HEADER HYDROLASE 06-NOV-06 2NT1 TITLE STRUCTURE OF ACID-BETA-GLUCOSIDASE AT NEUTRAL PH COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUCOSYLCERAMIDASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 SYNONYM: BETA-GLUCOCEREBROSIDASE, ACID BETA-GLUCOSIDASE, D-GLUCOSYL- COMPND 5 N-ACYLSPHINGOSINE GLUCOHYDROLASE, ALGLUCERASE, IMIGLUCERASE; COMPND 6 EC: 3.2.1.45; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: GBA; SOURCE 6 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 7 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 9 EXPRESSION_SYSTEM_ORGAN: OVARY KEYWDS ACID-BETA-GLUCOSIDASE, CEREZYME, GLUCOSYLCERAMIDE, GAUCHER DISEASE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR R.L.LIEBERMAN,G.A.PETSKO,D.RINGE REVDAT 8 13-NOV-24 2NT1 1 REMARK REVDAT 7 30-AUG-23 2NT1 1 HETSYN REVDAT 6 29-JUL-20 2NT1 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 LINK SITE REVDAT 5 18-OCT-17 2NT1 1 REMARK REVDAT 4 13-JUL-11 2NT1 1 VERSN REVDAT 3 24-FEB-09 2NT1 1 VERSN REVDAT 2 30-JAN-07 2NT1 1 JRNL REVDAT 1 26-DEC-06 2NT1 0 JRNL AUTH R.L.LIEBERMAN,B.A.WUSTMAN,P.HUERTAS,A.C.POWE,C.W.PINE, JRNL AUTH 2 R.KHANNA,M.G.SCHLOSSMACHER,D.RINGE,G.A.PETSKO JRNL TITL STRUCTURE OF ACID BETA-GLUCOSIDASE WITH PHARMACOLOGICAL JRNL TITL 2 CHAPERONE PROVIDES INSIGHT INTO GAUCHER DISEASE. JRNL REF NAT.CHEM.BIOL. V. 3 101 2007 JRNL REFN ISSN 1552-4450 JRNL PMID 17187079 JRNL DOI 10.1038/NCHEMBIO850 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.8 REMARK 3 NUMBER OF REFLECTIONS : 119536 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.175 REMARK 3 FREE R VALUE : 0.240 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 6021 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6627 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2540 REMARK 3 BIN FREE R VALUE SET COUNT : 362 REMARK 3 BIN FREE R VALUE : 0.3170 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 15720 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 446 REMARK 3 SOLVENT ATOMS : 1344 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.09000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.06000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.265 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.225 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.160 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.679 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.912 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 16584 ; 0.022 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 22668 ; 1.969 ; 1.971 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 1984 ; 8.180 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 720 ;37.509 ;23.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 2516 ;17.744 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 84 ;23.386 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 2412 ; 0.135 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 12532 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 8004 ; 0.223 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 10701 ; 0.311 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 1340 ; 0.236 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 64 ; 0.171 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 22 ; 0.158 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 10226 ; 1.095 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 16072 ; 1.798 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 7349 ; 2.766 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 6596 ; 4.083 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 2 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A C REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 1 A 497 5 REMARK 3 1 C 1 C 497 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 1988 ; 0.110 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 1942 ; 0.300 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 1988 ; 0.630 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1942 ; 1.280 ;10.000 REMARK 3 REMARK 3 NCS GROUP NUMBER : 2 REMARK 3 CHAIN NAMES : B D REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 B 1 B 497 5 REMARK 3 1 D 1 D 497 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 2 B (A): 1988 ; 0.110 ; 0.500 REMARK 3 LOOSE POSITIONAL 2 B (A): 1942 ; 0.400 ; 5.000 REMARK 3 MEDIUM THERMAL 2 B (A**2): 1988 ; 0.550 ; 2.000 REMARK 3 LOOSE THERMAL 2 B (A**2): 1942 ; 1.280 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NT1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040265. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 119558 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.10600 REMARK 200 FOR THE DATA SET : 7.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.38 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : 0.45400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: 2NT0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 62.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8 M NA DIHYDROGEN PHOSPHATE 0.8 M K REMARK 280 DIHYDROGEN PHOSPHATE 0.1 M HEPES BUFFER PH 7.5 CRYOPROTECTED IN REMARK 280 2 M LITHIUM SULFATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 45.89600 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4, 5 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 5 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 21170 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 69610 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -435.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 1157 O HOH C 1165 0.00 REMARK 500 O HOH C 1157 O HOH C 1166 0.00 REMARK 500 O HOH C 1165 O HOH C 1166 0.00 REMARK 500 OE1 GLN A 73 O HOH A 800 1.83 REMARK 500 O4 NAG D 498 O HOH D 769 1.93 REMARK 500 O SER C 339 O3 PO4 C 517 1.98 REMARK 500 OH TYR A 133 O4 PO4 A 515 2.05 REMARK 500 O HOH A 520 O HOH A 853 2.06 REMARK 500 O SER A 339 O2 PO4 A 518 2.10 REMARK 500 O HOH A 765 O HOH A 863 2.10 REMARK 500 O3 PO4 C 514 O HOH C 1147 2.11 REMARK 500 NE2 GLN D 207 OD1 ASP D 263 2.12 REMARK 500 O HOH B 529 O HOH B 784 2.13 REMARK 500 NE2 GLN A 207 OD1 ASP A 263 2.14 REMARK 500 O HOH A 732 O HOH A 851 2.14 REMARK 500 NE2 GLN B 207 OD1 ASP B 263 2.14 REMARK 500 O HOH D 696 O HOH D 795 2.16 REMARK 500 OH TYR C 133 O3 PO4 C 518 2.16 REMARK 500 O HOH A 796 O HOH A 847 2.17 REMARK 500 O HOH C 1010 O HOH C 1048 2.17 REMARK 500 O HOH D 522 O HOH D 798 2.17 REMARK 500 O1 PO4 A 514 O HOH A 734 2.18 REMARK 500 O HOH C 1084 O HOH C 1114 2.18 REMARK 500 O1 PO4 A 508 O HOH A 821 2.19 REMARK 500 CB ASP A 358 O HOH A 878 2.19 REMARK 500 N PHE B 347 O HOH B 800 2.19 REMARK 500 O4 NAG A 498 O HOH A 765 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 111 CG GLU A 111 CD 0.109 REMARK 500 GLN A 169 CB GLN A 169 CG 0.164 REMARK 500 TRP A 378 CB TRP A 378 CG -0.118 REMARK 500 CYS B 126 CB CYS B 126 SG -0.101 REMARK 500 GLU C 111 CG GLU C 111 CD 0.092 REMARK 500 GLU D 112 CG GLU D 112 CD 0.092 REMARK 500 CYS D 126 CB CYS D 126 SG -0.104 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 153 CB - CG - OD2 ANGL. DEV. = -5.5 DEGREES REMARK 500 GLY A 344 N - CA - C ANGL. DEV. = 16.3 DEGREES REMARK 500 LEU B 286 CA - CB - CG ANGL. DEV. = 14.6 DEGREES REMARK 500 LEU B 317 CA - CB - CG ANGL. DEV. = 15.8 DEGREES REMARK 500 LEU B 480 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 PRO C 29 C - N - CA ANGL. DEV. = 10.5 DEGREES REMARK 500 ARG C 39 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG C 39 NE - CZ - NH2 ANGL. DEV. = -6.0 DEGREES REMARK 500 ARG C 44 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 LEU C 286 CA - CB - CG ANGL. DEV. = 17.6 DEGREES REMARK 500 LEU C 314 C - N - CA ANGL. DEV. = 16.0 DEGREES REMARK 500 LEU D 34 CA - CB - CG ANGL. DEV. = 14.9 DEGREES REMARK 500 PRO D 319 C - N - CA ANGL. DEV. = 11.0 DEGREES REMARK 500 LEU D 480 CA - CB - CG ANGL. DEV. = 16.4 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 19 -156.83 -157.85 REMARK 500 PHE A 75 -137.53 -125.85 REMARK 500 ALA A 124 -159.28 83.12 REMARK 500 LEU A 156 -64.41 -108.24 REMARK 500 GLN A 169 -72.25 -62.87 REMARK 500 ASN A 192 -159.55 -133.87 REMARK 500 ASP A 203 -176.30 -69.82 REMARK 500 GLU A 233 133.09 165.25 REMARK 500 GLU A 235 61.61 38.44 REMARK 500 LEU A 249 112.72 -167.57 REMARK 500 ASP A 263 -65.96 -124.79 REMARK 500 LEU A 281 -83.23 75.21 REMARK 500 THR A 323 -75.11 -112.10 REMARK 500 SER A 345 62.86 177.54 REMARK 500 LYS A 346 108.82 103.07 REMARK 500 HIS A 374 4.54 81.84 REMARK 500 TRP A 381 -142.42 -72.68 REMARK 500 ARG A 395 132.05 174.55 REMARK 500 THR B 63 -47.58 95.47 REMARK 500 PHE B 75 -138.70 -121.60 REMARK 500 ALA B 124 -150.85 67.71 REMARK 500 LEU B 156 -71.07 -103.34 REMARK 500 PRO B 182 142.76 -39.40 REMARK 500 ASN B 192 -168.80 -122.34 REMARK 500 GLU B 233 134.26 172.40 REMARK 500 ASP B 263 -65.57 -125.23 REMARK 500 LEU B 281 -80.75 76.37 REMARK 500 THR B 323 -74.58 -112.81 REMARK 500 SER B 345 -152.03 -103.20 REMARK 500 LYS B 346 90.23 87.49 REMARK 500 HIS B 374 0.05 82.61 REMARK 500 TRP B 381 -148.76 -79.96 REMARK 500 ASN B 382 121.11 -29.74 REMARK 500 VAL B 477 -33.07 -141.37 REMARK 500 ASN C 19 -158.24 -147.54 REMARK 500 PRO C 29 131.07 -39.23 REMARK 500 PHE C 75 -131.42 -121.05 REMARK 500 ALA C 124 -157.65 78.73 REMARK 500 PHE C 128 46.53 -76.61 REMARK 500 TYR C 133 144.94 179.91 REMARK 500 LEU C 156 -68.80 -99.84 REMARK 500 PRO C 182 140.71 -39.41 REMARK 500 ASN C 192 -152.70 -127.10 REMARK 500 GLU C 233 136.35 168.08 REMARK 500 LEU C 249 110.55 -163.56 REMARK 500 LEU C 281 -83.36 76.05 REMARK 500 TYR C 313 -67.15 -169.35 REMARK 500 LEU C 314 -28.28 77.91 REMARK 500 THR C 323 -76.50 -108.42 REMARK 500 TRP C 381 -132.58 -83.40 REMARK 500 REMARK 500 THIS ENTRY HAS 71 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER B 345 LYS B 346 -141.71 REMARK 500 LEU C 91 ASN C 92 -146.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2NSX RELATED DB: PDB REMARK 900 RELATED ID: 2NT0 RELATED DB: PDB DBREF 2NT1 A 1 497 UNP P04062 GLCM_HUMAN 40 536 DBREF 2NT1 B 1 497 UNP P04062 GLCM_HUMAN 40 536 DBREF 2NT1 C 1 497 UNP P04062 GLCM_HUMAN 40 536 DBREF 2NT1 D 1 497 UNP P04062 GLCM_HUMAN 40 536 SEQADV 2NT1 HIS A 495 UNP P04062 ARG 534 CONFLICT SEQADV 2NT1 HIS B 495 UNP P04062 ARG 534 CONFLICT SEQADV 2NT1 HIS C 495 UNP P04062 ARG 534 CONFLICT SEQADV 2NT1 HIS D 495 UNP P04062 ARG 534 CONFLICT SEQRES 1 A 497 ALA ARG PRO CYS ILE PRO LYS SER PHE GLY TYR SER SER SEQRES 2 A 497 VAL VAL CYS VAL CYS ASN ALA THR TYR CYS ASP SER PHE SEQRES 3 A 497 ASP PRO PRO THR PHE PRO ALA LEU GLY THR PHE SER ARG SEQRES 4 A 497 TYR GLU SER THR ARG SER GLY ARG ARG MET GLU LEU SER SEQRES 5 A 497 MET GLY PRO ILE GLN ALA ASN HIS THR GLY THR GLY LEU SEQRES 6 A 497 LEU LEU THR LEU GLN PRO GLU GLN LYS PHE GLN LYS VAL SEQRES 7 A 497 LYS GLY PHE GLY GLY ALA MET THR ASP ALA ALA ALA LEU SEQRES 8 A 497 ASN ILE LEU ALA LEU SER PRO PRO ALA GLN ASN LEU LEU SEQRES 9 A 497 LEU LYS SER TYR PHE SER GLU GLU GLY ILE GLY TYR ASN SEQRES 10 A 497 ILE ILE ARG VAL PRO MET ALA SER CYS ASP PHE SER ILE SEQRES 11 A 497 ARG THR TYR THR TYR ALA ASP THR PRO ASP ASP PHE GLN SEQRES 12 A 497 LEU HIS ASN PHE SER LEU PRO GLU GLU ASP THR LYS LEU SEQRES 13 A 497 LYS ILE PRO LEU ILE HIS ARG ALA LEU GLN LEU ALA GLN SEQRES 14 A 497 ARG PRO VAL SER LEU LEU ALA SER PRO TRP THR SER PRO SEQRES 15 A 497 THR TRP LEU LYS THR ASN GLY ALA VAL ASN GLY LYS GLY SEQRES 16 A 497 SER LEU LYS GLY GLN PRO GLY ASP ILE TYR HIS GLN THR SEQRES 17 A 497 TRP ALA ARG TYR PHE VAL LYS PHE LEU ASP ALA TYR ALA SEQRES 18 A 497 GLU HIS LYS LEU GLN PHE TRP ALA VAL THR ALA GLU ASN SEQRES 19 A 497 GLU PRO SER ALA GLY LEU LEU SER GLY TYR PRO PHE GLN SEQRES 20 A 497 CYS LEU GLY PHE THR PRO GLU HIS GLN ARG ASP PHE ILE SEQRES 21 A 497 ALA ARG ASP LEU GLY PRO THR LEU ALA ASN SER THR HIS SEQRES 22 A 497 HIS ASN VAL ARG LEU LEU MET LEU ASP ASP GLN ARG LEU SEQRES 23 A 497 LEU LEU PRO HIS TRP ALA LYS VAL VAL LEU THR ASP PRO SEQRES 24 A 497 GLU ALA ALA LYS TYR VAL HIS GLY ILE ALA VAL HIS TRP SEQRES 25 A 497 TYR LEU ASP PHE LEU ALA PRO ALA LYS ALA THR LEU GLY SEQRES 26 A 497 GLU THR HIS ARG LEU PHE PRO ASN THR MET LEU PHE ALA SEQRES 27 A 497 SER GLU ALA CYS VAL GLY SER LYS PHE TRP GLU GLN SER SEQRES 28 A 497 VAL ARG LEU GLY SER TRP ASP ARG GLY MET GLN TYR SER SEQRES 29 A 497 HIS SER ILE ILE THR ASN LEU LEU TYR HIS VAL VAL GLY SEQRES 30 A 497 TRP THR ASP TRP ASN LEU ALA LEU ASN PRO GLU GLY GLY SEQRES 31 A 497 PRO ASN TRP VAL ARG ASN PHE VAL ASP SER PRO ILE ILE SEQRES 32 A 497 VAL ASP ILE THR LYS ASP THR PHE TYR LYS GLN PRO MET SEQRES 33 A 497 PHE TYR HIS LEU GLY HIS PHE SER LYS PHE ILE PRO GLU SEQRES 34 A 497 GLY SER GLN ARG VAL GLY LEU VAL ALA SER GLN LYS ASN SEQRES 35 A 497 ASP LEU ASP ALA VAL ALA LEU MET HIS PRO ASP GLY SER SEQRES 36 A 497 ALA VAL VAL VAL VAL LEU ASN ARG SER SER LYS ASP VAL SEQRES 37 A 497 PRO LEU THR ILE LYS ASP PRO ALA VAL GLY PHE LEU GLU SEQRES 38 A 497 THR ILE SER PRO GLY TYR SER ILE HIS THR TYR LEU TRP SEQRES 39 A 497 HIS ARG GLN SEQRES 1 B 497 ALA ARG PRO CYS ILE PRO LYS SER PHE GLY TYR SER SER SEQRES 2 B 497 VAL VAL CYS VAL CYS ASN ALA THR TYR CYS ASP SER PHE SEQRES 3 B 497 ASP PRO PRO THR PHE PRO ALA LEU GLY THR PHE SER ARG SEQRES 4 B 497 TYR GLU SER THR ARG SER GLY ARG ARG MET GLU LEU SER SEQRES 5 B 497 MET GLY PRO ILE GLN ALA ASN HIS THR GLY THR GLY LEU SEQRES 6 B 497 LEU LEU THR LEU GLN PRO GLU GLN LYS PHE GLN LYS VAL SEQRES 7 B 497 LYS GLY PHE GLY GLY ALA MET THR ASP ALA ALA ALA LEU SEQRES 8 B 497 ASN ILE LEU ALA LEU SER PRO PRO ALA GLN ASN LEU LEU SEQRES 9 B 497 LEU LYS SER TYR PHE SER GLU GLU GLY ILE GLY TYR ASN SEQRES 10 B 497 ILE ILE ARG VAL PRO MET ALA SER CYS ASP PHE SER ILE SEQRES 11 B 497 ARG THR TYR THR TYR ALA ASP THR PRO ASP ASP PHE GLN SEQRES 12 B 497 LEU HIS ASN PHE SER LEU PRO GLU GLU ASP THR LYS LEU SEQRES 13 B 497 LYS ILE PRO LEU ILE HIS ARG ALA LEU GLN LEU ALA GLN SEQRES 14 B 497 ARG PRO VAL SER LEU LEU ALA SER PRO TRP THR SER PRO SEQRES 15 B 497 THR TRP LEU LYS THR ASN GLY ALA VAL ASN GLY LYS GLY SEQRES 16 B 497 SER LEU LYS GLY GLN PRO GLY ASP ILE TYR HIS GLN THR SEQRES 17 B 497 TRP ALA ARG TYR PHE VAL LYS PHE LEU ASP ALA TYR ALA SEQRES 18 B 497 GLU HIS LYS LEU GLN PHE TRP ALA VAL THR ALA GLU ASN SEQRES 19 B 497 GLU PRO SER ALA GLY LEU LEU SER GLY TYR PRO PHE GLN SEQRES 20 B 497 CYS LEU GLY PHE THR PRO GLU HIS GLN ARG ASP PHE ILE SEQRES 21 B 497 ALA ARG ASP LEU GLY PRO THR LEU ALA ASN SER THR HIS SEQRES 22 B 497 HIS ASN VAL ARG LEU LEU MET LEU ASP ASP GLN ARG LEU SEQRES 23 B 497 LEU LEU PRO HIS TRP ALA LYS VAL VAL LEU THR ASP PRO SEQRES 24 B 497 GLU ALA ALA LYS TYR VAL HIS GLY ILE ALA VAL HIS TRP SEQRES 25 B 497 TYR LEU ASP PHE LEU ALA PRO ALA LYS ALA THR LEU GLY SEQRES 26 B 497 GLU THR HIS ARG LEU PHE PRO ASN THR MET LEU PHE ALA SEQRES 27 B 497 SER GLU ALA CYS VAL GLY SER LYS PHE TRP GLU GLN SER SEQRES 28 B 497 VAL ARG LEU GLY SER TRP ASP ARG GLY MET GLN TYR SER SEQRES 29 B 497 HIS SER ILE ILE THR ASN LEU LEU TYR HIS VAL VAL GLY SEQRES 30 B 497 TRP THR ASP TRP ASN LEU ALA LEU ASN PRO GLU GLY GLY SEQRES 31 B 497 PRO ASN TRP VAL ARG ASN PHE VAL ASP SER PRO ILE ILE SEQRES 32 B 497 VAL ASP ILE THR LYS ASP THR PHE TYR LYS GLN PRO MET SEQRES 33 B 497 PHE TYR HIS LEU GLY HIS PHE SER LYS PHE ILE PRO GLU SEQRES 34 B 497 GLY SER GLN ARG VAL GLY LEU VAL ALA SER GLN LYS ASN SEQRES 35 B 497 ASP LEU ASP ALA VAL ALA LEU MET HIS PRO ASP GLY SER SEQRES 36 B 497 ALA VAL VAL VAL VAL LEU ASN ARG SER SER LYS ASP VAL SEQRES 37 B 497 PRO LEU THR ILE LYS ASP PRO ALA VAL GLY PHE LEU GLU SEQRES 38 B 497 THR ILE SER PRO GLY TYR SER ILE HIS THR TYR LEU TRP SEQRES 39 B 497 HIS ARG GLN SEQRES 1 C 497 ALA ARG PRO CYS ILE PRO LYS SER PHE GLY TYR SER SER SEQRES 2 C 497 VAL VAL CYS VAL CYS ASN ALA THR TYR CYS ASP SER PHE SEQRES 3 C 497 ASP PRO PRO THR PHE PRO ALA LEU GLY THR PHE SER ARG SEQRES 4 C 497 TYR GLU SER THR ARG SER GLY ARG ARG MET GLU LEU SER SEQRES 5 C 497 MET GLY PRO ILE GLN ALA ASN HIS THR GLY THR GLY LEU SEQRES 6 C 497 LEU LEU THR LEU GLN PRO GLU GLN LYS PHE GLN LYS VAL SEQRES 7 C 497 LYS GLY PHE GLY GLY ALA MET THR ASP ALA ALA ALA LEU SEQRES 8 C 497 ASN ILE LEU ALA LEU SER PRO PRO ALA GLN ASN LEU LEU SEQRES 9 C 497 LEU LYS SER TYR PHE SER GLU GLU GLY ILE GLY TYR ASN SEQRES 10 C 497 ILE ILE ARG VAL PRO MET ALA SER CYS ASP PHE SER ILE SEQRES 11 C 497 ARG THR TYR THR TYR ALA ASP THR PRO ASP ASP PHE GLN SEQRES 12 C 497 LEU HIS ASN PHE SER LEU PRO GLU GLU ASP THR LYS LEU SEQRES 13 C 497 LYS ILE PRO LEU ILE HIS ARG ALA LEU GLN LEU ALA GLN SEQRES 14 C 497 ARG PRO VAL SER LEU LEU ALA SER PRO TRP THR SER PRO SEQRES 15 C 497 THR TRP LEU LYS THR ASN GLY ALA VAL ASN GLY LYS GLY SEQRES 16 C 497 SER LEU LYS GLY GLN PRO GLY ASP ILE TYR HIS GLN THR SEQRES 17 C 497 TRP ALA ARG TYR PHE VAL LYS PHE LEU ASP ALA TYR ALA SEQRES 18 C 497 GLU HIS LYS LEU GLN PHE TRP ALA VAL THR ALA GLU ASN SEQRES 19 C 497 GLU PRO SER ALA GLY LEU LEU SER GLY TYR PRO PHE GLN SEQRES 20 C 497 CYS LEU GLY PHE THR PRO GLU HIS GLN ARG ASP PHE ILE SEQRES 21 C 497 ALA ARG ASP LEU GLY PRO THR LEU ALA ASN SER THR HIS SEQRES 22 C 497 HIS ASN VAL ARG LEU LEU MET LEU ASP ASP GLN ARG LEU SEQRES 23 C 497 LEU LEU PRO HIS TRP ALA LYS VAL VAL LEU THR ASP PRO SEQRES 24 C 497 GLU ALA ALA LYS TYR VAL HIS GLY ILE ALA VAL HIS TRP SEQRES 25 C 497 TYR LEU ASP PHE LEU ALA PRO ALA LYS ALA THR LEU GLY SEQRES 26 C 497 GLU THR HIS ARG LEU PHE PRO ASN THR MET LEU PHE ALA SEQRES 27 C 497 SER GLU ALA CYS VAL GLY SER LYS PHE TRP GLU GLN SER SEQRES 28 C 497 VAL ARG LEU GLY SER TRP ASP ARG GLY MET GLN TYR SER SEQRES 29 C 497 HIS SER ILE ILE THR ASN LEU LEU TYR HIS VAL VAL GLY SEQRES 30 C 497 TRP THR ASP TRP ASN LEU ALA LEU ASN PRO GLU GLY GLY SEQRES 31 C 497 PRO ASN TRP VAL ARG ASN PHE VAL ASP SER PRO ILE ILE SEQRES 32 C 497 VAL ASP ILE THR LYS ASP THR PHE TYR LYS GLN PRO MET SEQRES 33 C 497 PHE TYR HIS LEU GLY HIS PHE SER LYS PHE ILE PRO GLU SEQRES 34 C 497 GLY SER GLN ARG VAL GLY LEU VAL ALA SER GLN LYS ASN SEQRES 35 C 497 ASP LEU ASP ALA VAL ALA LEU MET HIS PRO ASP GLY SER SEQRES 36 C 497 ALA VAL VAL VAL VAL LEU ASN ARG SER SER LYS ASP VAL SEQRES 37 C 497 PRO LEU THR ILE LYS ASP PRO ALA VAL GLY PHE LEU GLU SEQRES 38 C 497 THR ILE SER PRO GLY TYR SER ILE HIS THR TYR LEU TRP SEQRES 39 C 497 HIS ARG GLN SEQRES 1 D 497 ALA ARG PRO CYS ILE PRO LYS SER PHE GLY TYR SER SER SEQRES 2 D 497 VAL VAL CYS VAL CYS ASN ALA THR TYR CYS ASP SER PHE SEQRES 3 D 497 ASP PRO PRO THR PHE PRO ALA LEU GLY THR PHE SER ARG SEQRES 4 D 497 TYR GLU SER THR ARG SER GLY ARG ARG MET GLU LEU SER SEQRES 5 D 497 MET GLY PRO ILE GLN ALA ASN HIS THR GLY THR GLY LEU SEQRES 6 D 497 LEU LEU THR LEU GLN PRO GLU GLN LYS PHE GLN LYS VAL SEQRES 7 D 497 LYS GLY PHE GLY GLY ALA MET THR ASP ALA ALA ALA LEU SEQRES 8 D 497 ASN ILE LEU ALA LEU SER PRO PRO ALA GLN ASN LEU LEU SEQRES 9 D 497 LEU LYS SER TYR PHE SER GLU GLU GLY ILE GLY TYR ASN SEQRES 10 D 497 ILE ILE ARG VAL PRO MET ALA SER CYS ASP PHE SER ILE SEQRES 11 D 497 ARG THR TYR THR TYR ALA ASP THR PRO ASP ASP PHE GLN SEQRES 12 D 497 LEU HIS ASN PHE SER LEU PRO GLU GLU ASP THR LYS LEU SEQRES 13 D 497 LYS ILE PRO LEU ILE HIS ARG ALA LEU GLN LEU ALA GLN SEQRES 14 D 497 ARG PRO VAL SER LEU LEU ALA SER PRO TRP THR SER PRO SEQRES 15 D 497 THR TRP LEU LYS THR ASN GLY ALA VAL ASN GLY LYS GLY SEQRES 16 D 497 SER LEU LYS GLY GLN PRO GLY ASP ILE TYR HIS GLN THR SEQRES 17 D 497 TRP ALA ARG TYR PHE VAL LYS PHE LEU ASP ALA TYR ALA SEQRES 18 D 497 GLU HIS LYS LEU GLN PHE TRP ALA VAL THR ALA GLU ASN SEQRES 19 D 497 GLU PRO SER ALA GLY LEU LEU SER GLY TYR PRO PHE GLN SEQRES 20 D 497 CYS LEU GLY PHE THR PRO GLU HIS GLN ARG ASP PHE ILE SEQRES 21 D 497 ALA ARG ASP LEU GLY PRO THR LEU ALA ASN SER THR HIS SEQRES 22 D 497 HIS ASN VAL ARG LEU LEU MET LEU ASP ASP GLN ARG LEU SEQRES 23 D 497 LEU LEU PRO HIS TRP ALA LYS VAL VAL LEU THR ASP PRO SEQRES 24 D 497 GLU ALA ALA LYS TYR VAL HIS GLY ILE ALA VAL HIS TRP SEQRES 25 D 497 TYR LEU ASP PHE LEU ALA PRO ALA LYS ALA THR LEU GLY SEQRES 26 D 497 GLU THR HIS ARG LEU PHE PRO ASN THR MET LEU PHE ALA SEQRES 27 D 497 SER GLU ALA CYS VAL GLY SER LYS PHE TRP GLU GLN SER SEQRES 28 D 497 VAL ARG LEU GLY SER TRP ASP ARG GLY MET GLN TYR SER SEQRES 29 D 497 HIS SER ILE ILE THR ASN LEU LEU TYR HIS VAL VAL GLY SEQRES 30 D 497 TRP THR ASP TRP ASN LEU ALA LEU ASN PRO GLU GLY GLY SEQRES 31 D 497 PRO ASN TRP VAL ARG ASN PHE VAL ASP SER PRO ILE ILE SEQRES 32 D 497 VAL ASP ILE THR LYS ASP THR PHE TYR LYS GLN PRO MET SEQRES 33 D 497 PHE TYR HIS LEU GLY HIS PHE SER LYS PHE ILE PRO GLU SEQRES 34 D 497 GLY SER GLN ARG VAL GLY LEU VAL ALA SER GLN LYS ASN SEQRES 35 D 497 ASP LEU ASP ALA VAL ALA LEU MET HIS PRO ASP GLY SER SEQRES 36 D 497 ALA VAL VAL VAL VAL LEU ASN ARG SER SER LYS ASP VAL SEQRES 37 D 497 PRO LEU THR ILE LYS ASP PRO ALA VAL GLY PHE LEU GLU SEQRES 38 D 497 THR ILE SER PRO GLY TYR SER ILE HIS THR TYR LEU TRP SEQRES 39 D 497 HIS ARG GLN MODRES 2NT1 ASN A 19 ASN GLYCOSYLATION SITE MODRES 2NT1 ASN B 19 ASN GLYCOSYLATION SITE MODRES 2NT1 ASN C 19 ASN GLYCOSYLATION SITE MODRES 2NT1 ASN D 19 ASN GLYCOSYLATION SITE HET NAG A 498 14 HET PO4 A 499 5 HET PO4 A 500 5 HET PO4 A 501 5 HET PO4 A 502 5 HET PO4 A 503 5 HET PO4 A 504 5 HET PO4 A 505 5 HET PO4 A 506 5 HET PO4 A 507 5 HET PO4 A 508 5 HET PO4 A 509 5 HET PO4 A 510 5 HET PO4 A 511 5 HET PO4 A 512 5 HET PO4 A 513 5 HET PO4 A 514 5 HET PO4 A 515 5 HET PO4 A 516 5 HET PO4 A 517 5 HET PO4 A 518 5 HET PO4 A 519 5 HET NAG B 498 14 HET PO4 B 499 5 HET PO4 B 500 5 HET PO4 B 501 5 HET PO4 B 502 5 HET PO4 B 503 5 HET PO4 B 504 5 HET PO4 B 505 5 HET PO4 B 506 5 HET PO4 B 507 5 HET PO4 B 508 5 HET PO4 B 509 5 HET PO4 B 510 5 HET PO4 B 511 5 HET PO4 B 512 5 HET PO4 B 513 5 HET PO4 B 514 5 HET PO4 B 515 5 HET PO4 B 516 5 HET NAG C 498 14 HET PO4 C 499 5 HET PO4 C 500 5 HET PO4 C 501 5 HET PO4 C 502 5 HET PO4 C 503 5 HET PO4 C 504 5 HET PO4 C 505 5 HET PO4 C 506 5 HET PO4 C 507 5 HET PO4 C 508 5 HET PO4 C 509 5 HET PO4 C 510 5 HET PO4 C 511 5 HET PO4 C 512 5 HET PO4 C 513 5 HET PO4 C 514 5 HET PO4 C 515 5 HET PO4 C 516 5 HET PO4 C 517 5 HET PO4 C 518 5 HET PO4 C 519 5 HET PO4 C 520 5 HET PO4 C 521 5 HET NAG D 498 14 HET PO4 D 499 5 HET PO4 D 500 5 HET PO4 D 501 5 HET PO4 D 502 5 HET PO4 D 503 5 HET PO4 D 504 5 HET PO4 D 505 5 HET PO4 D 506 5 HET PO4 D 507 5 HET PO4 D 508 5 HET PO4 D 509 5 HET PO4 D 510 5 HET PO4 D 511 5 HET PO4 D 512 5 HET PO4 D 513 5 HET PO4 D 514 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM PO4 PHOSPHATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 4(C8 H15 N O6) FORMUL 6 PO4 78(O4 P 3-) FORMUL 87 HOH *1344(H2 O) HELIX 1 1 THR A 86 ALA A 95 1 10 HELIX 2 2 SER A 97 SER A 110 1 14 HELIX 3 3 PRO A 150 LEU A 156 1 7 HELIX 4 4 LEU A 156 ALA A 168 1 13 HELIX 5 5 PRO A 182 LYS A 186 5 5 HELIX 6 6 ASP A 203 HIS A 223 1 21 HELIX 7 7 SER A 237 LEU A 241 5 5 HELIX 8 8 THR A 252 ASP A 263 1 12 HELIX 9 9 ASP A 263 ASN A 270 1 8 HELIX 10 10 LEU A 286 LEU A 288 5 3 HELIX 11 11 PRO A 289 THR A 297 1 9 HELIX 12 12 ASP A 298 LYS A 303 1 6 HELIX 13 13 LEU A 314 ALA A 318 5 5 HELIX 14 14 PRO A 319 PHE A 331 1 13 HELIX 15 15 SER A 356 TYR A 373 1 18 HELIX 16 16 GLN A 414 LYS A 425 1 12 HELIX 17 17 THR B 86 ALA B 95 1 10 HELIX 18 18 SER B 97 SER B 110 1 14 HELIX 19 19 PRO B 150 LYS B 155 1 6 HELIX 20 20 LEU B 156 ALA B 168 1 13 HELIX 21 21 PRO B 182 LYS B 186 5 5 HELIX 22 22 ASP B 203 HIS B 223 1 21 HELIX 23 23 GLU B 235 LEU B 241 5 7 HELIX 24 24 THR B 252 ASP B 263 1 12 HELIX 25 25 ASP B 263 ASN B 270 1 8 HELIX 26 26 LEU B 286 LEU B 288 5 3 HELIX 27 27 PRO B 289 THR B 297 1 9 HELIX 28 28 ASP B 298 LYS B 303 1 6 HELIX 29 29 THR B 323 PHE B 331 1 9 HELIX 30 30 SER B 356 TYR B 373 1 18 HELIX 31 31 ILE B 406 ASP B 409 5 4 HELIX 32 32 GLN B 414 LYS B 425 1 12 HELIX 33 33 THR C 86 LEU C 94 1 9 HELIX 34 34 SER C 97 SER C 110 1 14 HELIX 35 35 PRO C 150 LEU C 156 1 7 HELIX 36 36 LEU C 156 ALA C 168 1 13 HELIX 37 37 PRO C 182 LYS C 186 5 5 HELIX 38 38 ASP C 203 HIS C 223 1 21 HELIX 39 39 GLU C 235 LEU C 241 5 7 HELIX 40 40 THR C 252 ASP C 263 1 12 HELIX 41 41 ASP C 263 ASN C 270 1 8 HELIX 42 42 LEU C 286 LEU C 288 5 3 HELIX 43 43 PRO C 289 THR C 297 1 9 HELIX 44 44 ASP C 298 LYS C 303 1 6 HELIX 45 45 LEU C 314 ALA C 318 5 5 HELIX 46 46 THR C 323 PHE C 331 1 9 HELIX 47 47 SER C 356 TYR C 373 1 18 HELIX 48 48 GLN C 414 LYS C 425 1 12 HELIX 49 49 THR D 86 ALA D 95 1 10 HELIX 50 50 SER D 97 SER D 110 1 14 HELIX 51 51 PRO D 150 LYS D 155 1 6 HELIX 52 52 LEU D 156 ALA D 168 1 13 HELIX 53 53 PRO D 182 LYS D 186 5 5 HELIX 54 54 ASP D 203 HIS D 223 1 21 HELIX 55 55 SER D 237 LEU D 241 5 5 HELIX 56 56 THR D 252 ASP D 263 1 12 HELIX 57 57 ASP D 263 ASN D 270 1 8 HELIX 58 58 LEU D 286 LEU D 288 5 3 HELIX 59 59 PRO D 289 THR D 297 1 9 HELIX 60 60 ASP D 298 LYS D 303 1 6 HELIX 61 61 THR D 323 PHE D 331 1 9 HELIX 62 62 SER D 356 TYR D 373 1 18 HELIX 63 63 ILE D 406 ASP D 409 5 4 HELIX 64 64 GLN D 414 LYS D 425 1 12 SHEET 1 A 5 PRO A 6 LYS A 7 0 SHEET 2 A 5 VAL A 15 CYS A 18 -1 O VAL A 15 N LYS A 7 SHEET 3 A 5 THR A 410 LYS A 413 -1 O PHE A 411 N CYS A 18 SHEET 4 A 5 ILE A 402 ASP A 405 -1 N ILE A 403 O TYR A 412 SHEET 5 A 5 ALA A 384 LEU A 385 1 N LEU A 385 O VAL A 404 SHEET 1 B 9 GLU A 50 PRO A 55 0 SHEET 2 B 9 THR A 36 THR A 43 -1 N ARG A 39 O SER A 52 SHEET 3 B 9 SER A 488 TRP A 494 -1 O THR A 491 N TYR A 40 SHEET 4 B 9 ALA A 456 ASN A 462 -1 N VAL A 458 O TYR A 492 SHEET 5 B 9 ASP A 445 MET A 450 -1 N ASP A 445 O LEU A 461 SHEET 6 B 9 GLN A 432 ALA A 438 -1 N GLN A 432 O MET A 450 SHEET 7 B 9 LEU A 65 LYS A 77 -1 N THR A 68 O VAL A 437 SHEET 8 B 9 VAL A 468 ASP A 474 1 O LYS A 473 N LEU A 69 SHEET 9 B 9 GLY A 478 SER A 484 -1 O SER A 484 N VAL A 468 SHEET 1 C 9 GLY A 80 ALA A 84 0 SHEET 2 C 9 ILE A 118 MET A 123 1 O ARG A 120 N GLY A 83 SHEET 3 C 9 SER A 173 PRO A 178 1 O LEU A 175 N VAL A 121 SHEET 4 C 9 ALA A 229 THR A 231 1 O THR A 231 N ALA A 176 SHEET 5 C 9 ARG A 277 GLN A 284 1 O ARG A 277 N VAL A 230 SHEET 6 C 9 GLY A 307 HIS A 311 1 O ALA A 309 N MET A 280 SHEET 7 C 9 MET A 335 ALA A 341 1 O PHE A 337 N VAL A 310 SHEET 8 C 9 VAL A 375 ASN A 382 1 O GLY A 377 N ALA A 338 SHEET 9 C 9 GLY A 80 ALA A 84 1 N GLY A 82 O ASP A 380 SHEET 1 D 4 PRO B 6 LYS B 7 0 SHEET 2 D 4 VAL B 15 CYS B 18 -1 O VAL B 15 N LYS B 7 SHEET 3 D 4 THR B 410 LYS B 413 -1 O PHE B 411 N CYS B 18 SHEET 4 D 4 ILE B 402 ASP B 405 -1 N ASP B 405 O THR B 410 SHEET 1 E 9 GLU B 50 PRO B 55 0 SHEET 2 E 9 THR B 36 THR B 43 -1 N ARG B 39 O SER B 52 SHEET 3 E 9 SER B 488 TRP B 494 -1 O LEU B 493 N SER B 38 SHEET 4 E 9 ALA B 456 ASN B 462 -1 N VAL B 458 O TYR B 492 SHEET 5 E 9 LEU B 444 MET B 450 -1 N ASP B 445 O LEU B 461 SHEET 6 E 9 GLN B 432 ALA B 438 -1 N GLN B 432 O MET B 450 SHEET 7 E 9 LEU B 65 LYS B 77 -1 N THR B 68 O VAL B 437 SHEET 8 E 9 VAL B 468 ASP B 474 1 O LYS B 473 N LEU B 69 SHEET 9 E 9 GLY B 478 SER B 484 -1 O GLY B 478 N ASP B 474 SHEET 1 F 9 GLY B 80 ALA B 84 0 SHEET 2 F 9 ILE B 118 MET B 123 1 O ARG B 120 N GLY B 83 SHEET 3 F 9 SER B 173 PRO B 178 1 O LEU B 175 N VAL B 121 SHEET 4 F 9 ALA B 229 THR B 231 1 O THR B 231 N ALA B 176 SHEET 5 F 9 ARG B 277 GLN B 284 1 O LEU B 279 N VAL B 230 SHEET 6 F 9 GLY B 307 TYR B 313 1 O ALA B 309 N MET B 280 SHEET 7 F 9 MET B 335 CYS B 342 1 O PHE B 337 N VAL B 310 SHEET 8 F 9 VAL B 375 ASN B 382 1 O VAL B 376 N LEU B 336 SHEET 9 F 9 GLY B 80 ALA B 84 1 N GLY B 82 O ASP B 380 SHEET 1 G 4 PRO C 6 LYS C 7 0 SHEET 2 G 4 VAL C 15 CYS C 18 -1 O VAL C 15 N LYS C 7 SHEET 3 G 4 THR C 410 LYS C 413 -1 O PHE C 411 N CYS C 18 SHEET 4 G 4 ILE C 402 ASP C 405 -1 N ASP C 405 O THR C 410 SHEET 1 H 9 GLU C 50 PRO C 55 0 SHEET 2 H 9 THR C 36 THR C 43 -1 N ARG C 39 O SER C 52 SHEET 3 H 9 SER C 488 TRP C 494 -1 O THR C 491 N TYR C 40 SHEET 4 H 9 ALA C 456 ASN C 462 -1 N VAL C 458 O TYR C 492 SHEET 5 H 9 ASP C 445 MET C 450 -1 N LEU C 449 O VAL C 457 SHEET 6 H 9 GLN C 432 ALA C 438 -1 N GLN C 432 O MET C 450 SHEET 7 H 9 LEU C 65 LYS C 77 -1 N GLN C 76 O ARG C 433 SHEET 8 H 9 VAL C 468 ASP C 474 1 O LYS C 473 N LEU C 69 SHEET 9 H 9 GLY C 478 SER C 484 -1 O GLY C 478 N ASP C 474 SHEET 1 I 9 GLY C 80 ALA C 84 0 SHEET 2 I 9 ILE C 118 MET C 123 1 O ARG C 120 N GLY C 83 SHEET 3 I 9 SER C 173 PRO C 178 1 O LEU C 175 N VAL C 121 SHEET 4 I 9 ALA C 229 THR C 231 1 O THR C 231 N ALA C 176 SHEET 5 I 9 ARG C 277 GLN C 284 1 O LEU C 279 N VAL C 230 SHEET 6 I 9 GLY C 307 HIS C 311 1 O ALA C 309 N MET C 280 SHEET 7 I 9 MET C 335 GLU C 340 1 O MET C 335 N ILE C 308 SHEET 8 I 9 VAL C 375 ASN C 382 1 O GLY C 377 N ALA C 338 SHEET 9 I 9 GLY C 80 ALA C 84 1 N GLY C 82 O ASP C 380 SHEET 1 J 4 PRO D 6 LYS D 7 0 SHEET 2 J 4 VAL D 15 CYS D 18 -1 O VAL D 15 N LYS D 7 SHEET 3 J 4 THR D 410 LYS D 413 -1 O PHE D 411 N CYS D 18 SHEET 4 J 4 ILE D 402 ASP D 405 -1 N ILE D 403 O TYR D 412 SHEET 1 K 9 GLU D 50 PRO D 55 0 SHEET 2 K 9 THR D 36 THR D 43 -1 N ARG D 39 O SER D 52 SHEET 3 K 9 SER D 488 TRP D 494 -1 O LEU D 493 N SER D 38 SHEET 4 K 9 ALA D 456 ASN D 462 -1 N ASN D 462 O SER D 488 SHEET 5 K 9 LEU D 444 MET D 450 -1 N ASP D 445 O LEU D 461 SHEET 6 K 9 GLN D 432 ALA D 438 -1 N GLN D 432 O MET D 450 SHEET 7 K 9 LEU D 65 LYS D 77 -1 N PHE D 75 O ARG D 433 SHEET 8 K 9 VAL D 468 ASP D 474 1 O LYS D 473 N LEU D 67 SHEET 9 K 9 GLY D 478 SER D 484 -1 O GLY D 478 N ASP D 474 SHEET 1 L 9 GLY D 80 ALA D 84 0 SHEET 2 L 9 ILE D 118 MET D 123 1 O ARG D 120 N GLY D 83 SHEET 3 L 9 SER D 173 PRO D 178 1 O LEU D 175 N VAL D 121 SHEET 4 L 9 ALA D 229 THR D 231 1 O THR D 231 N ALA D 176 SHEET 5 L 9 ARG D 277 GLN D 284 1 O LEU D 279 N VAL D 230 SHEET 6 L 9 GLY D 307 TYR D 313 1 O ALA D 309 N MET D 280 SHEET 7 L 9 MET D 335 CYS D 342 1 O MET D 335 N ILE D 308 SHEET 8 L 9 VAL D 375 ASN D 382 1 O VAL D 376 N LEU D 336 SHEET 9 L 9 GLY D 80 ALA D 84 1 N GLY D 82 O ASP D 380 SSBOND 1 CYS A 4 CYS A 16 1555 1555 2.09 SSBOND 2 CYS A 18 CYS A 23 1555 1555 2.15 SSBOND 3 CYS B 4 CYS B 16 1555 1555 2.15 SSBOND 4 CYS B 18 CYS B 23 1555 1555 2.20 SSBOND 5 CYS C 4 CYS C 16 1555 1555 2.11 SSBOND 6 CYS C 18 CYS C 23 1555 1555 2.14 SSBOND 7 CYS D 4 CYS D 16 1555 1555 2.15 SSBOND 8 CYS D 18 CYS D 23 1555 1555 2.21 LINK ND2 ASN A 19 C1 NAG A 498 1555 1555 1.48 LINK ND2 ASN B 19 C1 NAG B 498 1555 1555 1.46 LINK ND2 ASN C 19 C1 NAG C 498 1555 1555 1.46 LINK ND2 ASN D 19 C1 NAG D 498 1555 1555 1.46 CISPEP 1 LEU A 288 PRO A 289 0 1.88 CISPEP 2 GLY A 344 SER A 345 0 -9.35 CISPEP 3 GLY A 390 PRO A 391 0 -0.87 CISPEP 4 GLY B 62 THR B 63 0 18.52 CISPEP 5 LEU B 288 PRO B 289 0 -0.99 CISPEP 6 GLY B 390 PRO B 391 0 0.41 CISPEP 7 LEU C 288 PRO C 289 0 6.00 CISPEP 8 TYR C 313 LEU C 314 0 12.12 CISPEP 9 VAL C 343 GLY C 344 0 26.37 CISPEP 10 GLY C 390 PRO C 391 0 -0.65 CISPEP 11 LEU D 288 PRO D 289 0 0.40 CISPEP 12 GLY D 390 PRO D 391 0 -1.81 CRYST1 110.185 91.792 153.036 90.00 110.91 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009076 0.000000 0.003467 0.00000 SCALE2 0.000000 0.010894 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006995 0.00000