HEADER HYDROLASE 02-NOV-06 2NRR TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL RNASEH ENDONUCLASE DOMAIN OF UVRC COMPND MOL_ID: 1; COMPND 2 MOLECULE: UVRABC SYSTEM PROTEIN C; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN (RESIDUES 345-502); COMPND 5 SYNONYM: PROTEIN UVRC, EXCINUCLEASE ABC SUBUNIT C; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: UVRC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTXB1 KEYWDS UVRC, ENDONUCLASE, NER, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.KARAKAS,J.J.TRUGLIO,C.KISKER REVDAT 4 27-DEC-23 2NRR 1 SEQADV REVDAT 3 18-OCT-17 2NRR 1 REMARK REVDAT 2 24-FEB-09 2NRR 1 VERSN REVDAT 1 06-FEB-07 2NRR 0 JRNL AUTH E.KARAKAS,J.J.TRUGLIO,D.CROTEAU,B.RHAU,L.WANG,B.VAN HOUTEN, JRNL AUTH 2 C.KISKER JRNL TITL STRUCTURE OF THE C-TERMINAL HALF OF UVRC REVEALS AN RNASE H JRNL TITL 2 ENDONUCLEASE DOMAIN WITH AN ARGONAUTE-LIKE CATALYTIC TRIAD. JRNL REF EMBO J. V. 26 613 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17245438 JRNL DOI 10.1038/SJ.EMBOJ.7601497 REMARK 2 REMARK 2 RESOLUTION. 1.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 47626 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2412 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.23 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3283 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.65 REMARK 3 BIN R VALUE (WORKING SET) : 0.2340 REMARK 3 BIN FREE R VALUE SET COUNT : 177 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1125 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 195 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 19.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.58000 REMARK 3 B22 (A**2) : 1.57000 REMARK 3 B33 (A**2) : -0.98000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.044 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.046 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.029 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.408 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.950 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1146 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1083 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1544 ; 1.585 ; 1.977 REMARK 3 BOND ANGLES OTHERS (DEGREES): 2507 ; 0.871 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 135 ; 5.745 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 55 ;34.080 ;23.091 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 207 ;13.338 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;21.089 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 174 ; 0.110 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1236 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 234 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 253 ; 0.230 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1103 ; 0.206 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 561 ; 0.187 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 701 ; 0.088 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 115 ; 0.269 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 1 ; 0.055 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 14 ; 0.249 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 48 ; 0.332 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 24 ; 0.265 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 896 ; 2.562 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 281 ; 1.939 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1117 ; 3.008 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 516 ; 4.318 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 427 ; 5.626 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 195 REMARK 3 ORIGIN FOR THE GROUP (A): 30.5980 29.5190 14.7710 REMARK 3 T TENSOR REMARK 3 T11: 0.0012 T22: -0.0699 REMARK 3 T33: 0.0213 T12: -0.0046 REMARK 3 T13: -0.0205 T23: -0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.6697 L22: 0.3617 REMARK 3 L33: 0.6010 L12: 0.1819 REMARK 3 L13: -0.4141 L23: -0.3747 REMARK 3 S TENSOR REMARK 3 S11: -0.0055 S12: -0.0434 S13: 0.0004 REMARK 3 S21: 0.0025 S22: -0.0126 S23: 0.0119 REMARK 3 S31: -0.0087 S32: 0.0540 S33: 0.0180 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 344 A 494 REMARK 3 ORIGIN FOR THE GROUP (A): 29.6640 30.0410 14.6760 REMARK 3 T TENSOR REMARK 3 T11: -0.0063 T22: -0.0005 REMARK 3 T33: -0.0091 T12: 0.0009 REMARK 3 T13: -0.0028 T23: -0.0028 REMARK 3 L TENSOR REMARK 3 L11: 0.1970 L22: 0.1753 REMARK 3 L33: 0.3425 L12: 0.0230 REMARK 3 L13: -0.1883 L23: -0.1583 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: -0.0188 S13: -0.0034 REMARK 3 S21: 0.0059 S22: -0.0047 S23: -0.0015 REMARK 3 S31: -0.0134 S32: 0.0056 S33: -0.0000 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NRR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040222. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 12-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0, 1.07249, 1.07114 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47662 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.200 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.41700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SOLVE 2.07, RESOLVE 2.07 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.00 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.4 M SODIUM CHLORIDE, 0.1 M SODIUM REMARK 280 ACETATE (PH 4.6) AND 0.1 M LITHIUM SULFATE, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.02400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.25050 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 23.25800 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.25050 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.02400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 23.25800 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN A 372 REMARK 465 GLY A 373 REMARK 465 LYS A 374 REMARK 465 GLU A 399 REMARK 465 GLN A 400 REMARK 465 ASP A 401 REMARK 465 HIS A 402 REMARK 465 PRO A 403 REMARK 465 LYS A 456 REMARK 465 LYS A 457 REMARK 465 GLU A 458 REMARK 465 GLU A 459 REMARK 465 HIS A 495 REMARK 465 ARG A 496 REMARK 465 LYS A 497 REMARK 465 ARG A 498 REMARK 465 ARG A 499 REMARK 465 GLU A 500 REMARK 465 LYS A 501 REMARK 465 GLU A 502 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TYR A 375 CG CD1 CD2 CE1 CE2 CZ OH REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 430 O HOH A 179 1.83 REMARK 500 O HOH A 35 O HOH A 195 1.89 REMARK 500 O HOH A 99 O HOH A 180 1.97 REMARK 500 O HOH A 105 O HOH A 183 2.01 REMARK 500 O HOH A 39 O HOH A 182 2.04 REMARK 500 O HIS A 370 O TYR A 375 2.10 REMARK 500 N THR A 460 O HOH A 170 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NE ARG A 394 O GLU A 444 3655 2.14 REMARK 500 O HOH A 26 O HOH A 182 3745 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 478 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YCZ RELATED DB: PDB REMARK 900 THE N TERMINAL DOMAIN OF THE SAME PROTEIN REMARK 900 RELATED ID: 1YD0 RELATED DB: PDB REMARK 900 THE N TERMINAL DOMAIN OF THE SAME PROTEIN REMARK 900 RELATED ID: 1YD1 RELATED DB: PDB REMARK 900 THE N TERMINAL DOMAIN OF THE SAME PROTEIN REMARK 900 RELATED ID: 1YD6 RELATED DB: PDB REMARK 900 THE N TERMINAL DOMAIN OF THE SAME PROTEIN OF BACILLUS CALDOTENAX REMARK 900 RELATED ID: 2NRT RELATED DB: PDB REMARK 900 RELATED ID: 2NRV RELATED DB: PDB REMARK 900 RELATED ID: 2NRW RELATED DB: PDB REMARK 900 RELATED ID: 2NRX RELATED DB: PDB REMARK 900 RELATED ID: 2NRZ RELATED DB: PDB DBREF 2NRR A 345 502 UNP Q9WYA3 UVRC_THEMA 345 502 SEQADV 2NRR MET A 344 UNP Q9WYA3 INITIATING METHIONINE SEQRES 1 A 159 MET GLU ALA LEU GLU GLU LEU MET LYS LEU LEU ASN MET SEQRES 2 A 159 LYS ASP PHE PRO TYR ARG ILE GLU GLY ILE ASP ILE SER SEQRES 3 A 159 HIS LEU GLN GLY LYS TYR THR VAL ALA SER LEU VAL VAL SEQRES 4 A 159 PHE GLU ASP GLY PHE PRO LYS LYS GLY ASP TYR ARG ARG SEQRES 5 A 159 TYR LYS ILE GLU GLN ASP HIS PRO ASP ASP TYR GLU SER SEQRES 6 A 159 ILE ARG THR VAL VAL LYS ARG ARG TYR SER LYS HIS PRO SEQRES 7 A 159 LEU PRO ASN LEU LEU PHE VAL ASP GLY GLY ILE GLY GLN SEQRES 8 A 159 VAL ASN ALA ALA ILE GLU ALA LEU LYS GLU ILE GLY LYS SEQRES 9 A 159 ASP CYS PRO VAL VAL GLY LEU ALA LYS LYS GLU GLU THR SEQRES 10 A 159 VAL VAL PHE GLU ASN ARG GLU ILE HIS LEU PRO HIS ASP SEQRES 11 A 159 HIS PRO VAL LEU ARG LEU LEU VAL GLN ILE ARG ASP GLU SEQRES 12 A 159 THR HIS ARG PHE ALA VAL SER TYR HIS ARG LYS ARG ARG SEQRES 13 A 159 GLU LYS GLU FORMUL 2 HOH *195(H2 O) HELIX 1 1 GLU A 345 LEU A 354 1 10 HELIX 2 2 LYS A 390 TYR A 393 5 4 HELIX 3 3 ASP A 404 SER A 418 1 15 HELIX 4 4 GLY A 431 ILE A 445 1 15 HELIX 5 5 HIS A 474 SER A 493 1 20 SHEET 1 A 3 PHE A 387 PRO A 388 0 SHEET 2 A 3 THR A 376 GLU A 384 -1 N GLU A 384 O PHE A 387 SHEET 3 A 3 ARG A 394 ILE A 398 -1 O ARG A 394 N LEU A 380 SHEET 1 B 7 PHE A 387 PRO A 388 0 SHEET 2 B 7 THR A 376 GLU A 384 -1 N GLU A 384 O PHE A 387 SHEET 3 B 7 ARG A 362 SER A 369 -1 N SER A 369 O VAL A 377 SHEET 4 B 7 LEU A 425 VAL A 428 1 O PHE A 427 N GLU A 364 SHEET 5 B 7 VAL A 451 GLY A 453 1 O VAL A 452 N LEU A 426 SHEET 6 B 7 VAL A 461 PHE A 463 -1 O VAL A 462 N GLY A 453 SHEET 7 B 7 ARG A 466 ILE A 468 -1 O ILE A 468 N VAL A 461 CRYST1 38.048 46.516 84.501 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026283 0.000000 0.000000 0.00000 SCALE2 0.000000 0.021498 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011834 0.00000