HEADER BIOSYNTHETIC PROTEIN 02-NOV-06 2NRP TITLE MOEA R350A COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOLYBDOPTERIN BIOSYNTHESIS PROTEIN MOEA; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 GENE: MOEA, BISB, CHLE, NARE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: AH69 (DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET11A KEYWDS MOLYBDOPTERIN, MPT, MOCO, MOLYBDENUM, MOEA, MOGA, GEPHYRIN, CNX1, KEYWDS 2 CINNAMON, BIOSYNTHETIC PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.NICOLAS,S.XIANG,H.SCHINDELIN,K.V.RAJAGOPALAN REVDAT 5 27-DEC-23 2NRP 1 REMARK REVDAT 4 20-OCT-21 2NRP 1 REMARK SEQADV REVDAT 3 13-JUL-11 2NRP 1 VERSN REVDAT 2 24-FEB-09 2NRP 1 VERSN REVDAT 1 16-JAN-07 2NRP 0 JRNL AUTH J.D.NICHOLS,S.XIANG,H.SCHINDELIN,K.V.RAJAGOPALAN JRNL TITL MUTATIONAL ANALYSIS OF ESCHERICHIA COLI MOEA: TWO FUNCTIONAL JRNL TITL 2 ACTIVITIES MAP TO THE ACTIVE SITE CLEFT. JRNL REF BIOCHEMISTRY V. 46 78 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17198377 JRNL DOI 10.1021/BI061551Q REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 17145 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.290 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 913 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.08 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1219 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.92 REMARK 3 BIN R VALUE (WORKING SET) : 0.2930 REMARK 3 BIN FREE R VALUE SET COUNT : 86 REMARK 3 BIN FREE R VALUE : 0.4060 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6081 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 18 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.72 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.18000 REMARK 3 B22 (A**2) : -3.93000 REMARK 3 B33 (A**2) : 0.76000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.529 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.387 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 46.900 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.914 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.848 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6215 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 5780 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8445 ; 1.500 ; 1.974 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13408 ; 0.810 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 806 ; 7.958 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 264 ;40.627 ;24.091 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 996 ;20.982 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 46 ;17.363 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 966 ; 0.075 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 7016 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1222 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1399 ; 0.233 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 6260 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3051 ; 0.188 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 4162 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 147 ; 0.195 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.079 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 12 ; 0.103 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 67 ; 0.216 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.275 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 5013 ; 0.636 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1655 ; 0.076 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6437 ; 0.774 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2473 ; 1.028 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2008 ; 1.687 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 53 A 140 REMARK 3 ORIGIN FOR THE GROUP (A): -26.0255 2.1222 -4.5561 REMARK 3 T TENSOR REMARK 3 T11: -0.1787 T22: -0.2001 REMARK 3 T33: -0.0269 T12: 0.0330 REMARK 3 T13: -0.0490 T23: -0.0350 REMARK 3 L TENSOR REMARK 3 L11: 6.1203 L22: 7.7373 REMARK 3 L33: 6.2930 L12: 2.3091 REMARK 3 L13: -0.1926 L23: 3.3416 REMARK 3 S TENSOR REMARK 3 S11: 0.0452 S12: -0.3892 S13: -0.3638 REMARK 3 S21: 0.4009 S22: 0.0124 S23: -0.7324 REMARK 3 S31: -0.1623 S32: 0.2225 S33: -0.0576 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 53 B 140 REMARK 3 ORIGIN FOR THE GROUP (A): -28.7267 89.6799 21.8195 REMARK 3 T TENSOR REMARK 3 T11: 0.2916 T22: 0.3119 REMARK 3 T33: 0.3171 T12: -0.0477 REMARK 3 T13: -0.0233 T23: -0.1030 REMARK 3 L TENSOR REMARK 3 L11: 5.0400 L22: 18.2350 REMARK 3 L33: 10.1960 L12: 3.0135 REMARK 3 L13: 0.6774 L23: -6.1185 REMARK 3 S TENSOR REMARK 3 S11: 0.0041 S12: 0.4773 S13: -0.3376 REMARK 3 S21: -0.0673 S22: 0.3392 S23: 0.9129 REMARK 3 S31: 0.1261 S32: -0.2699 S33: -0.3433 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 7 A 52 REMARK 3 RESIDUE RANGE : B 7 B 52 REMARK 3 RESIDUE RANGE : A 141 A 409 REMARK 3 RESIDUE RANGE : B 141 B 409 REMARK 3 ORIGIN FOR THE GROUP (A): -19.8154 44.0938 14.3917 REMARK 3 T TENSOR REMARK 3 T11: -0.2018 T22: -0.0764 REMARK 3 T33: -0.2152 T12: 0.0201 REMARK 3 T13: -0.0471 T23: 0.0361 REMARK 3 L TENSOR REMARK 3 L11: 1.4013 L22: 2.0870 REMARK 3 L33: 0.9788 L12: 0.6297 REMARK 3 L13: -0.2525 L23: -0.5730 REMARK 3 S TENSOR REMARK 3 S11: -0.1273 S12: 0.2382 S13: 0.1161 REMARK 3 S21: -0.0936 S22: 0.2275 S23: 0.3816 REMARK 3 S31: -0.0931 S32: -0.2740 S33: -0.1002 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NRP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040220. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-AUG-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 17145 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10%-15% PEG 6000/8000, 0.2-0.5 M REMARK 280 CALCIUM ACETATE, 0.1 M CACODYLIC ACID, PH 6.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 44.18550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 50.11300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.37000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 50.11300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 44.18550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 49.37000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER OF CHAINS A AND B REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 PHE A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 GLY A 6 REMARK 465 GLY A 410 REMARK 465 LEU A 411 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 PHE B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 465 GLY B 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP A 259 OG1 THR A 261 1.98 REMARK 500 O ALA B 317 OG SER B 320 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 218 CB CYS A 218 SG -0.119 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 38 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 PRO A 328 C - N - CA ANGL. DEV. = 10.6 DEGREES REMARK 500 ARG A 332 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 26 126.87 -39.05 REMARK 500 LEU A 40 128.75 -39.27 REMARK 500 PRO A 75 158.74 -48.95 REMARK 500 ALA A 82 -69.12 -20.94 REMARK 500 GLN A 84 99.50 -175.34 REMARK 500 GLU A 106 107.49 -19.16 REMARK 500 ALA A 110 154.72 179.47 REMARK 500 ARG A 139 136.67 -37.40 REMARK 500 PRO A 195 126.43 -35.22 REMARK 500 ASP A 198 -80.30 -65.79 REMARK 500 ASP A 228 67.20 -41.45 REMARK 500 LYS A 282 -65.18 -168.17 REMARK 500 ASN A 291 41.18 -143.25 REMARK 500 LEU A 327 15.90 -177.66 REMARK 500 PRO A 328 159.02 3.91 REMARK 500 ALA A 336 40.62 -104.59 REMARK 500 SER A 337 120.57 -172.68 REMARK 500 SER A 376 24.21 -77.10 REMARK 500 ASN A 405 -168.87 -78.83 REMARK 500 ASP B 43 127.00 -37.80 REMARK 500 ASP B 59 101.66 -59.84 REMARK 500 VAL B 63 -163.76 -127.52 REMARK 500 ALA B 82 -74.65 -56.82 REMARK 500 TRP B 90 65.57 37.56 REMARK 500 PRO B 103 109.77 -50.46 REMARK 500 SER B 132 109.10 -55.48 REMARK 500 GLN B 134 115.26 -39.51 REMARK 500 PRO B 192 150.45 -38.87 REMARK 500 ASP B 198 -81.78 18.06 REMARK 500 LYS B 282 -59.39 -178.83 REMARK 500 LEU B 311 -53.81 -126.12 REMARK 500 PRO B 328 157.18 -21.65 REMARK 500 GLN B 369 -118.11 -115.06 REMARK 500 HIS B 372 132.87 -171.89 REMARK 500 SER B 376 -71.75 -70.59 REMARK 500 SER B 378 -18.29 84.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 327 PRO A 328 -143.27 REMARK 500 THR B 366 GLY B 367 -134.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 412 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 413 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1G8R RELATED DB: PDB REMARK 900 RELATED ID: 1G8L RELATED DB: PDB REMARK 900 RELATED ID: 1FC5 RELATED DB: PDB REMARK 900 RELATED ID: 1UZ5 RELATED DB: PDB REMARK 900 RELATED ID: 1WU2 RELATED DB: PDB REMARK 900 RELATED ID: 2NQK RELATED DB: PDB REMARK 900 RELATED ID: 2NQM RELATED DB: PDB REMARK 900 RELATED ID: 2NQN RELATED DB: PDB REMARK 900 RELATED ID: 2NQQ RELATED DB: PDB REMARK 900 RELATED ID: 2NQR RELATED DB: PDB REMARK 900 RELATED ID: 2NQS RELATED DB: PDB REMARK 900 RELATED ID: 2NQU RELATED DB: PDB REMARK 900 RELATED ID: 2NQV RELATED DB: PDB REMARK 900 RELATED ID: 2NRO RELATED DB: PDB REMARK 900 RELATED ID: 2NRS RELATED DB: PDB DBREF 2NRP A 1 411 UNP P12281 MOEA_ECOLI 1 411 DBREF 2NRP B 1 411 UNP P12281 MOEA_ECOLI 1 411 SEQADV 2NRP ALA A 350 UNP P12281 ARG 350 ENGINEERED MUTATION SEQADV 2NRP ALA B 350 UNP P12281 ARG 350 ENGINEERED MUTATION SEQRES 1 A 411 MET GLU PHE THR THR GLY LEU MET SER LEU ASP THR ALA SEQRES 2 A 411 LEU ASN GLU MET LEU SER ARG VAL THR PRO LEU THR ALA SEQRES 3 A 411 GLN GLU THR LEU PRO LEU VAL GLN CYS PHE GLY ARG ILE SEQRES 4 A 411 LEU ALA SER ASP VAL VAL SER PRO LEU ASP VAL PRO GLY SEQRES 5 A 411 PHE ASP ASN SER ALA MET ASP GLY TYR ALA VAL ARG LEU SEQRES 6 A 411 ALA ASP ILE ALA SER GLY GLN PRO LEU PRO VAL ALA GLY SEQRES 7 A 411 LYS SER PHE ALA GLY GLN PRO TYR HIS GLY GLU TRP PRO SEQRES 8 A 411 ALA GLY THR CYS ILE ARG ILE MET THR GLY ALA PRO VAL SEQRES 9 A 411 PRO GLU GLY CYS GLU ALA VAL VAL MET GLN GLU GLN THR SEQRES 10 A 411 GLU GLN MET ASP ASN GLY VAL ARG PHE THR ALA GLU VAL SEQRES 11 A 411 ARG SER GLY GLN ASN ILE ARG ARG ARG GLY GLU ASP ILE SEQRES 12 A 411 SER ALA GLY ALA VAL VAL PHE PRO ALA GLY THR ARG LEU SEQRES 13 A 411 THR THR ALA GLU LEU PRO VAL ILE ALA SER LEU GLY ILE SEQRES 14 A 411 ALA GLU VAL PRO VAL ILE ARG LYS VAL ARG VAL ALA LEU SEQRES 15 A 411 PHE SER THR GLY ASP GLU LEU GLN LEU PRO GLY GLN PRO SEQRES 16 A 411 LEU GLY ASP GLY GLN ILE TYR ASP THR ASN ARG LEU ALA SEQRES 17 A 411 VAL HIS LEU MET LEU GLU GLN LEU GLY CYS GLU VAL ILE SEQRES 18 A 411 ASN LEU GLY ILE ILE ARG ASP ASP PRO HIS ALA LEU ARG SEQRES 19 A 411 ALA ALA PHE ILE GLU ALA ASP SER GLN ALA ASP VAL VAL SEQRES 20 A 411 ILE SER SER GLY GLY VAL SER VAL GLY GLU ALA ASP TYR SEQRES 21 A 411 THR LYS THR ILE LEU GLU GLU LEU GLY GLU ILE ALA PHE SEQRES 22 A 411 TRP LYS LEU ALA ILE LYS PRO GLY LYS PRO PHE ALA PHE SEQRES 23 A 411 GLY LYS LEU SER ASN SER TRP PHE CYS GLY LEU PRO GLY SEQRES 24 A 411 ASN PRO VAL SER ALA THR LEU THR PHE TYR GLN LEU VAL SEQRES 25 A 411 GLN PRO LEU LEU ALA LYS LEU SER GLY ASN THR ALA SER SEQRES 26 A 411 GLY LEU PRO ALA ARG GLN ARG VAL ARG THR ALA SER ARG SEQRES 27 A 411 LEU LYS LYS THR PRO GLY ARG LEU ASP PHE GLN ALA GLY SEQRES 28 A 411 VAL LEU GLN ARG ASN ALA ASP GLY GLU LEU GLU VAL THR SEQRES 29 A 411 THR THR GLY HIS GLN GLY SER HIS ILE PHE SER SER PHE SEQRES 30 A 411 SER LEU GLY ASN CYS PHE ILE VAL LEU GLU ARG ASP ARG SEQRES 31 A 411 GLY ASN VAL GLU VAL GLY GLU TRP VAL GLU VAL GLU PRO SEQRES 32 A 411 PHE ASN ALA LEU PHE GLY GLY LEU SEQRES 1 B 411 MET GLU PHE THR THR GLY LEU MET SER LEU ASP THR ALA SEQRES 2 B 411 LEU ASN GLU MET LEU SER ARG VAL THR PRO LEU THR ALA SEQRES 3 B 411 GLN GLU THR LEU PRO LEU VAL GLN CYS PHE GLY ARG ILE SEQRES 4 B 411 LEU ALA SER ASP VAL VAL SER PRO LEU ASP VAL PRO GLY SEQRES 5 B 411 PHE ASP ASN SER ALA MET ASP GLY TYR ALA VAL ARG LEU SEQRES 6 B 411 ALA ASP ILE ALA SER GLY GLN PRO LEU PRO VAL ALA GLY SEQRES 7 B 411 LYS SER PHE ALA GLY GLN PRO TYR HIS GLY GLU TRP PRO SEQRES 8 B 411 ALA GLY THR CYS ILE ARG ILE MET THR GLY ALA PRO VAL SEQRES 9 B 411 PRO GLU GLY CYS GLU ALA VAL VAL MET GLN GLU GLN THR SEQRES 10 B 411 GLU GLN MET ASP ASN GLY VAL ARG PHE THR ALA GLU VAL SEQRES 11 B 411 ARG SER GLY GLN ASN ILE ARG ARG ARG GLY GLU ASP ILE SEQRES 12 B 411 SER ALA GLY ALA VAL VAL PHE PRO ALA GLY THR ARG LEU SEQRES 13 B 411 THR THR ALA GLU LEU PRO VAL ILE ALA SER LEU GLY ILE SEQRES 14 B 411 ALA GLU VAL PRO VAL ILE ARG LYS VAL ARG VAL ALA LEU SEQRES 15 B 411 PHE SER THR GLY ASP GLU LEU GLN LEU PRO GLY GLN PRO SEQRES 16 B 411 LEU GLY ASP GLY GLN ILE TYR ASP THR ASN ARG LEU ALA SEQRES 17 B 411 VAL HIS LEU MET LEU GLU GLN LEU GLY CYS GLU VAL ILE SEQRES 18 B 411 ASN LEU GLY ILE ILE ARG ASP ASP PRO HIS ALA LEU ARG SEQRES 19 B 411 ALA ALA PHE ILE GLU ALA ASP SER GLN ALA ASP VAL VAL SEQRES 20 B 411 ILE SER SER GLY GLY VAL SER VAL GLY GLU ALA ASP TYR SEQRES 21 B 411 THR LYS THR ILE LEU GLU GLU LEU GLY GLU ILE ALA PHE SEQRES 22 B 411 TRP LYS LEU ALA ILE LYS PRO GLY LYS PRO PHE ALA PHE SEQRES 23 B 411 GLY LYS LEU SER ASN SER TRP PHE CYS GLY LEU PRO GLY SEQRES 24 B 411 ASN PRO VAL SER ALA THR LEU THR PHE TYR GLN LEU VAL SEQRES 25 B 411 GLN PRO LEU LEU ALA LYS LEU SER GLY ASN THR ALA SER SEQRES 26 B 411 GLY LEU PRO ALA ARG GLN ARG VAL ARG THR ALA SER ARG SEQRES 27 B 411 LEU LYS LYS THR PRO GLY ARG LEU ASP PHE GLN ALA GLY SEQRES 28 B 411 VAL LEU GLN ARG ASN ALA ASP GLY GLU LEU GLU VAL THR SEQRES 29 B 411 THR THR GLY HIS GLN GLY SER HIS ILE PHE SER SER PHE SEQRES 30 B 411 SER LEU GLY ASN CYS PHE ILE VAL LEU GLU ARG ASP ARG SEQRES 31 B 411 GLY ASN VAL GLU VAL GLY GLU TRP VAL GLU VAL GLU PRO SEQRES 32 B 411 PHE ASN ALA LEU PHE GLY GLY LEU HET GOL A 412 6 HET GOL B 412 6 HET GOL B 413 6 HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GOL 3(C3 H8 O3) FORMUL 6 HOH *2(H2 O) HELIX 1 1 SER A 9 VAL A 21 1 13 HELIX 2 2 VAL A 33 CYS A 35 5 3 HELIX 3 3 ARG A 64 GLY A 71 1 8 HELIX 4 4 GLU A 160 LEU A 167 1 8 HELIX 5 5 THR A 204 LEU A 216 1 13 HELIX 6 6 ASP A 229 ALA A 244 1 16 HELIX 7 7 ASP A 259 GLY A 269 1 11 HELIX 8 8 ASN A 300 LEU A 311 1 12 HELIX 9 9 LEU A 311 GLY A 321 1 11 HELIX 10 10 PHE A 374 SER A 378 5 5 HELIX 11 11 ASN A 405 GLY A 409 5 5 HELIX 12 12 SER B 9 VAL B 21 1 13 HELIX 13 13 VAL B 33 CYS B 35 5 3 HELIX 14 14 ASP B 67 GLY B 71 5 5 HELIX 15 15 GLU B 160 LEU B 167 1 8 HELIX 16 16 ASP B 203 LEU B 216 1 14 HELIX 17 17 ASP B 229 ALA B 244 1 16 HELIX 18 18 ASP B 259 LEU B 268 1 10 HELIX 19 19 ASN B 300 LEU B 311 1 12 HELIX 20 20 LEU B 311 GLY B 321 1 11 HELIX 21 21 HIS B 372 PHE B 377 1 6 HELIX 22 22 ASN B 405 GLY B 409 5 5 SHEET 1 A 2 GLN A 27 PRO A 31 0 SHEET 2 A 2 GLU A 171 ILE A 175 -1 O VAL A 174 N GLU A 28 SHEET 1 B 2 VAL A 44 VAL A 45 0 SHEET 2 B 2 VAL A 148 PHE A 150 -1 O VAL A 149 N VAL A 44 SHEET 1 C 2 ASN A 55 SER A 56 0 SHEET 2 C 2 ILE A 136 ARG A 137 -1 O ARG A 137 N ASN A 55 SHEET 1 D 4 VAL A 76 SER A 80 0 SHEET 2 D 4 CYS A 95 ILE A 98 1 O ARG A 97 N GLY A 78 SHEET 3 D 4 GLY A 60 VAL A 63 -1 N ALA A 62 O ILE A 96 SHEET 4 D 4 ALA A 110 MET A 113 -1 O ALA A 110 N VAL A 63 SHEET 1 E 2 THR A 117 MET A 120 0 SHEET 2 E 2 GLY A 123 PHE A 126 -1 O ARG A 125 N GLU A 118 SHEET 1 F 6 GLU A 219 ILE A 226 0 SHEET 2 F 6 ARG A 179 THR A 185 1 N SER A 184 O ILE A 226 SHEET 3 F 6 VAL A 246 GLY A 251 1 O VAL A 246 N ALA A 181 SHEET 4 F 6 SER A 292 GLY A 296 1 O TRP A 293 N VAL A 247 SHEET 5 F 6 PRO A 283 LEU A 289 -1 N GLY A 287 O PHE A 294 SHEET 6 F 6 GLU A 270 LYS A 275 -1 N TRP A 274 O PHE A 284 SHEET 1 G 2 LEU A 189 GLN A 190 0 SHEET 2 G 2 ILE A 201 TYR A 202 1 O ILE A 201 N GLN A 190 SHEET 1 H 7 ILE A 278 LYS A 279 0 SHEET 2 H 7 LEU A 346 ARG A 355 1 O PHE A 348 N LYS A 279 SHEET 3 H 7 CYS A 382 VAL A 385 -1 O CYS A 382 N GLY A 351 SHEET 4 H 7 TRP A 398 PRO A 403 -1 O GLU A 402 N PHE A 383 SHEET 5 H 7 GLN A 331 THR A 335 -1 N GLN A 331 O VAL A 401 SHEET 6 H 7 LEU A 361 THR A 365 1 O VAL A 363 N ARG A 334 SHEET 7 H 7 LEU A 346 ARG A 355 -1 N GLN A 354 O GLU A 362 SHEET 1 I 2 GLN B 27 PRO B 31 0 SHEET 2 I 2 GLU B 171 ILE B 175 -1 O VAL B 174 N GLU B 28 SHEET 1 J 2 VAL B 44 VAL B 45 0 SHEET 2 J 2 VAL B 148 PHE B 150 -1 O VAL B 149 N VAL B 44 SHEET 1 K 2 ASN B 55 SER B 56 0 SHEET 2 K 2 ILE B 136 ARG B 137 -1 O ARG B 137 N ASN B 55 SHEET 1 L 4 VAL B 76 SER B 80 0 SHEET 2 L 4 CYS B 95 ILE B 98 1 O ARG B 97 N SER B 80 SHEET 3 L 4 GLY B 60 ALA B 62 -1 N ALA B 62 O ILE B 96 SHEET 4 L 4 VAL B 111 MET B 113 -1 O VAL B 112 N TYR B 61 SHEET 1 M 2 THR B 117 MET B 120 0 SHEET 2 M 2 GLY B 123 PHE B 126 -1 O ARG B 125 N GLU B 118 SHEET 1 N 6 GLU B 219 ILE B 226 0 SHEET 2 N 6 ARG B 179 THR B 185 1 N VAL B 180 O GLU B 219 SHEET 3 N 6 VAL B 246 SER B 249 1 O ILE B 248 N ALA B 181 SHEET 4 N 6 TRP B 293 GLY B 296 1 O CYS B 295 N VAL B 247 SHEET 5 N 6 PRO B 283 LEU B 289 -1 N GLY B 287 O PHE B 294 SHEET 6 N 6 GLY B 269 LYS B 275 -1 N ALA B 272 O PHE B 286 SHEET 1 O 2 LEU B 189 GLN B 190 0 SHEET 2 O 2 ILE B 201 TYR B 202 1 O ILE B 201 N GLN B 190 SHEET 1 P 7 ILE B 278 LYS B 279 0 SHEET 2 P 7 LEU B 346 ARG B 355 1 O PHE B 348 N LYS B 279 SHEET 3 P 7 CYS B 382 LEU B 386 -1 O LEU B 386 N ASP B 347 SHEET 4 P 7 TRP B 398 PRO B 403 -1 O GLU B 402 N PHE B 383 SHEET 5 P 7 GLN B 331 THR B 335 -1 N VAL B 333 O VAL B 399 SHEET 6 P 7 LEU B 361 THR B 365 1 O VAL B 363 N ARG B 334 SHEET 7 P 7 LEU B 346 ARG B 355 -1 N VAL B 352 O THR B 364 CISPEP 1 VAL A 50 PRO A 51 0 0.94 CISPEP 2 LYS A 279 PRO A 280 0 3.66 CISPEP 3 VAL B 50 PRO B 51 0 -0.13 CISPEP 4 LYS B 279 PRO B 280 0 -6.57 SITE 1 AC1 2 SER B 378 GLY B 380 SITE 1 AC2 3 SER A 378 HOH A 413 GLU B 160 SITE 1 AC3 7 GLY B 37 ARG B 38 ILE B 39 LYS B 177 SITE 2 AC3 7 VAL B 178 LEU B 216 GLY B 217 CRYST1 88.371 98.740 100.226 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011316 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010128 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009977 0.00000