HEADER OXIDOREDUCTASE (NITRIC OXIDE(A)) 03-JUL-95 2NRD TITLE THE STRUCTURE OF CU-NITRITE REDUCTASE FROM ACHROMOBACTER CYCLOCLASTES TITLE 2 AT FIVE PH VALUES, WITH NITRITE BOUND AND WITH TYPE II CU DEPLETED COMPND MOL_ID: 1; COMPND 2 MOLECULE: NITRITE REDUCTASE; COMPND 3 CHAIN: A; COMPND 4 EC: 1.7.99.3; COMPND 5 OTHER_DETAILS: PH 5.4 ("HR") SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACHROMOBACTER CYCLOCLASTES; SOURCE 3 ORGANISM_TAXID: 223 KEYWDS OXIDOREDUCTASE (NITRIC OXIDE(A)) EXPDTA X-RAY DIFFRACTION AUTHOR E.T.ADMAN,J.W.GODDEN,S.TURLEY REVDAT 5 21-FEB-24 2NRD 1 REMARK LINK REVDAT 4 13-JUL-11 2NRD 1 VERSN REVDAT 3 24-FEB-09 2NRD 1 VERSN REVDAT 2 01-APR-03 2NRD 1 JRNL REVDAT 1 07-DEC-95 2NRD 0 SPRSDE 07-DEC-95 2NRD 1NRD JRNL AUTH E.T.ADMAN,J.W.GODDEN,S.TURLEY JRNL TITL THE STRUCTURE OF COPPER-NITRITE REDUCTASE FROM ACHROMOBACTER JRNL TITL 2 CYCLOCLASTES AT FIVE PH VALUES, WITH NO2- BOUND AND WITH JRNL TITL 3 TYPE II COPPER DEPLETED. JRNL REF J.BIOL.CHEM. V. 270 27458 1995 JRNL REFN ISSN 0021-9258 JRNL PMID 7499203 JRNL DOI 10.1074/JBC.270.46.27458 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.W.GODDEN,S.TURLEY,D.C.TELLER,E.T.ADMAN,M.Y.LIU,W.J.PAYNE, REMARK 1 AUTH 2 J.LEGALL REMARK 1 TITL THE 2.3 ANGSTROM X-RAY STRUCTURE OF NITRITE REDUCTASE FROM REMARK 1 TITL 2 ACHROMOBACTER CYCLOCLASTES REMARK 1 REF SCIENCE V. 253 438 1991 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 2 REMARK 1 AUTH F.F.FENDERSON,S.KUMAR,E.T.ADMAN,M.-Y.LIU,W.J.PAYNE,J.LEGALL REMARK 1 TITL AMINO ACID SEQUENCE OF NITRITE REDUCTASE: A COPPER PROTEIN REMARK 1 TITL 2 FROM ACHROMOBACTER CYCLOCLASTES REMARK 1 REF BIOCHEMISTRY V. 30 7180 1991 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.TURLEY,E.T.ADMAN,L.C.SIEKER,M.-Y.LIU,W.J.PAYNE,J.LEGALL REMARK 1 TITL CRYSTALLIZATION OF NITRITE REDUCTASE FROM ACHROMOBACTER REMARK 1 TITL 2 CYCLOCLASTES REMARK 1 REF J.MOL.BIOL. V. 200 417 1988 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.0 REMARK 3 NUMBER OF REFLECTIONS : 17058 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2575 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 187 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.013 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HIS 306 HAS SOMEWHAT DISTORTED REMARK 3 GEOMETRY. REMARK 4 REMARK 4 2NRD COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000178414. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : SIEMENS-NICOLET X100 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : VARIOUS REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17159 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.08 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.4 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 49.06500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.06500 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.06500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.06500 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 49.06500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.06500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 49.06500 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 49.06500 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 49.06500 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 49.06500 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 49.06500 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 49.06500 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 49.06500 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 49.06500 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 49.06500 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 49.06500 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 49.06500 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 49.06500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 13180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 33920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -97.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A5044 LIES ON A SPECIAL POSITION. REMARK 375 HOH A5045 LIES ON A SPECIAL POSITION. REMARK 375 HOH A5046 LIES ON A SPECIAL POSITION. REMARK 375 HOH A5047 LIES ON A SPECIAL POSITION. REMARK 375 HOH A5048 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ALA A 2 REMARK 465 GLY A 3 REMARK 465 ALA A 4 REMARK 465 ALA A 5 REMARK 465 PRO A 6 REMARK 465 VAL A 7 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ARG A 54 NH1 REMARK 480 GLU A 139 CB CG CD OE1 OE2 REMARK 480 GLN A 168 CG CD OE1 NE2 REMARK 480 LYS A 208 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HD22 ASN A 192 O HOH A 1188 1.06 REMARK 500 HD22 ASN A 221 O HOH A 1221 1.16 REMARK 500 O HOH A 2282 O HOH A 6275 1.32 REMARK 500 OG1 THR A 44 O HOH A 1044 1.44 REMARK 500 O HOH A 1267 O HOH A 4267 1.77 REMARK 500 O HOH A 1278 O HOH A 2278 1.84 REMARK 500 OD2 ASP A 188 O HOH A 1188 1.88 REMARK 500 ND2 ASN A 192 O HOH A 1188 1.92 REMARK 500 ND2 ASN A 221 O HOH A 1221 2.05 REMARK 500 O HOH A 1213 O HOH A 1214 2.06 REMARK 500 O HOH A 3267 O HOH A 4267 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O LEU A 12 O HOH A 2159 11545 1.95 REMARK 500 OG1 THR A 267 O HOH A 1278 9555 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 54 NE ARG A 54 CZ -0.085 REMARK 500 GLU A 165 CD GLU A 165 OE2 0.076 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 54 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 ASN A 307 N - CA - C ANGL. DEV. = -18.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 78 8.50 80.56 REMARK 500 ALA A 137 70.92 -155.18 REMARK 500 LEU A 227 43.32 -107.97 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 95 ND1 REMARK 620 2 CYS A 136 SG 134.3 REMARK 620 3 HIS A 145 ND1 99.0 102.8 REMARK 620 4 MET A 150 SD 87.7 107.9 129.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 100 NE2 REMARK 620 2 HIS A 135 NE2 104.2 REMARK 620 3 HIS A 306 NE2 108.0 111.1 REMARK 620 4 HOH A5031 O 102.1 115.7 114.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: CU1 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: TYPE I copper binding site REMARK 800 REMARK 800 SITE_IDENTIFIER: CU2 REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: TYPE II copper binding site REMARK 800 REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 502 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1NIA RELATED DB: PDB REMARK 900 PH 6.2 REMARK 900 RELATED ID: 1NIB RELATED DB: PDB REMARK 900 PH 6.8 REMARK 900 RELATED ID: 1NIC RELATED DB: PDB REMARK 900 PH 6.0 REMARK 900 RELATED ID: 1NID RELATED DB: PDB REMARK 900 PH 5.4 NITRITE SOAKED REMARK 900 RELATED ID: 1NIE RELATED DB: PDB REMARK 900 PH 5.0 REMARK 900 RELATED ID: 1NIF RELATED DB: PDB REMARK 900 PH 5.4 TYPE II COPPER DEPLETED REMARK 900 RELATED ID: 2NRD RELATED DB: PDB REMARK 900 PH 5.4 DBREF 2NRD A 1 340 UNP P25006 NIR_ACHCY 39 378 SEQRES 1 A 340 ALA ALA GLY ALA ALA PRO VAL ASP ILE SER THR LEU PRO SEQRES 2 A 340 ARG VAL LYS VAL ASP LEU VAL LYS PRO PRO PHE VAL HIS SEQRES 3 A 340 ALA HIS ASP GLN VAL ALA LYS THR GLY PRO ARG VAL VAL SEQRES 4 A 340 GLU PHE THR MET THR ILE GLU GLU LYS LYS LEU VAL ILE SEQRES 5 A 340 ASP ARG GLU GLY THR GLU ILE HIS ALA MET THR PHE ASN SEQRES 6 A 340 GLY SER VAL PRO GLY PRO LEU MET VAL VAL HIS GLU ASN SEQRES 7 A 340 ASP TYR VAL GLU LEU ARG LEU ILE ASN PRO ASP THR ASN SEQRES 8 A 340 THR LEU LEU HIS ASN ILE ASP PHE HIS ALA ALA THR GLY SEQRES 9 A 340 ALA LEU GLY GLY GLY ALA LEU THR GLN VAL ASN PRO GLY SEQRES 10 A 340 GLU GLU THR THR LEU ARG PHE LYS ALA THR LYS PRO GLY SEQRES 11 A 340 VAL PHE VAL TYR HIS CYS ALA PRO GLU GLY MET VAL PRO SEQRES 12 A 340 TRP HIS VAL THR SER GLY MET ASN GLY ALA ILE MET VAL SEQRES 13 A 340 LEU PRO ARG ASP GLY LEU LYS ASP GLU LYS GLY GLN PRO SEQRES 14 A 340 LEU THR TYR ASP LYS ILE TYR TYR VAL GLY GLU GLN ASP SEQRES 15 A 340 PHE TYR VAL PRO LYS ASP GLU ALA GLY ASN TYR LYS LYS SEQRES 16 A 340 TYR GLU THR PRO GLY GLU ALA TYR GLU ASP ALA VAL LYS SEQRES 17 A 340 ALA MET ARG THR LEU THR PRO THR HIS ILE VAL PHE ASN SEQRES 18 A 340 GLY ALA VAL GLY ALA LEU THR GLY ASP HIS ALA LEU THR SEQRES 19 A 340 ALA ALA VAL GLY GLU ARG VAL LEU VAL VAL HIS SER GLN SEQRES 20 A 340 ALA ASN ARG ASP THR ARG PRO HIS LEU ILE GLY GLY HIS SEQRES 21 A 340 GLY ASP TYR VAL TRP ALA THR GLY LYS PHE ARG ASN PRO SEQRES 22 A 340 PRO ASP LEU ASP GLN GLU THR TRP LEU ILE PRO GLY GLY SEQRES 23 A 340 THR ALA GLY ALA ALA PHE TYR THR PHE ARG GLN PRO GLY SEQRES 24 A 340 VAL TYR ALA TYR VAL ASN HIS ASN LEU ILE GLU ALA PHE SEQRES 25 A 340 GLU LEU GLY ALA ALA GLY HIS PHE LYS VAL THR GLY GLU SEQRES 26 A 340 TRP ASN ASP ASP LEU MET THR SER VAL VAL LYS PRO ALA SEQRES 27 A 340 SER MET HET CU A 501 1 HET CU A 502 1 HETNAM CU COPPER (II) ION FORMUL 2 CU 2(CU 2+) FORMUL 4 HOH *187(H2 O) HELIX 1 1 ALA A 105 LEU A 111 5 7 HELIX 2 2 VAL A 142 SER A 148 1 7 HELIX 3 3 PRO A 199 THR A 212 1 14 HELIX 4 4 GLY A 229 HIS A 231 5 3 HELIX 5 5 LEU A 308 PHE A 312 1 5 SHEET 1 A 4 PRO A 13 LYS A 16 0 SHEET 2 A 4 ARG A 37 THR A 44 1 N VAL A 38 O PRO A 13 SHEET 3 A 4 TYR A 80 ASN A 87 1 N TYR A 80 O VAL A 39 SHEET 4 A 4 GLU A 118 LYS A 125 -1 N PHE A 124 O VAL A 81 SHEET 1 B 2 ILE A 45 VAL A 51 0 SHEET 2 B 2 GLU A 58 PHE A 64 -1 N THR A 63 O GLU A 46 SHEET 1 C 3 MET A 73 HIS A 76 0 SHEET 2 C 3 ASN A 151 LEU A 157 1 N MET A 155 O MET A 73 SHEET 3 C 3 GLY A 130 HIS A 135 -1 N TYR A 134 O GLY A 152 SHEET 1 D 4 LYS A 174 GLY A 179 0 SHEET 2 D 4 ARG A 240 GLN A 247 1 N LEU A 242 O LYS A 174 SHEET 3 D 4 THR A 287 THR A 294 -1 N TYR A 293 O VAL A 241 SHEET 4 D 4 TYR A 263 TRP A 265 -1 N TRP A 265 O ALA A 290 SHEET 1 E 2 GLU A 180 PHE A 183 0 SHEET 2 E 2 HIS A 217 PHE A 220 -1 N VAL A 219 O GLN A 181 SHEET 1 F 4 LEU A 233 ALA A 236 0 SHEET 2 F 4 ALA A 317 THR A 323 1 N LYS A 321 O LEU A 233 SHEET 3 F 4 GLY A 299 ASN A 305 -1 N TYR A 303 O GLY A 318 SHEET 4 F 4 PRO A 254 ILE A 257 -1 N ILE A 257 O ALA A 302 LINK ND1 HIS A 95 CU CU A 501 1555 1555 2.02 LINK NE2 HIS A 100 CU CU A 502 1555 1555 2.00 LINK NE2 HIS A 135 CU CU A 502 1555 1555 2.04 LINK SG CYS A 136 CU CU A 501 1555 1555 2.16 LINK ND1 HIS A 145 CU CU A 501 1555 1555 2.02 LINK SD MET A 150 CU CU A 501 1555 1555 2.59 LINK NE2 HIS A 306 CU CU A 502 9555 1555 2.19 LINK CU CU A 502 O HOH A5031 1555 1555 1.66 CISPEP 1 PRO A 22 PRO A 23 0 2.14 CISPEP 2 VAL A 68 PRO A 69 0 1.00 SITE 1 CU1 4 HIS A 95 CYS A 136 HIS A 145 MET A 150 SITE 1 CU2 3 HIS A 100 HIS A 135 HOH A5031 SITE 1 AC1 4 HIS A 95 CYS A 136 HIS A 145 MET A 150 SITE 1 AC2 5 ASP A 98 HIS A 100 HIS A 135 HIS A 306 SITE 2 AC2 5 HOH A5031 CRYST1 98.130 98.130 98.130 90.00 90.00 90.00 P 21 3 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010191 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010191 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010191 0.00000