data_2NPV # _entry.id 2NPV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.399 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2NPV pdb_00002npv 10.2210/pdb2npv/pdb RCSB RCSB040157 ? ? WWPDB D_1000040157 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-11-28 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-08-12 5 'Structure model' 2 1 2023-12-27 6 'Structure model' 2 2 2024-12-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' Advisory 4 4 'Structure model' 'Atomic model' 5 4 'Structure model' 'Data collection' 6 4 'Structure model' 'Derived calculations' 7 4 'Structure model' 'Structure summary' 8 5 'Structure model' 'Data collection' 9 5 'Structure model' 'Database references' 10 6 'Structure model' Advisory 11 6 'Structure model' 'Derived calculations' 12 6 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' database_PDB_caveat 3 4 'Structure model' pdbx_molecule_features 4 4 'Structure model' pdbx_nmr_software 5 4 'Structure model' pdbx_struct_assembly 6 4 'Structure model' pdbx_struct_assembly_prop 7 4 'Structure model' pdbx_struct_oper_list 8 4 'Structure model' struct_conn 9 4 'Structure model' struct_site 10 5 'Structure model' chem_comp_atom 11 5 'Structure model' chem_comp_bond 12 5 'Structure model' database_2 13 6 'Structure model' pdbx_entry_details 14 6 'Structure model' pdbx_validate_close_contact 15 6 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.auth_atom_id' 2 4 'Structure model' '_atom_site.label_atom_id' 3 4 'Structure model' '_pdbx_nmr_software.name' 4 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 5 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 6 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 7 4 'Structure model' '_struct_site.pdbx_auth_seq_id' 8 5 'Structure model' '_database_2.pdbx_DOI' 9 5 'Structure model' '_database_2.pdbx_database_accession' # _database_PDB_caveat.id 1 _database_PDB_caveat.text 'BFC A 1 HAS WRONG CHIRALITY AT ATOM CB' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2NPV _pdbx_database_status.recvd_initial_deposition_date 2006-10-30 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tsan, P.' 1 'Volpon, L.' 2 'Lancelin, J.M.' 3 # _citation.id primary _citation.title 'Structure and dynamics of surfactin studied by NMR in micellar media' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 129 _citation.page_first 1968 _citation.page_last 1977 _citation.year 2007 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17256853 _citation.pdbx_database_id_DOI 10.1021/ja066117q # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Tsan, P.' 1 ? primary 'Volpon, L.' 2 ? primary 'Besson, F.' 3 ? primary 'Lancelin, J.M.' 4 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat ELLVDLL 813.979 1 ? ? ? ;This biosurfactant is a cyclic lipopetide with seven amino-acids (Glu-Leu-Leu-Val-Asp-Leu-Leu) of configuration LLDLLDL and one beta-amino fatty acid. ; 2 non-polymer syn '(R)-3-HYDROXYTETRADECANAL' 228.371 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'EL(DLE)VD(DLE)L' _entity_poly.pdbx_seq_one_letter_code_can ELLVDLL _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name '(R)-3-HYDROXYTETRADECANAL' _pdbx_entity_nonpoly.comp_id BFC # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLU n 1 2 LEU n 1 3 DLE n 1 4 VAL n 1 5 ASP n 1 6 DLE n 1 7 LEU n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific 'Bacillus subtilis' _entity_src_nat.pdbx_ncbi_taxonomy_id 1423 _entity_src_nat.genus ? _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ;This peptide that contained amino acids with configuration d was purified from bacteria. For such peptides, the bacteria are using multienzymatic systems that racemize amino acid and catalyze the formation of peptidic bond, as for the synthesis of peptidoglycans for example. ; # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BFC non-polymer . '(R)-3-HYDROXYTETRADECANAL' ? 'C14 H28 O2' 228.371 DLE 'D-peptide linking' . D-LEUCINE ? 'C6 H13 N O2' 131.173 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLU 1 2 2 GLU GLU A . n A 1 2 LEU 2 3 3 LEU LEU A . n A 1 3 DLE 3 4 4 DLE DLE A . n A 1 4 VAL 4 5 5 VAL VAL A . n A 1 5 ASP 5 6 6 ASP ASP A . n A 1 6 DLE 6 7 7 DLE DLE A . n A 1 7 LEU 7 8 8 LEU LEU A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id BFC _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 1 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id BFC _pdbx_nonpoly_scheme.auth_mon_id BFC _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _cell.entry_id 2NPV _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 2NPV _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _exptl.entry_id 2NPV _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _database_PDB_matrix.entry_id 2NPV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 2NPV _struct.title 'Structure and dynamics of surfactin studied by NMR in micellar media' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2NPV _struct_keywords.pdbx_keywords 'SURFACE ACTIVE PROTEIN' _struct_keywords.text 'biosurfactant, cyclic lipopeptide, surfactin, SDS micelles, SURFACE ACTIVE PROTEIN' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 2NPV _struct_ref.pdbx_db_accession 2NPV _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ELLVDLL _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2NPV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 7 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2NPV _struct_ref_seq.db_align_beg 2 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 8 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 2 _struct_ref_seq.pdbx_auth_seq_align_end 8 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 330 ? 1 MORE -3 ? 1 'SSA (A^2)' 1090 ? # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A LEU 2 C ? ? ? 1_555 A DLE 3 N ? ? A LEU 3 A DLE 4 1_555 ? ? ? ? ? ? ? 1.344 ? ? covale2 covale both ? A DLE 3 C ? ? ? 1_555 A VAL 4 N ? ? A DLE 4 A VAL 5 1_555 ? ? ? ? ? ? ? 1.349 ? ? covale3 covale both ? A ASP 5 C ? ? ? 1_555 A DLE 6 N ? ? A ASP 6 A DLE 7 1_555 ? ? ? ? ? ? ? 1.347 ? ? covale4 covale both ? A DLE 6 C ? ? ? 1_555 A LEU 7 N ? ? A DLE 7 A LEU 8 1_555 ? ? ? ? ? ? ? 1.347 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id BFC _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 3 _struct_site.details 'BINDING SITE FOR RESIDUE BFC A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 GLU A 1 ? GLU A 2 . ? 1_555 ? 2 AC1 3 LEU A 2 ? LEU A 3 . ? 1_555 ? 3 AC1 3 LEU A 7 ? LEU A 8 . ? 1_555 ? # _pdbx_entry_details.entry_id 2NPV _pdbx_entry_details.compound_details ? _pdbx_entry_details.source_details ? _pdbx_entry_details.nonpolymer_details ? _pdbx_entry_details.sequence_details ? _pdbx_entry_details.has_ligand_of_interest ? _pdbx_entry_details.has_protein_modification N # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 C A LEU 8 ? ? OB A BFC 1 ? ? 1.28 2 1 N A GLU 2 ? ? C A BFC 1 ? ? 1.36 3 2 C A LEU 8 ? ? OB A BFC 1 ? ? 1.28 4 2 N A GLU 2 ? ? C A BFC 1 ? ? 1.35 5 3 C A LEU 8 ? ? OB A BFC 1 ? ? 1.28 6 3 N A GLU 2 ? ? C A BFC 1 ? ? 1.35 7 4 C A LEU 8 ? ? OB A BFC 1 ? ? 1.29 8 4 N A GLU 2 ? ? C A BFC 1 ? ? 1.34 9 5 C A LEU 8 ? ? OB A BFC 1 ? ? 1.30 10 5 N A GLU 2 ? ? C A BFC 1 ? ? 1.34 11 6 C A LEU 8 ? ? OB A BFC 1 ? ? 1.28 12 6 N A GLU 2 ? ? C A BFC 1 ? ? 1.35 13 7 C A LEU 8 ? ? OB A BFC 1 ? ? 1.28 14 7 N A GLU 2 ? ? C A BFC 1 ? ? 1.35 15 8 C A LEU 8 ? ? OB A BFC 1 ? ? 1.28 16 8 N A GLU 2 ? ? C A BFC 1 ? ? 1.35 17 9 C A LEU 8 ? ? OB A BFC 1 ? ? 1.29 18 9 N A GLU 2 ? ? C A BFC 1 ? ? 1.35 19 10 C A LEU 8 ? ? OB A BFC 1 ? ? 1.29 20 10 N A GLU 2 ? ? C A BFC 1 ? ? 1.34 21 11 C A LEU 8 ? ? OB A BFC 1 ? ? 1.28 22 11 N A GLU 2 ? ? C A BFC 1 ? ? 1.35 23 12 C A LEU 8 ? ? OB A BFC 1 ? ? 1.29 24 12 N A GLU 2 ? ? C A BFC 1 ? ? 1.34 25 13 C A LEU 8 ? ? OB A BFC 1 ? ? 1.28 26 13 N A GLU 2 ? ? C A BFC 1 ? ? 1.35 27 14 C A LEU 8 ? ? OB A BFC 1 ? ? 1.28 28 14 N A GLU 2 ? ? C A BFC 1 ? ? 1.35 29 15 C A LEU 8 ? ? OB A BFC 1 ? ? 1.27 30 15 N A GLU 2 ? ? C A BFC 1 ? ? 1.35 31 16 C A LEU 8 ? ? OB A BFC 1 ? ? 1.28 32 16 N A GLU 2 ? ? C A BFC 1 ? ? 1.34 33 17 C A LEU 8 ? ? OB A BFC 1 ? ? 1.28 34 17 N A GLU 2 ? ? C A BFC 1 ? ? 1.35 35 18 C A LEU 8 ? ? OB A BFC 1 ? ? 1.28 36 18 N A GLU 2 ? ? C A BFC 1 ? ? 1.35 37 19 C A LEU 8 ? ? OB A BFC 1 ? ? 1.27 38 19 N A GLU 2 ? ? C A BFC 1 ? ? 1.34 39 20 C A LEU 8 ? ? OB A BFC 1 ? ? 1.28 40 20 N A GLU 2 ? ? C A BFC 1 ? ? 1.35 41 21 C A LEU 8 ? ? OB A BFC 1 ? ? 1.28 42 21 N A GLU 2 ? ? C A BFC 1 ? ? 1.35 43 22 C A LEU 8 ? ? OB A BFC 1 ? ? 1.29 44 22 N A GLU 2 ? ? C A BFC 1 ? ? 1.35 45 23 C A LEU 8 ? ? OB A BFC 1 ? ? 1.28 46 23 N A GLU 2 ? ? C A BFC 1 ? ? 1.34 47 24 C A LEU 8 ? ? OB A BFC 1 ? ? 1.28 48 24 N A GLU 2 ? ? C A BFC 1 ? ? 1.35 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 VAL A 5 ? ? -89.99 -70.36 2 3 DLE A 4 ? ? 95.74 -51.56 3 6 DLE A 4 ? ? 116.44 -53.35 4 6 VAL A 5 ? ? -90.08 -61.75 5 7 DLE A 4 ? ? 96.33 -58.60 6 7 DLE A 7 ? ? 95.95 -53.41 7 8 DLE A 4 ? ? 115.74 -51.58 8 8 VAL A 5 ? ? -90.29 -61.96 9 9 DLE A 4 ? ? 96.59 -57.25 10 11 DLE A 4 ? ? 117.75 -53.57 11 11 VAL A 5 ? ? -90.27 -67.23 12 13 DLE A 4 ? ? 101.40 -57.29 13 13 VAL A 5 ? ? -90.04 -61.66 14 13 DLE A 7 ? ? 92.46 -57.90 15 14 DLE A 4 ? ? 108.09 -51.74 16 15 DLE A 4 ? ? 105.95 -43.47 17 15 ASP A 6 ? ? -97.62 -61.20 18 16 DLE A 4 ? ? 101.92 -56.74 19 17 DLE A 4 ? ? 96.70 -44.27 20 18 VAL A 5 ? ? -90.30 -64.34 21 19 DLE A 4 ? ? 114.02 -50.35 22 19 VAL A 5 ? ? -90.22 -62.43 23 20 DLE A 4 ? ? 116.55 -52.94 24 20 VAL A 5 ? ? -90.30 -66.08 25 21 DLE A 4 ? ? 92.90 -51.19 26 23 VAL A 5 ? ? -90.43 -63.18 27 24 DLE A 4 ? ? 111.71 -50.98 28 24 VAL A 5 ? ? -90.16 -62.30 29 24 DLE A 7 ? ? 100.49 -56.55 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 2 CB ? A BFC 1 ? 'WRONG HAND' . 2 13 CB ? A BFC 1 ? 'WRONG HAND' . 3 14 CB ? A BFC 1 ? 'WRONG HAND' . 4 17 CB ? A BFC 1 ? 'WRONG HAND' . 5 20 CB ? A BFC 1 ? 'WRONG HAND' . 6 21 CB ? A BFC 1 ? 'WRONG HAND' . 7 23 CB ? A BFC 1 ? 'WRONG HAND' . 8 24 CB ? A BFC 1 ? 'WRONG HAND' . # _pdbx_molecule_features.prd_id PRD_000185 _pdbx_molecule_features.name 'SURFACTIN nC15' _pdbx_molecule_features.type Lipopeptide _pdbx_molecule_features.class Antibiotic _pdbx_molecule_features.details ? # _pdbx_molecule.instance_id 1 _pdbx_molecule.prd_id PRD_000185 _pdbx_molecule.asym_id B # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A DLE 3 A DLE 4 ? LEU D-LEUCINE 2 A DLE 6 A DLE 7 ? LEU D-LEUCINE # _pdbx_nmr_ensemble.entry_id 2NPV _pdbx_nmr_ensemble.conformers_calculated_total_number 50 _pdbx_nmr_ensemble.conformers_submitted_total_number 24 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the least restraint violations, structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 2NPV _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'closest to the average' # _pdbx_nmr_sample_details.solution_id 1 _pdbx_nmr_sample_details.contents '4mM surfactin in 90% H2O, 10% D2O (pH 5.1); 50mM SDS-d25' _pdbx_nmr_sample_details.solvent_system '90% H2O/10% D2O' # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 298 _pdbx_nmr_exptl_sample_conditions.pressure ambient _pdbx_nmr_exptl_sample_conditions.pH 5.1 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units . _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 DQF-COSY 1 2 1 '2D TOCSY' 1 3 1 '2D NOESY' 1 # _pdbx_nmr_details.entry_id 2NPV _pdbx_nmr_details.text 'This structure was determined using standard 2D homonuclear techniques' # _pdbx_nmr_refine.entry_id 2NPV _pdbx_nmr_refine.method 'distance geometry, simulated annealing' _pdbx_nmr_refine.details ;the structures are based on a total of 49 restraints, 47 are NOE-derived distance constraints and 2 are dihedral angle restraints ; _pdbx_nmr_refine.software_ordinal 1 # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal processing X-PLOR 3.851 ? 1 refinement CHARMM 22 ? 2 'data analysis' Gifa 4.0 'Marc-Andre Delsuc' 3 'data analysis' MOLMOL ? ? 4 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal ASP N N N N 1 ASP CA C N S 2 ASP C C N N 3 ASP O O N N 4 ASP CB C N N 5 ASP CG C N N 6 ASP OD1 O N N 7 ASP OD2 O N N 8 ASP OXT O N N 9 ASP H H N N 10 ASP H2 H N N 11 ASP HA H N N 12 ASP HB2 H N N 13 ASP HB3 H N N 14 ASP HD2 H N N 15 ASP HXT H N N 16 BFC C C N N 17 BFC O O N N 18 BFC CA C N N 19 BFC CB C N R 20 BFC OB O N N 21 BFC CC C N N 22 BFC CD C N N 23 BFC CE C N N 24 BFC CF C N N 25 BFC CG C N N 26 BFC CH C N N 27 BFC CI C N N 28 BFC CJ C N N 29 BFC CK C N N 30 BFC CL C N N 31 BFC CM C N N 32 BFC H H N N 33 BFC HA1 H N N 34 BFC HA2 H N N 35 BFC HB H N N 36 BFC HOB H N N 37 BFC HC1 H N N 38 BFC HC2 H N N 39 BFC HD1 H N N 40 BFC HD2 H N N 41 BFC HE1 H N N 42 BFC HE2 H N N 43 BFC HF1 H N N 44 BFC HF2 H N N 45 BFC HG1 H N N 46 BFC HG2 H N N 47 BFC HH1 H N N 48 BFC HH2 H N N 49 BFC HI1 H N N 50 BFC HI2 H N N 51 BFC HJ1 H N N 52 BFC HJ2 H N N 53 BFC HK1 H N N 54 BFC HK2 H N N 55 BFC HL1 H N N 56 BFC HL2 H N N 57 BFC HM1 H N N 58 BFC HM2 H N N 59 BFC HM3 H N N 60 DLE N N N N 61 DLE CA C N R 62 DLE CB C N N 63 DLE CG C N N 64 DLE CD1 C N N 65 DLE CD2 C N N 66 DLE C C N N 67 DLE O O N N 68 DLE OXT O N N 69 DLE H H N N 70 DLE H2 H N N 71 DLE HA H N N 72 DLE HB2 H N N 73 DLE HB3 H N N 74 DLE HG H N N 75 DLE HD11 H N N 76 DLE HD12 H N N 77 DLE HD13 H N N 78 DLE HD21 H N N 79 DLE HD22 H N N 80 DLE HD23 H N N 81 DLE HXT H N N 82 GLU N N N N 83 GLU CA C N S 84 GLU C C N N 85 GLU O O N N 86 GLU CB C N N 87 GLU CG C N N 88 GLU CD C N N 89 GLU OE1 O N N 90 GLU OE2 O N N 91 GLU OXT O N N 92 GLU H H N N 93 GLU H2 H N N 94 GLU HA H N N 95 GLU HB2 H N N 96 GLU HB3 H N N 97 GLU HG2 H N N 98 GLU HG3 H N N 99 GLU HE2 H N N 100 GLU HXT H N N 101 LEU N N N N 102 LEU CA C N S 103 LEU C C N N 104 LEU O O N N 105 LEU CB C N N 106 LEU CG C N N 107 LEU CD1 C N N 108 LEU CD2 C N N 109 LEU OXT O N N 110 LEU H H N N 111 LEU H2 H N N 112 LEU HA H N N 113 LEU HB2 H N N 114 LEU HB3 H N N 115 LEU HG H N N 116 LEU HD11 H N N 117 LEU HD12 H N N 118 LEU HD13 H N N 119 LEU HD21 H N N 120 LEU HD22 H N N 121 LEU HD23 H N N 122 LEU HXT H N N 123 VAL N N N N 124 VAL CA C N S 125 VAL C C N N 126 VAL O O N N 127 VAL CB C N N 128 VAL CG1 C N N 129 VAL CG2 C N N 130 VAL OXT O N N 131 VAL H H N N 132 VAL H2 H N N 133 VAL HA H N N 134 VAL HB H N N 135 VAL HG11 H N N 136 VAL HG12 H N N 137 VAL HG13 H N N 138 VAL HG21 H N N 139 VAL HG22 H N N 140 VAL HG23 H N N 141 VAL HXT H N N 142 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ASP N CA sing N N 1 ASP N H sing N N 2 ASP N H2 sing N N 3 ASP CA C sing N N 4 ASP CA CB sing N N 5 ASP CA HA sing N N 6 ASP C O doub N N 7 ASP C OXT sing N N 8 ASP CB CG sing N N 9 ASP CB HB2 sing N N 10 ASP CB HB3 sing N N 11 ASP CG OD1 doub N N 12 ASP CG OD2 sing N N 13 ASP OD2 HD2 sing N N 14 ASP OXT HXT sing N N 15 BFC C CA sing N N 16 BFC C O doub N N 17 BFC C H sing N N 18 BFC CA CB sing N N 19 BFC CA HA1 sing N N 20 BFC CA HA2 sing N N 21 BFC CB OB sing N N 22 BFC CB CC sing N N 23 BFC CB HB sing N N 24 BFC OB HOB sing N N 25 BFC CC CD sing N N 26 BFC CC HC1 sing N N 27 BFC CC HC2 sing N N 28 BFC CD CE sing N N 29 BFC CD HD1 sing N N 30 BFC CD HD2 sing N N 31 BFC CE CF sing N N 32 BFC CE HE1 sing N N 33 BFC CE HE2 sing N N 34 BFC CF CG sing N N 35 BFC CF HF1 sing N N 36 BFC CF HF2 sing N N 37 BFC CG CH sing N N 38 BFC CG HG1 sing N N 39 BFC CG HG2 sing N N 40 BFC CH CI sing N N 41 BFC CH HH1 sing N N 42 BFC CH HH2 sing N N 43 BFC CI CJ sing N N 44 BFC CI HI1 sing N N 45 BFC CI HI2 sing N N 46 BFC CJ CK sing N N 47 BFC CJ HJ1 sing N N 48 BFC CJ HJ2 sing N N 49 BFC CK CL sing N N 50 BFC CK HK1 sing N N 51 BFC CK HK2 sing N N 52 BFC CL CM sing N N 53 BFC CL HL1 sing N N 54 BFC CL HL2 sing N N 55 BFC CM HM1 sing N N 56 BFC CM HM2 sing N N 57 BFC CM HM3 sing N N 58 DLE N CA sing N N 59 DLE N H sing N N 60 DLE N H2 sing N N 61 DLE CA CB sing N N 62 DLE CA C sing N N 63 DLE CA HA sing N N 64 DLE CB CG sing N N 65 DLE CB HB2 sing N N 66 DLE CB HB3 sing N N 67 DLE CG CD1 sing N N 68 DLE CG CD2 sing N N 69 DLE CG HG sing N N 70 DLE CD1 HD11 sing N N 71 DLE CD1 HD12 sing N N 72 DLE CD1 HD13 sing N N 73 DLE CD2 HD21 sing N N 74 DLE CD2 HD22 sing N N 75 DLE CD2 HD23 sing N N 76 DLE C O doub N N 77 DLE C OXT sing N N 78 DLE OXT HXT sing N N 79 GLU N CA sing N N 80 GLU N H sing N N 81 GLU N H2 sing N N 82 GLU CA C sing N N 83 GLU CA CB sing N N 84 GLU CA HA sing N N 85 GLU C O doub N N 86 GLU C OXT sing N N 87 GLU CB CG sing N N 88 GLU CB HB2 sing N N 89 GLU CB HB3 sing N N 90 GLU CG CD sing N N 91 GLU CG HG2 sing N N 92 GLU CG HG3 sing N N 93 GLU CD OE1 doub N N 94 GLU CD OE2 sing N N 95 GLU OE2 HE2 sing N N 96 GLU OXT HXT sing N N 97 LEU N CA sing N N 98 LEU N H sing N N 99 LEU N H2 sing N N 100 LEU CA C sing N N 101 LEU CA CB sing N N 102 LEU CA HA sing N N 103 LEU C O doub N N 104 LEU C OXT sing N N 105 LEU CB CG sing N N 106 LEU CB HB2 sing N N 107 LEU CB HB3 sing N N 108 LEU CG CD1 sing N N 109 LEU CG CD2 sing N N 110 LEU CG HG sing N N 111 LEU CD1 HD11 sing N N 112 LEU CD1 HD12 sing N N 113 LEU CD1 HD13 sing N N 114 LEU CD2 HD21 sing N N 115 LEU CD2 HD22 sing N N 116 LEU CD2 HD23 sing N N 117 LEU OXT HXT sing N N 118 VAL N CA sing N N 119 VAL N H sing N N 120 VAL N H2 sing N N 121 VAL CA C sing N N 122 VAL CA CB sing N N 123 VAL CA HA sing N N 124 VAL C O doub N N 125 VAL C OXT sing N N 126 VAL CB CG1 sing N N 127 VAL CB CG2 sing N N 128 VAL CB HB sing N N 129 VAL CG1 HG11 sing N N 130 VAL CG1 HG12 sing N N 131 VAL CG1 HG13 sing N N 132 VAL CG2 HG21 sing N N 133 VAL CG2 HG22 sing N N 134 VAL CG2 HG23 sing N N 135 VAL OXT HXT sing N N 136 # _pdbx_nmr_spectrometer.spectrometer_id 1 _pdbx_nmr_spectrometer.model DRX _pdbx_nmr_spectrometer.manufacturer Bruker _pdbx_nmr_spectrometer.field_strength 500 _pdbx_nmr_spectrometer.type ? # _atom_sites.entry_id 2NPV _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O # loop_