HEADER TRANSFERASE 07-NOV-06 2NT8 TITLE ATP BOUND AT THE ACTIVE SITE OF A PDUO TYPE ATP:CO(I)RRINOID TITLE 2 ADENOSYLTRANSFERASE FROM LACTOBACILLUS REUTERI COMPND MOL_ID: 1; COMPND 2 MOLECULE: COBALAMIN ADENOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 EC: 2.5.1.17; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: LACTOBACILLUS REUTERI; SOURCE 3 ORGANISM_TAXID: 1598; SOURCE 4 STRAIN: CRL1098; SOURCE 5 GENE: PDUO; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B KEYWDS ATP BINDING, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR M.ST-MAURICE,P.E.MERA,M.P.TARANTO,F.SESMA,J.C.ESCALANTE-SEMERENA, AUTHOR 2 I.RAYMENT REVDAT 6 30-AUG-23 2NT8 1 REMARK LINK REVDAT 5 18-OCT-17 2NT8 1 REMARK REVDAT 4 13-JUL-11 2NT8 1 VERSN REVDAT 3 24-FEB-09 2NT8 1 VERSN REVDAT 2 01-MAY-07 2NT8 1 JRNL REVDAT 1 21-NOV-06 2NT8 0 JRNL AUTH M.ST MAURICE,P.E.MERA,M.P.TARANTO,F.SESMA, JRNL AUTH 2 J.C.ESCALANTE-SEMERENA,I.RAYMENT JRNL TITL STRUCTURAL CHARACTERIZATION OF THE ACTIVE SITE OF THE JRNL TITL 2 PDUO-TYPE ATP:CO(I)RRINOID ADENOSYLTRANSFERASE FROM JRNL TITL 3 LACTOBACILLUS REUTERI. JRNL REF J.BIOL.CHEM. V. 282 2596 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17121823 JRNL DOI 10.1074/JBC.M609557200 REMARK 2 REMARK 2 RESOLUTION. 1.68 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.68 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 25595 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.175 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.204 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1305 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.68 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.72 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1762 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2150 REMARK 3 BIN FREE R VALUE SET COUNT : 85 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1440 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 49 REMARK 3 SOLVENT ATOMS : 141 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.093 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.093 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.057 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.639 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.966 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.949 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1612 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2211 ; 1.341 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 208 ; 5.209 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 79 ;32.427 ;24.557 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 275 ;12.146 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;14.683 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 243 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1229 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 792 ; 0.208 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1141 ; 0.304 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 120 ; 0.138 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 84 ; 0.198 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 47 ; 0.134 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 970 ; 1.056 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1553 ; 1.687 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 723 ; 2.654 ; 4.500 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 647 ; 3.699 ; 6.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NT8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040272. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25595 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.680 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 9.500 REMARK 200 R MERGE (I) : 0.04600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.68 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.4 REMARK 200 DATA REDUNDANCY IN SHELL : 6.80 REMARK 200 R MERGE FOR SHELL (I) : 0.23400 REMARK 200 R SYM FOR SHELL (I) : 0.23400 REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: PDB ENTRY 1NOG REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 44.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.85 M AMMONIUM SULFATE, 50 MM REMARK 280 MAGNESIUM CHLORIDE, 150 MM SODIUM CHLORIDE, 1.5 MM ATP, 4 MM REMARK 280 HYDROXOCOBALAMIN, PH 8.5, BATCH, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z,-X,-Y REMARK 290 7555 -Z,-X,Y REMARK 290 8555 -Z,X,-Y REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z,-X REMARK 290 11555 Y,-Z,-X REMARK 290 12555 -Y,-Z,X REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 15555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 16555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z+1/2,-X+1/2,-Y+1/2 REMARK 290 19555 -Z+1/2,-X+1/2,Y+1/2 REMARK 290 20555 -Z+1/2,X+1/2,-Y+1/2 REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z+1/2,-X+1/2 REMARK 290 23555 Y+1/2,-Z+1/2,-X+1/2 REMARK 290 24555 -Y+1/2,-Z+1/2,X+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 55.30450 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.30450 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 55.30450 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 55.30450 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 55.30450 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 55.30450 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 55.30450 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 55.30450 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 55.30450 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 55.30450 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 55.30450 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 55.30450 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 55.30450 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 55.30450 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 55.30450 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 55.30450 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 55.30450 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 55.30450 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 55.30450 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 55.30450 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 55.30450 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 55.30450 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 55.30450 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 55.30450 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 55.30450 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 55.30450 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 55.30450 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 55.30450 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 55.30450 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 55.30450 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 55.30450 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 55.30450 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 55.30450 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 55.30450 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 55.30450 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 55.30450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBY IS A TRIMER GENERATED FROM THE REMARK 300 MONOMER IN THE ASYMMETRIC UNIT BY SYMMETRY OPERATIONS: REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 14280 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20600 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -135.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 S SO4 A 601 LIES ON A SPECIAL POSITION. REMARK 375 O1 SO4 A 601 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1029 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1061 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -34 REMARK 465 GLY A -33 REMARK 465 SER A -32 REMARK 465 SER A -31 REMARK 465 HIS A -30 REMARK 465 HIS A -29 REMARK 465 HIS A -28 REMARK 465 HIS A -27 REMARK 465 HIS A -26 REMARK 465 HIS A -25 REMARK 465 SER A -24 REMARK 465 SER A -23 REMARK 465 GLY A -22 REMARK 465 LEU A -21 REMARK 465 VAL A -20 REMARK 465 PRO A -19 REMARK 465 ARG A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 MET A -14 REMARK 465 ALA A -13 REMARK 465 SER A -12 REMARK 465 MET A -11 REMARK 465 THR A -10 REMARK 465 GLY A -9 REMARK 465 GLY A -8 REMARK 465 GLN A -7 REMARK 465 GLN A -6 REMARK 465 MET A -5 REMARK 465 GLY A -4 REMARK 465 ARG A -3 REMARK 465 ASP A -2 REMARK 465 ARG A -1 REMARK 465 SER A 0 REMARK 465 VAL A 1 REMARK 465 SER A 183 REMARK 465 LYS A 184 REMARK 465 ASP A 185 REMARK 465 VAL A 186 REMARK 465 PHE A 187 REMARK 465 ARG A 188 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 14 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 60 CD OE1 OE2 REMARK 470 GLU A 80 CB CG CD OE1 OE2 REMARK 470 ARG A 81 CB CG CD NE CZ NH1 NH2 REMARK 470 LYS A 85 CG CD CE NZ REMARK 470 GLN A 104 CD OE1 NE2 REMARK 470 LYS A 110 CE NZ REMARK 470 LYS A 111 CE NZ REMARK 470 GLN A 146 CD OE1 NE2 REMARK 470 ARG A 181 CD NE CZ NH1 NH2 REMARK 470 ASN A 182 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 6 -1.03 73.42 REMARK 500 ILE A 15 -159.23 -111.79 REMARK 500 LYS A 110 -120.67 93.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL A 109 LYS A 110 32.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 998 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 156 OD1 REMARK 620 2 ATP A 999 O1B 93.6 REMARK 620 3 ATP A 999 O3G 94.6 87.3 REMARK 620 4 ATP A 999 O1A 169.7 93.2 93.5 REMARK 620 5 HOH A1003 O 81.9 88.4 174.3 90.5 REMARK 620 6 HOH A1039 O 87.6 176.0 88.7 86.2 95.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 998 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ATP A 999 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 889 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 888 DBREF 2NT8 A 2 188 UNP Q2BVV3 Q2BVV3_LACRE 2 188 SEQADV 2NT8 MET A -34 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 GLY A -33 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 SER A -32 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 SER A -31 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 HIS A -30 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 HIS A -29 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 HIS A -28 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 HIS A -27 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 HIS A -26 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 HIS A -25 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 SER A -24 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 SER A -23 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 GLY A -22 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 LEU A -21 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 VAL A -20 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 PRO A -19 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 ARG A -18 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 GLY A -17 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 SER A -16 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 HIS A -15 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 MET A -14 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 ALA A -13 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 SER A -12 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 MET A -11 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 THR A -10 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 GLY A -9 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 GLY A -8 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 GLN A -7 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 GLN A -6 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 GLY A -4 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 ARG A -3 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 ASP A -2 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 ARG A -1 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 SER A 0 UNP Q2BVV3 CLONING ARTIFACT SEQADV 2NT8 VAL A 1 UNP Q2BVV3 CLONING ARTIFACT SEQRES 1 A 223 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 223 LEU VAL PRO ARG GLY SER HIS MET ALA SER MET THR GLY SEQRES 3 A 223 GLY GLN GLN MET GLY ARG ASP ARG SER VAL LYS ILE TYR SEQRES 4 A 223 THR LYS ASN GLY ASP LYS GLY GLN THR ARG ILE ILE GLY SEQRES 5 A 223 LYS GLN ILE LEU TYR LYS ASN ASP PRO ARG VAL ALA ALA SEQRES 6 A 223 TYR GLY GLU VAL ASP GLU LEU ASN SER TRP VAL GLY TYR SEQRES 7 A 223 THR LYS SER LEU ILE ASN SER HIS THR GLN VAL LEU SER SEQRES 8 A 223 ASN GLU LEU GLU GLU ILE GLN GLN LEU LEU PHE ASP CYS SEQRES 9 A 223 GLY HIS ASP LEU ALA THR PRO ALA ASP ASP GLU ARG HIS SEQRES 10 A 223 SER PHE LYS PHE LYS GLN GLU GLN PRO THR VAL TRP LEU SEQRES 11 A 223 GLU GLU LYS ILE ASP ASN TYR THR GLN VAL VAL PRO ALA SEQRES 12 A 223 VAL LYS LYS PHE ILE LEU PRO GLY GLY THR GLN LEU ALA SEQRES 13 A 223 SER ALA LEU HIS VAL ALA ARG THR ILE THR ARG ARG ALA SEQRES 14 A 223 GLU ARG GLN ILE VAL GLN LEU MET ARG GLU GLU GLN ILE SEQRES 15 A 223 ASN GLN ASP VAL LEU ILE PHE ILE ASN ARG LEU SER ASP SEQRES 16 A 223 TYR PHE PHE ALA ALA ALA ARG TYR ALA ASN TYR LEU GLU SEQRES 17 A 223 GLN GLN PRO ASP MET LEU TYR ARG ASN SER LYS ASP VAL SEQRES 18 A 223 PHE ARG HET MG A 998 1 HET SO4 A 601 5 HET ATP A 999 31 HET GOL A 889 6 HET GOL A 888 6 HETNAM MG MAGNESIUM ION HETNAM SO4 SULFATE ION HETNAM ATP ADENOSINE-5'-TRIPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 MG MG 2+ FORMUL 3 SO4 O4 S 2- FORMUL 4 ATP C10 H16 N5 O13 P3 FORMUL 5 GOL 2(C3 H8 O3) FORMUL 7 HOH *141(H2 O) HELIX 1 1 ASP A 25 SER A 46 1 22 HELIX 2 2 LEU A 47 ILE A 48 5 2 HELIX 3 3 ASN A 49 VAL A 54 5 6 HELIX 4 4 LEU A 55 ALA A 74 1 20 HELIX 5 5 GLN A 88 VAL A 106 1 19 HELIX 6 6 THR A 118 ARG A 143 1 26 HELIX 7 7 ASN A 148 GLU A 173 1 26 SHEET 1 A 2 GLN A 12 ARG A 14 0 SHEET 2 A 2 ILE A 20 TYR A 22 -1 O LEU A 21 N THR A 13 SHEET 1 B 2 ILE A 113 LEU A 114 0 SHEET 2 B 2 MET A 178 LEU A 179 -1 O MET A 178 N LEU A 114 LINK OD1 ASN A 156 MG MG A 998 5555 1555 2.12 LINK MG MG A 998 O1B ATP A 999 1555 1555 2.04 LINK MG MG A 998 O3G ATP A 999 1555 1555 2.05 LINK MG MG A 998 O1A ATP A 999 1555 1555 2.02 LINK MG MG A 998 O HOH A1003 1555 5555 2.13 LINK MG MG A 998 O HOH A1039 1555 1555 2.09 SITE 1 AC1 4 ASN A 156 ATP A 999 HOH A1003 HOH A1039 SITE 1 AC2 3 TRP A 40 ILE A 130 HOH A1140 SITE 1 AC3 23 THR A 5 LYS A 6 ASN A 7 GLY A 8 SITE 2 AC3 23 GLN A 12 THR A 13 ARG A 14 LYS A 23 SITE 3 AC3 23 VAL A 28 TYR A 31 GLY A 32 ARG A 132 SITE 4 AC3 23 GLU A 135 ARG A 136 ASN A 156 GOL A 889 SITE 5 AC3 23 MG A 998 HOH A1003 HOH A1013 HOH A1033 SITE 6 AC3 23 HOH A1039 HOH A1058 HOH A1118 SITE 1 AC4 9 ASN A 7 GLY A 8 GLN A 12 THR A 13 SITE 2 AC4 9 ILE A 20 ATP A 999 HOH A1118 HOH A1121 SITE 3 AC4 9 HOH A1139 SITE 1 AC5 6 GLN A 19 LEU A 21 ARG A 27 GLU A 145 SITE 2 AC5 6 HOH A1010 HOH A1100 CRYST1 110.609 110.609 110.609 90.00 90.00 90.00 I 2 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009041 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009041 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009041 0.00000