 81.56 162.14 REMARK 500 4 LEU A2016 118.60 60.97 REMARK 500 4 ILE A2017 175.39 -56.25 REMARK 500 4 LEU A2022 -170.41 179.77 REMARK 500 4 ARG A2042 36.78 -99.58 REMARK 500 4 PRO A2062 -161.88 -75.01 REMARK 500 4 GLN A2063 -84.23 -144.54 REMARK 500 4 SER A2091 66.77 177.37 REMARK 500 5 ILE A2017 138.61 62.09 REMARK 500 5 LEU A2022 -158.98 -179.72 REMARK 500 5 GLU A2041 -162.89 -128.51 REMARK 500 5 PRO A2062 -161.73 -75.07 REMARK 500 5 GLN A2063 -78.12 -143.49 REMARK 500 5 SER A2091 66.51 177.59 REMARK 500 5 LYS A2113 123.77 -39.91 REMARK 500 6 LEU A2016 72.59 67.42 REMARK 500 6 ILE A2017 133.00 -39.71 REMARK 500 6 LEU A2022 149.64 179.12 REMARK 500 6 ASN A2043 77.15 -110.04 REMARK 500 6 PRO A2062 -161.57 -74.95 REMARK 500 6 GLN A2063 -62.67 -133.75 REMARK 500 6 SER A2091 -47.25 -147.77 REMARK 500 7 LEU A2016 170.73 78.38 REMARK 500 7 ILE A2017 -93.69 65.07 REMARK 500 7 ARG A2018 -166.93 -58.52 REMARK 500 7 PRO A2062 -161.77 -74.91 REMARK 500 7 GLN A2063 -75.92 -143.36 REMARK 500 8 PRO A2020 -82.27 -74.83 REMARK 500 8 ILE A2021 81.46 -59.68 REMARK 500 8 LEU A2022 -159.28 -166.79 REMARK 500 REMARK 500 THIS ENTRY HAS 214 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 6760 RELATED DB: BMRB DBREF 2NPU A 2015 2114 UNP P42345 FRAP_HUMAN 2015 2114 SEQADV 2NPU MET A 1989 UNP P42345 EXPRESSION TAG SEQADV 2NPU SER A 1990 UNP P42345 EXPRESSION TAG SEQADV 2NPU TYR A 1991 UNP P42345 EXPRESSION TAG SEQADV 2NPU TYR A 1992 UNP P42345 EXPRESSION TAG SEQADV 2NPU HIS A 1993 UNP P42345 EXPRESSION TAG SEQADV 2NPU HIS A 1994 UNP P42345 EXPRESSION TAG SEQADV 2NPU HIS A 1995 UNP P42345 EXPRESSION TAG SEQADV 2NPU HIS A 1996 UNP P42345 EXPRESSION TAG SEQADV 2NPU HIS A 1997 UNP P42345 EXPRESSION TAG SEQADV 2NPU HIS A 1998 UNP P42345 EXPRESSION TAG SEQADV 2NPU ASP A 1999 UNP P42345 LINKER SEQADV 2NPU TYR A 2000 UNP P42345 LINKER SEQADV 2NPU ASP A 2001 UNP P42345 LINKER SEQADV 2NPU ILE A 2002 UNP P42345 LINKER SEQADV 2NPU PRO A 2003 UNP P42345 LINKER SEQADV 2NPU THR A 2004 UNP P42345 LINKER SEQADV 2NPU THR A 2005 UNP P42345 LINKER SEQADV 2NPU GLU A 2006 UNP P42345 LINKER SEQADV 2NPU ASN A 2007 UNP P42345 LINKER SEQADV 2NPU LEU A 2008 UNP P42345 LINKER SEQADV 2NPU TYR A 2009 UNP P42345 LINKER SEQADV 2NPU PHE A 2010 UNP P42345 LINKER SEQADV 2NPU GLN A 2011 UNP P42345 LINKER SEQADV 2NPU GLY A 2012 UNP P42345 LINKER SEQADV 2NPU ALA A 2013 UNP P42345 LINKER SEQADV 2NPU MET A 2014 UNP P42345 LINKER SEQADV 2NPU PRO A 2020 UNP P42345 ALA 2020 ENGINEERED MUTATION SEQRES 1 A 126 MET SER TYR TYR HIS HIS HIS HIS HIS HIS ASP TYR ASP SEQRES 2 A 126 ILE PRO THR THR GLU ASN LEU TYR PHE GLN GLY ALA MET SEQRES 3 A 126 GLU LEU ILE ARG VAL PRO ILE LEU TRP HIS GLU MET TRP SEQRES 4 A 126 HIS GLU GLY LEU GLU GLU ALA SER ARG LEU TYR PHE GLY SEQRES 5 A 126 GLU ARG ASN VAL LYS GLY MET PHE GLU VAL LEU GLU PRO SEQRES 6 A 126 LEU HIS ALA MET MET GLU ARG GLY PRO GLN THR LEU LYS SEQRES 7 A 126 GLU THR SER PHE ASN GLN ALA TYR GLY ARG ASP LEU MET SEQRES 8 A 126 GLU ALA GLN GLU TRP CYS ARG LYS TYR MET LYS SER GLY SEQRES 9 A 126 ASN VAL LYS ASP LEU THR GLN ALA TRP ASP LEU TYR TYR SEQRES 10 A 126 HIS VAL PHE ARG ARG ILE SER LYS GLN HELIX 1 1 LEU A 2022 GLU A 2041 1 20 HELIX 2 2 ASN A 2043 GLY A 2061 1 19 HELIX 3 3 THR A 2064 SER A 2091 1 28 HELIX 4 4 ASN A 2093 LYS A 2113 1 21 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1