HEADER HYDROLASE 02-NOV-06 2NRZ TITLE CRYSTAL STRUCTURE OF THE C-TERMINAL HALF OF UVRC BOUND TO ITS TITLE 2 CATALYTIC DIVALENT CATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UVRABC SYSTEM PROTEIN C; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: THE RNASE H ENDONUCLASE AND HELIX HAIRPIN HELIX DOMAINS OF COMPND 5 UVRC (RESIDUES 339-557); COMPND 6 SYNONYM: PROTEIN UVRC, EXCINUCLEASE ABC SUBUNIT C; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMOTOGA MARITIMA; SOURCE 3 ORGANISM_TAXID: 2336; SOURCE 4 GENE: UVRC; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (CE3)-RIL; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PTXB1 KEYWDS UVRC, RNASE H, ENDONUCLASE, HELIX HAIRPIN HELIX, UVRABC, NER, KEYWDS 2 DIVALENT CATION, MANGANESE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.KARAKAS,J.J.TRUGLIO,C.KISKER REVDAT 4 30-AUG-23 2NRZ 1 REMARK SEQADV LINK REVDAT 3 18-OCT-17 2NRZ 1 REMARK REVDAT 2 24-FEB-09 2NRZ 1 VERSN REVDAT 1 06-FEB-07 2NRZ 0 JRNL AUTH E.KARAKAS,J.J.TRUGLIO,D.CROTEAU,B.RHAU,L.WANG,B.VAN HOUTEN, JRNL AUTH 2 C.KISKER JRNL TITL STRUCTURE OF THE C-TERMINAL HALF OF UVRC REVEALS AN RNASE H JRNL TITL 2 ENDONUCLEASE DOMAIN WITH AN ARGONAUTE-LIKE CATALYTIC TRIAD. JRNL REF EMBO J. V. 26 613 2007 JRNL REFN ISSN 0261-4189 JRNL PMID 17245438 JRNL DOI 10.1038/SJ.EMBOJ.7601497 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 3 NUMBER OF REFLECTIONS : 38686 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.186 REMARK 3 R VALUE (WORKING SET) : 0.183 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1938 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2697 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.79 REMARK 3 BIN R VALUE (WORKING SET) : 0.1850 REMARK 3 BIN FREE R VALUE SET COUNT : 150 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3482 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 3 REMARK 3 SOLVENT ATOMS : 235 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.63 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.11000 REMARK 3 B22 (A**2) : 0.77000 REMARK 3 B33 (A**2) : 0.31000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.09000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.404 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.152 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.330 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.935 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3552 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 3385 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4779 ; 1.538 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7859 ; 0.828 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 428 ; 6.147 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 171 ;31.937 ;22.865 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 680 ;17.143 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 38 ;15.793 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 531 ; 0.099 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3872 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 722 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 744 ; 0.218 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3365 ; 0.192 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1704 ; 0.180 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2243 ; 0.087 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 211 ; 0.188 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 19 ; 0.238 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 73 ; 0.298 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 17 ; 0.276 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2343 ; 1.490 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 875 ; 0.458 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3476 ; 2.135 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1500 ; 2.709 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1303 ; 3.995 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 7577 ; 1.437 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 238 ; 9.211 ; 3.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 6874 ; 2.474 ; 3.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NRZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040230. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-APR-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X26C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.009 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 38877 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.42400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 2NRR REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 14% PEG 8000, 0.1 M HEPES (PH 7.5), REMARK 280 0.01 M MANGANESE CHLORIDE, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 41.92650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 339 REMARK 465 GLY A 558 REMARK 465 MET B 339 REMARK 465 ARG B 340 REMARK 465 LYS B 497 REMARK 465 ARG B 498 REMARK 465 ARG B 499 REMARK 465 GLU B 500 REMARK 465 LYS B 501 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 340 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 499 NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 385 CB - CG - OD2 ANGL. DEV. = -6.3 DEGREES REMARK 500 ARG A 394 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 ARG B 484 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 374 -77.24 -130.88 REMARK 500 LYS A 389 79.48 -105.45 REMARK 500 GLN A 400 142.83 -175.63 REMARK 500 ASP A 404 80.03 -156.26 REMARK 500 LYS A 457 -77.81 -69.12 REMARK 500 ARG A 499 -46.64 163.87 REMARK 500 LEU B 371 -66.16 -101.65 REMARK 500 GLN B 372 137.73 -174.57 REMARK 500 LYS B 389 78.73 -110.19 REMARK 500 PRO B 403 122.45 -39.41 REMARK 500 CYS B 449 137.18 -170.93 REMARK 500 LYS B 457 -70.07 -56.90 REMARK 500 GLU B 459 54.17 -93.24 REMARK 500 SER B 546 111.88 -161.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 301 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 3 O REMARK 620 2 ASP A 385 OD2 97.4 REMARK 620 3 HOH B 195 O 169.0 93.6 REMARK 620 4 ASP B 385 OD1 100.4 92.2 80.3 REMARK 620 5 ASP B 385 OD2 81.9 148.4 89.5 57.4 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN A 303 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 113 O REMARK 620 2 HOH A 116 O 84.4 REMARK 620 3 HOH A 186 O 161.3 82.6 REMARK 620 4 HOH A 193 O 98.6 89.2 94.6 REMARK 620 5 HOH A 198 O 87.6 169.9 106.6 86.0 REMARK 620 6 HIS A 488 ND1 80.9 98.0 87.6 172.7 86.7 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MN B 302 MN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH B 49 O REMARK 620 2 HOH B 169 O 88.3 REMARK 620 3 HOH B 174 O 86.1 164.4 REMARK 620 4 HOH B 196 O 83.3 103.8 90.0 REMARK 620 5 HIS B 488 ND1 95.3 64.8 101.3 168.6 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MN A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NRR RELATED DB: PDB REMARK 900 ENDONUCLASE DOMAIN OF THE SAME PROTEIN REMARK 900 RELATED ID: 2NRT RELATED DB: PDB REMARK 900 THE SAME FRAGMENT OF THE PROTEIN CRYSTALLIZED IN DIFFERENT CRYSTAL REMARK 900 FORM REMARK 900 RELATED ID: 2NRV RELATED DB: PDB REMARK 900 THE SAME FRAGMENT OF THE PROTEIN CRYSTALLIZED IN DIFFERENT CRYSTAL REMARK 900 FORM REMARK 900 RELATED ID: 2NRW RELATED DB: PDB REMARK 900 THE SAME FRAGMENT OF THE PROTEIN CRYSTALLIZED IN DIFFERENT CRYSTAL REMARK 900 FORM REMARK 900 RELATED ID: 2NRX RELATED DB: PDB REMARK 900 THE SAME FRAGMENT OF THE PROTEIN CRYSTALLIZED IN DIFFERENT CRYSTAL REMARK 900 FORM REMARK 900 RELATED ID: 1CYZ RELATED DB: PDB REMARK 900 THE N TERMINAL ENDONUCLASE DOMAIN OF THE SAME PROTEIN DBREF 2NRZ A 339 557 UNP Q9WYA3 UVRC_THEMA 339 557 DBREF 2NRZ B 339 557 UNP Q9WYA3 UVRC_THEMA 339 557 SEQADV 2NRZ GLY A 558 UNP Q9WYA3 CLONING ARTIFACT SEQADV 2NRZ GLY B 558 UNP Q9WYA3 CLONING ARTIFACT SEQRES 1 A 220 MET ARG GLY LEU ARG LYS GLU ALA LEU GLU GLU LEU MET SEQRES 2 A 220 LYS LEU LEU ASN MET LYS ASP PHE PRO TYR ARG ILE GLU SEQRES 3 A 220 GLY ILE ASP ILE SER HIS LEU GLN GLY LYS TYR THR VAL SEQRES 4 A 220 ALA SER LEU VAL VAL PHE GLU ASP GLY PHE PRO LYS LYS SEQRES 5 A 220 GLY ASP TYR ARG ARG TYR LYS ILE GLU GLN ASP HIS PRO SEQRES 6 A 220 ASP ASP TYR GLU SER ILE ARG THR VAL VAL LYS ARG ARG SEQRES 7 A 220 TYR SER LYS HIS PRO LEU PRO ASN LEU LEU PHE VAL ASP SEQRES 8 A 220 GLY GLY ILE GLY GLN VAL ASN ALA ALA ILE GLU ALA LEU SEQRES 9 A 220 LYS GLU ILE GLY LYS ASP CYS PRO VAL VAL GLY LEU ALA SEQRES 10 A 220 LYS LYS GLU GLU THR VAL VAL PHE GLU ASN ARG GLU ILE SEQRES 11 A 220 HIS LEU PRO HIS ASP HIS PRO VAL LEU ARG LEU LEU VAL SEQRES 12 A 220 GLN ILE ARG ASP GLU THR HIS ARG PHE ALA VAL SER TYR SEQRES 13 A 220 HIS ARG LYS ARG ARG GLU LYS GLU SER LEU ARG SER VAL SEQRES 14 A 220 LEU ASP ASN VAL PRO GLY ILE GLY PRO ILE ARG LYS LYS SEQRES 15 A 220 LYS LEU ILE GLU HIS PHE GLY SER LEU GLU ASN ILE ARG SEQRES 16 A 220 SER ALA SER LEU GLU GLU ILE ALA ARG VAL ILE GLY SER SEQRES 17 A 220 THR GLU ILE ALA ARG ARG VAL LEU ASP ILE LEU GLY SEQRES 1 B 220 MET ARG GLY LEU ARG LYS GLU ALA LEU GLU GLU LEU MET SEQRES 2 B 220 LYS LEU LEU ASN MET LYS ASP PHE PRO TYR ARG ILE GLU SEQRES 3 B 220 GLY ILE ASP ILE SER HIS LEU GLN GLY LYS TYR THR VAL SEQRES 4 B 220 ALA SER LEU VAL VAL PHE GLU ASP GLY PHE PRO LYS LYS SEQRES 5 B 220 GLY ASP TYR ARG ARG TYR LYS ILE GLU GLN ASP HIS PRO SEQRES 6 B 220 ASP ASP TYR GLU SER ILE ARG THR VAL VAL LYS ARG ARG SEQRES 7 B 220 TYR SER LYS HIS PRO LEU PRO ASN LEU LEU PHE VAL ASP SEQRES 8 B 220 GLY GLY ILE GLY GLN VAL ASN ALA ALA ILE GLU ALA LEU SEQRES 9 B 220 LYS GLU ILE GLY LYS ASP CYS PRO VAL VAL GLY LEU ALA SEQRES 10 B 220 LYS LYS GLU GLU THR VAL VAL PHE GLU ASN ARG GLU ILE SEQRES 11 B 220 HIS LEU PRO HIS ASP HIS PRO VAL LEU ARG LEU LEU VAL SEQRES 12 B 220 GLN ILE ARG ASP GLU THR HIS ARG PHE ALA VAL SER TYR SEQRES 13 B 220 HIS ARG LYS ARG ARG GLU LYS GLU SER LEU ARG SER VAL SEQRES 14 B 220 LEU ASP ASN VAL PRO GLY ILE GLY PRO ILE ARG LYS LYS SEQRES 15 B 220 LYS LEU ILE GLU HIS PHE GLY SER LEU GLU ASN ILE ARG SEQRES 16 B 220 SER ALA SER LEU GLU GLU ILE ALA ARG VAL ILE GLY SER SEQRES 17 B 220 THR GLU ILE ALA ARG ARG VAL LEU ASP ILE LEU GLY HET MN A 301 1 HET MN A 303 1 HET MN B 302 1 HETNAM MN MANGANESE (II) ION FORMUL 3 MN 3(MN 2+) FORMUL 6 HOH *235(H2 O) HELIX 1 1 ARG A 343 LEU A 354 1 12 HELIX 2 2 LYS A 390 TYR A 393 5 4 HELIX 3 3 ASP A 404 SER A 418 1 15 HELIX 4 4 GLY A 431 ILE A 445 1 15 HELIX 5 5 HIS A 474 TYR A 494 1 21 HELIX 6 6 ARG A 496 ASP A 509 1 14 HELIX 7 7 GLY A 515 GLY A 527 1 13 HELIX 8 8 SER A 528 SER A 534 1 7 HELIX 9 9 SER A 536 GLY A 545 1 10 HELIX 10 10 SER A 546 LEU A 557 1 12 HELIX 11 11 ARG B 343 LEU B 354 1 12 HELIX 12 12 LYS B 390 TYR B 393 5 4 HELIX 13 13 ASP B 404 SER B 418 1 15 HELIX 14 14 GLY B 431 ILE B 445 1 15 HELIX 15 15 HIS B 474 TYR B 494 1 21 HELIX 16 16 SER B 503 LEU B 508 1 6 HELIX 17 17 GLY B 515 GLY B 527 1 13 HELIX 18 18 SER B 528 SER B 534 1 7 HELIX 19 19 SER B 536 GLY B 545 1 10 HELIX 20 20 SER B 546 GLY B 558 1 13 SHEET 1 A 3 PHE A 387 PRO A 388 0 SHEET 2 A 3 TYR A 375 GLU A 384 -1 N GLU A 384 O PHE A 387 SHEET 3 A 3 ARG A 394 GLU A 399 -1 O ARG A 394 N LEU A 380 SHEET 1 B 7 PHE A 387 PRO A 388 0 SHEET 2 B 7 TYR A 375 GLU A 384 -1 N GLU A 384 O PHE A 387 SHEET 3 B 7 ARG A 362 LEU A 371 -1 N SER A 369 O VAL A 377 SHEET 4 B 7 LEU A 425 ASP A 429 1 O PHE A 427 N GLU A 364 SHEET 5 B 7 VAL A 451 LEU A 454 1 O VAL A 452 N LEU A 426 SHEET 6 B 7 VAL A 461 PHE A 463 -1 O VAL A 462 N GLY A 453 SHEET 7 B 7 ARG A 466 ILE A 468 -1 O ILE A 468 N VAL A 461 SHEET 1 C 3 PHE B 387 PRO B 388 0 SHEET 2 C 3 TYR B 375 GLU B 384 -1 N GLU B 384 O PHE B 387 SHEET 3 C 3 ARG B 394 GLU B 399 -1 O ARG B 394 N LEU B 380 SHEET 1 D 7 PHE B 387 PRO B 388 0 SHEET 2 D 7 TYR B 375 GLU B 384 -1 N GLU B 384 O PHE B 387 SHEET 3 D 7 ARG B 362 GLN B 372 -1 N ILE B 363 O PHE B 383 SHEET 4 D 7 LEU B 425 ASP B 429 1 O PHE B 427 N GLU B 364 SHEET 5 D 7 VAL B 451 LEU B 454 1 O VAL B 452 N LEU B 426 SHEET 6 D 7 VAL B 461 PHE B 463 -1 O VAL B 462 N GLY B 453 SHEET 7 D 7 ARG B 466 ILE B 468 -1 O ILE B 468 N VAL B 461 LINK O HOH A 3 MN MN A 301 1555 1555 2.38 LINK O HOH A 113 MN MN A 303 1555 1555 2.68 LINK O HOH A 116 MN MN A 303 1555 1555 2.18 LINK O HOH A 186 MN MN A 303 1555 1555 2.29 LINK O HOH A 193 MN MN A 303 1555 1555 2.28 LINK O HOH A 198 MN MN A 303 1555 1555 2.37 LINK MN MN A 301 OD2 ASP A 385 1555 1555 2.43 LINK MN MN A 301 O HOH B 195 1555 1555 2.21 LINK MN MN A 301 OD1 ASP B 385 1555 1555 2.37 LINK MN MN A 301 OD2 ASP B 385 1555 1555 2.22 LINK MN MN A 303 ND1 HIS A 488 1555 1555 2.38 LINK O HOH B 49 MN MN B 302 1555 1555 2.15 LINK O HOH B 169 MN MN B 302 1555 1555 2.74 LINK O HOH B 174 MN MN B 302 1555 1555 2.42 LINK O HOH B 196 MN MN B 302 1555 1555 1.98 LINK MN MN B 302 ND1 HIS B 488 1555 1555 2.03 SITE 1 AC1 4 HOH A 3 ASP A 385 HOH B 195 ASP B 385 SITE 1 AC2 6 HOH B 49 HOH B 169 HOH B 174 HOH B 196 SITE 2 AC2 6 ASP B 367 HIS B 488 SITE 1 AC3 6 HOH A 113 HOH A 116 HOH A 186 HOH A 193 SITE 2 AC3 6 HOH A 198 HIS A 488 CRYST1 35.395 83.853 100.642 90.00 99.49 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.028253 0.000000 0.004723 0.00000 SCALE2 0.000000 0.011926 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010074 0.00000