HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 03-NOV-06 2NS9 TITLE CRYSTAL STRUCTURE OF PROTEIN APE2225 FROM AEROPYRUM PERNIX K1, PFAM TITLE 2 COXG COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN APE2225; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEROPYRUM PERNIX; SOURCE 3 ORGANISM_TAXID: 56636; SOURCE 4 GENE: APE2225; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PSGX4 KEYWDS UNCHARACTERIZED CONSERVED PROTEIN, STRUCTURAL GENOMICS, PSI, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL KEYWDS 3 GENOMICS, NYSGXRC, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR X.JIN,A.BERA,S.WASSERMAN,D.SMITH,J.M.SAUDER,S.K.BURLEY,L.SHAPIRO,NEW AUTHOR 2 YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS (NYSGXRC) REVDAT 6 27-DEC-23 2NS9 1 REMARK REVDAT 5 03-FEB-21 2NS9 1 AUTHOR JRNL REMARK SEQADV REVDAT 4 14-NOV-18 2NS9 1 AUTHOR REVDAT 3 13-JUL-11 2NS9 1 VERSN REVDAT 2 24-FEB-09 2NS9 1 VERSN REVDAT 1 14-NOV-06 2NS9 0 JRNL AUTH X.JIN,A.BERA,S.WASSERMAN,D.SMITH,J.M.SAUDER,S.K.BURLEY, JRNL AUTH 2 L.SHAPIRO JRNL TITL CRYSTAL STRUCTURE OF HYPOTHETICAL PROTEIN APE2225 FROM JRNL TITL 2 AEROPYRUM PERNIX K1 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 23514 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.278 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1241 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1627 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.2310 REMARK 3 BIN FREE R VALUE SET COUNT : 78 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2311 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 10 REMARK 3 SOLVENT ATOMS : 169 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.03000 REMARK 3 B22 (A**2) : 0.96000 REMARK 3 B33 (A**2) : 0.12000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.05000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.173 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.167 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.101 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.436 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.926 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.871 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2404 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3244 ; 1.916 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 318 ; 8.797 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 102 ;31.880 ;21.667 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 414 ;16.573 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;19.484 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 351 ; 0.127 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1824 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1111 ; 0.228 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1633 ; 0.308 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 158 ; 0.203 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 90 ; 0.274 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.226 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1555 ; 1.230 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2416 ; 1.872 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 950 ; 3.136 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 820 ; 5.049 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 5 A 156 REMARK 3 ORIGIN FOR THE GROUP (A): 48.6933 1.2795 9.0569 REMARK 3 T TENSOR REMARK 3 T11: -0.0846 T22: -0.1134 REMARK 3 T33: -0.0673 T12: 0.0056 REMARK 3 T13: 0.0024 T23: 0.0191 REMARK 3 L TENSOR REMARK 3 L11: 2.9487 L22: 1.5911 REMARK 3 L33: 0.4919 L12: -0.9717 REMARK 3 L13: -0.3698 L23: 0.3525 REMARK 3 S TENSOR REMARK 3 S11: 0.0318 S12: 0.0347 S13: -0.0116 REMARK 3 S21: -0.0695 S22: -0.0147 S23: -0.0031 REMARK 3 S31: -0.0272 S32: 0.0113 S33: -0.0170 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 153 REMARK 3 ORIGIN FOR THE GROUP (A): 82.2825 -6.7011 24.0181 REMARK 3 T TENSOR REMARK 3 T11: -0.0573 T22: 0.0111 REMARK 3 T33: -0.0433 T12: 0.0184 REMARK 3 T13: -0.0130 T23: -0.0326 REMARK 3 L TENSOR REMARK 3 L11: 3.1475 L22: 0.6383 REMARK 3 L33: 1.0606 L12: -0.4550 REMARK 3 L13: -0.0079 L23: -0.4240 REMARK 3 S TENSOR REMARK 3 S11: -0.0126 S12: -0.4931 S13: -0.0351 REMARK 3 S21: 0.0398 S22: 0.0117 S23: -0.0379 REMARK 3 S31: -0.0949 S32: -0.0171 S33: 0.0009 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. THE FRIEDEL PAIRS WERE USED FOR PHASING REMARK 4 REMARK 4 2NS9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040240. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97950 REMARK 200 MONOCHROMATOR : SI 111 REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32448 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 22.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : 0.09000 REMARK 200 FOR THE DATA SET : 10.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.93 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.70 REMARK 200 R MERGE FOR SHELL (I) : 0.32700 REMARK 200 R SYM FOR SHELL (I) : 0.28200 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: THE STRUCTURE FACTOR FILE CONTAINS FRIEDEL PAIRS REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22% PEG 3350, 0.2M AMMONIUM ACETATE, REMARK 280 0.1M HEPES, PH 7.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 60.86500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 16.54100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 60.86500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 16.54100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 0 REMARK 465 LEU A 1 REMARK 465 ARG A 2 REMARK 465 LEU A 3 REMARK 465 HIS A 4 REMARK 465 SER B 0 REMARK 465 LEU B 1 REMARK 465 GLY B 154 REMARK 465 GLU B 155 REMARK 465 ALA B 156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG B 2 CG CD NE CZ NH1 NH2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O PRO B 42 O HOH B 218 1.84 REMARK 500 O HOH A 220 O HOH A 229 2.09 REMARK 500 N GLY B 94 O1 PO4 B 157 2.10 REMARK 500 O HOH A 159 O HOH A 223 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLY B 109 CA GLY B 109 C 0.140 REMARK 500 GLY B 109 C GLY B 109 O 0.176 REMARK 500 GLY B 110 N GLY B 110 CA 0.096 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 64 C - N - CA ANGL. DEV. = 14.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 64 -29.94 -32.73 REMARK 500 GLU A 76 -87.40 -111.95 REMARK 500 LEU A 78 91.56 -160.17 REMARK 500 LEU A 78 88.75 -158.72 REMARK 500 SER B 21 21.62 -74.12 REMARK 500 LEU B 62 -81.93 -94.21 REMARK 500 PRO B 64 -28.59 -9.72 REMARK 500 LYS B 80 -4.85 -54.78 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY A 63 PRO A 64 51.87 REMARK 500 GLU A 155 ALA A 156 147.45 REMARK 500 GLU B 50 ASP B 51 -92.13 REMARK 500 LEU B 62 GLY B 63 50.01 REMARK 500 GLY B 63 PRO B 64 46.22 REMARK 500 GLU B 79 LYS B 80 -147.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 157 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 157 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-10024B RELATED DB: TARGETDB DBREF 2NS9 A 2 156 UNP Q9Y9R3 Q9Y9R3_AERPE 2 156 DBREF 2NS9 B 2 156 UNP Q9Y9R3 Q9Y9R3_AERPE 2 156 SEQADV 2NS9 SER A 0 UNP Q9Y9R3 EXPRESSION TAG SEQADV 2NS9 LEU A 1 UNP Q9Y9R3 EXPRESSION TAG SEQADV 2NS9 SER B 0 UNP Q9Y9R3 EXPRESSION TAG SEQADV 2NS9 LEU B 1 UNP Q9Y9R3 EXPRESSION TAG SEQRES 1 A 157 SER LEU ARG LEU HIS ALA GLY VAL TRP GLY LEU LYS VAL SEQRES 2 A 157 ARG TYR GLU GLY SER PHE GLU VAL SER LYS THR PRO GLU SEQRES 3 A 157 GLU VAL PHE GLU PHE LEU THR ASP PRO LYS ARG PHE SER SEQRES 4 A 157 ARG ALA PHE PRO GLY PHE LYS SER VAL GLU VAL GLU ASP SEQRES 5 A 157 GLY SER PHE THR ILE GLU LEU ARG LEU SER LEU GLY PRO SEQRES 6 A 157 LEU ARG GLY ASP ALA ARG VAL ARG ALA SER PHE GLU ASP SEQRES 7 A 157 LEU GLU LYS PRO SER LYS ALA THR VAL LYS GLY SER GLY SEQRES 8 A 157 ARG GLY ALA GLY SER THR LEU ASP PHE THR LEU ARG PHE SEQRES 9 A 157 ALA VAL GLU PRO SER GLY GLY GLY SER ARG VAL SER TRP SEQRES 10 A 157 VAL PHE GLU GLY ASN VAL GLY GLY LEU ALA ALA SER MET SEQRES 11 A 157 GLY GLY ARG VAL LEU ASP SER LEU ALA ARG ARG MET ILE SEQRES 12 A 157 ASN ASP VAL ILE SER GLY VAL LYS ARG GLU LEU GLY GLU SEQRES 13 A 157 ALA SEQRES 1 B 157 SER LEU ARG LEU HIS ALA GLY VAL TRP GLY LEU LYS VAL SEQRES 2 B 157 ARG TYR GLU GLY SER PHE GLU VAL SER LYS THR PRO GLU SEQRES 3 B 157 GLU VAL PHE GLU PHE LEU THR ASP PRO LYS ARG PHE SER SEQRES 4 B 157 ARG ALA PHE PRO GLY PHE LYS SER VAL GLU VAL GLU ASP SEQRES 5 B 157 GLY SER PHE THR ILE GLU LEU ARG LEU SER LEU GLY PRO SEQRES 6 B 157 LEU ARG GLY ASP ALA ARG VAL ARG ALA SER PHE GLU ASP SEQRES 7 B 157 LEU GLU LYS PRO SER LYS ALA THR VAL LYS GLY SER GLY SEQRES 8 B 157 ARG GLY ALA GLY SER THR LEU ASP PHE THR LEU ARG PHE SEQRES 9 B 157 ALA VAL GLU PRO SER GLY GLY GLY SER ARG VAL SER TRP SEQRES 10 B 157 VAL PHE GLU GLY ASN VAL GLY GLY LEU ALA ALA SER MET SEQRES 11 B 157 GLY GLY ARG VAL LEU ASP SER LEU ALA ARG ARG MET ILE SEQRES 12 B 157 ASN ASP VAL ILE SER GLY VAL LYS ARG GLU LEU GLY GLU SEQRES 13 B 157 ALA HET PO4 A 157 5 HET PO4 B 157 5 HETNAM PO4 PHOSPHATE ION FORMUL 3 PO4 2(O4 P 3-) FORMUL 5 HOH *169(H2 O) HELIX 1 1 THR A 23 THR A 32 1 10 HELIX 2 2 ASP A 33 SER A 38 1 6 HELIX 3 3 ARG A 39 PHE A 41 5 3 HELIX 4 4 ALA A 126 MET A 129 5 4 HELIX 5 5 GLY A 130 GLY A 154 1 25 HELIX 6 6 THR B 23 THR B 32 1 10 HELIX 7 7 ASP B 33 SER B 38 1 6 HELIX 8 8 ARG B 39 PHE B 41 5 3 HELIX 9 9 LEU B 125 MET B 129 1 5 HELIX 10 10 GLY B 130 LEU B 153 1 24 SHEET 1 A14 PHE A 44 GLU A 50 0 SHEET 2 A14 SER A 53 SER A 61 -1 O GLU A 57 N SER A 46 SHEET 3 A14 ARG A 66 GLU A 79 -1 O ALA A 73 N PHE A 54 SHEET 4 A14 LYS A 83 ARG A 91 -1 O LYS A 83 N GLU A 79 SHEET 5 A14 SER A 95 SER A 108 -1 O LEU A 101 N VAL A 86 SHEET 6 A14 GLY A 111 GLY A 124 -1 O SER A 115 N ALA A 104 SHEET 7 A14 GLY A 6 VAL A 20 -1 N TYR A 14 O PHE A 118 SHEET 8 A14 HIS B 4 VAL B 20 -1 O LYS B 11 N GLY A 9 SHEET 9 A14 GLY B 111 GLY B 124 -1 O VAL B 122 N LEU B 10 SHEET 10 A14 SER B 95 SER B 108 -1 N SER B 108 O GLY B 111 SHEET 11 A14 LYS B 83 ARG B 91 -1 N VAL B 86 O LEU B 101 SHEET 12 A14 ARG B 66 GLU B 79 -1 N ARG B 72 O SER B 89 SHEET 13 A14 SER B 53 SER B 61 -1 N ILE B 56 O VAL B 71 SHEET 14 A14 PHE B 44 GLU B 50 -1 N GLU B 50 O SER B 53 CISPEP 1 LEU A 62 GLY A 63 0 -1.77 CISPEP 2 LYS A 80 PRO A 81 0 0.15 SITE 1 AC1 6 LEU A 65 ARG A 66 GLY A 92 ALA A 93 SITE 2 AC1 6 GLY A 94 SER A 95 SITE 1 AC2 4 GLY B 92 ALA B 93 GLY B 94 SER B 95 CRYST1 121.730 33.082 78.442 90.00 121.40 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008215 0.000000 0.005014 0.00000 SCALE2 0.000000 0.030228 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014936 0.00000