HEADER DNA 30-OCT-06 2NPW TITLE SOLUTION STRUCTURES OF A DNA DODECAMER DUPLEX WITH A CISPLATIN 1,2- TITLE 2 D(GG) INTRASTRAND CROSS-LINK COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*CP*TP*CP*AP*GP*GP*CP*CP*TP*CP*C)-3'; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: 5'-D(*GP*GP*AP*GP*GP*CP*CP*TP*GP*AP*GP*G)-3'; COMPND 7 CHAIN: B; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 4 ORGANISM_TAXID: 32630; SOURCE 5 MOL_ID: 2; SOURCE 6 SYNTHETIC: YES; SOURCE 7 ORGANISM_SCIENTIFIC: SYNTHETIC CONSTRUCT; SOURCE 8 ORGANISM_TAXID: 32630 KEYWDS DEOXYRIBONUCLEIC ACID, CISPLATIN, DNA, DUPLEX, DODECAMER EXPDTA SOLUTION NMR MDLTYP MINIMIZED AVERAGE AUTHOR Y.WU,D.BHATTACHARYYA,S.CHANEY,S.CAMPBELL REVDAT 6 27-DEC-23 2NPW 1 REMARK REVDAT 5 24-JUN-20 2NPW 1 SOURCE DBREF REVDAT 4 13-JUL-11 2NPW 1 VERSN REVDAT 3 23-JUN-10 2NPW 1 FORMUL REVDAT 2 24-FEB-09 2NPW 1 VERSN REVDAT 1 12-JUN-07 2NPW 0 JRNL AUTH Y.WU,D.BHATTACHARYYA,C.L.KING,I.BASKERVILLE-ABRAHAM, JRNL AUTH 2 S.-H.HUH,G.BOYSEN,J.A.SWENBERG,B.TEMPLE,S.L.CAMPBELL, JRNL AUTH 3 S.G.CHANEY JRNL TITL SOLUTION STRUCTURES OF A DNA DODECAMER DUPLEX WITH AND JRNL TITL 2 WITHOUT A CISPLATIN 1,2-D(GG) INTRASTRAND CROSS-LINK: JRNL TITL 3 COMPARISON WITH THE SAME DNA DUPLEX CONTAINING AN JRNL TITL 4 OXALIPLATIN 1,2-D(GG) INTRASTRAND CROSS-LINK JRNL REF BIOCHEMISTRY V. 46 6477 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17497831 JRNL DOI 10.1021/BI062291F REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1, CNS 1.1 REMARK 3 AUTHORS : BRUNGER (CNS), BRUNGER (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NPW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040158. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM NACL, 5MM NAPI REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.8 MM DNA, 100 MM NACL, 5 MM REMARK 210 PHOSPHATE BUFFER, PH 7.0, 95% REMARK 210 H2O, 5% D2O; 1.8 MM DNA, 100 MM REMARK 210 NACL, 5 MM PHOSPHATE BUFFER, PH REMARK 210 7.0, 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 2D TOCSY; DQF-COSY; 2D REMARK 210 1H 31P HETCOR REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 800 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 1 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 H21 DG A 7 O2 DC B 18 1.45 REMARK 500 O2 DC A 12 H21 DG B 13 1.52 REMARK 500 O2 DC A 2 H21 DG B 23 1.54 REMARK 500 O2 DC A 1 H21 DG B 24 1.56 REMARK 500 H21 DG A 6 O2 DC B 19 1.58 REMARK 500 O2 DC A 11 H21 DG B 14 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CPT A 77 PT1 REMARK 620 N RES CSSEQI ATOM REMARK 620 1 DG A 6 N7 REMARK 620 2 CPT A 77 N1 90.6 REMARK 620 3 CPT A 77 N2 179.4 88.8 REMARK 620 4 DG A 7 N7 90.1 179.2 90.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CPT A 77 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NQ0 RELATED DB: PDB REMARK 900 RELATED ID: 2NQ1 RELATED DB: PDB REMARK 900 RELATED ID: 2NQ4 RELATED DB: PDB DBREF 2NPW A 1 12 PDB 2NPW 2NPW 1 12 DBREF 2NPW B 13 24 PDB 2NPW 2NPW 13 24 SEQRES 1 A 12 DC DC DT DC DA DG DG DC DC DT DC DC SEQRES 1 B 12 DG DG DA DG DG DC DC DT DG DA DG DG HET CPT A 77 9 HETNAM CPT CISPLATIN HETSYN CPT DIAMMINE(DICHLORO)PLATINUM FORMUL 3 CPT CL2 H6 N2 PT LINK N7 DG A 6 PT1 CPT A 77 1555 1555 2.01 LINK N7 DG A 7 PT1 CPT A 77 1555 1555 2.01 SITE 1 AC1 3 DA A 5 DG A 6 DG A 7 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000