HEADER OXIDOREDUCTASE 08-NOV-06 2NTV TITLE MYCOBACTERIUM LEPRAE INHA BOUND WITH PTH-NAD ADDUCT COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENOYL-[ACP] REDUCTASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MYCOBACTERIUM LEPRAE; SOURCE 3 ORGANISM_TAXID: 1769; SOURCE 4 GENE: INHA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET30B KEYWDS LEPROSY, INHA, PROTHIONAMIDE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR F.WANG,J.C.SACCHETTINI REVDAT 6 30-AUG-23 2NTV 1 COMPND REMARK HETNAM REVDAT 5 18-OCT-17 2NTV 1 REMARK REVDAT 4 13-JUL-11 2NTV 1 VERSN REVDAT 3 24-FEB-09 2NTV 1 VERSN REVDAT 2 06-FEB-07 2NTV 1 JRNL REVDAT 1 30-JAN-07 2NTV 0 JRNL AUTH F.WANG,R.LANGLEY,G.GULTEN,L.G.DOVER,G.S.BESRA,W.R.JACOBS, JRNL AUTH 2 J.C.SACCHETTINI JRNL TITL MECHANISM OF THIOAMIDE DRUG ACTION AGAINST TUBERCULOSIS AND JRNL TITL 2 LEPROSY. JRNL REF J.EXP.MED. V. 204 73 2007 JRNL REFN ISSN 0022-1007 JRNL PMID 17227913 JRNL DOI 10.1084/JEM.20062100 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 49775 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.220 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2527 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3186 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 93.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.3040 REMARK 3 BIN FREE R VALUE SET COUNT : 193 REMARK 3 BIN FREE R VALUE : 0.3590 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4016 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 110 REMARK 3 SOLVENT ATOMS : 203 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 40.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.02000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.02000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.178 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.158 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4208 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5726 ; 2.146 ; 2.000 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 534 ; 7.345 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 162 ;35.943 ;24.321 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 680 ;20.485 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;22.179 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 672 ; 0.319 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3214 ; 0.017 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2211 ; 0.258 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2889 ; 0.313 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 224 ; 0.208 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 129 ; 0.219 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.150 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2648 ; 0.648 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4224 ; 1.224 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1560 ; 1.948 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1502 ; 3.092 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NTV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040295. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 121 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49856 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.90 REMARK 200 R MERGE FOR SHELL (I) : 0.56900 REMARK 200 R SYM FOR SHELL (I) : 0.88000 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: PDB ENTRY 1ZID REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 66.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.72 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 12% MPD, 4% DMSO, 0.1M HEPES, PH 7.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 45.61600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 93.31100 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 50.00950 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 93.31100 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 45.61600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 50.00950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 45.61600 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.00950 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 93.31100 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.00950 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 45.61600 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 93.31100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TETRAMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 20370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34350 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -93.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 -50.00950 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 458 LIES ON A SPECIAL POSITION. REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 305 O HOH A 421 1.94 REMARK 500 O HOH A 416 O HOH A 423 1.97 REMARK 500 O HOH B 467 O HOH B 476 1.99 REMARK 500 O GLY B 204 O PHE B 207 1.99 REMARK 500 O HOH B 468 O HOH B 470 2.03 REMARK 500 OG SER A 265 O HOH A 413 2.03 REMARK 500 N ASP A 42 O HOH A 417 2.05 REMARK 500 OG SER B 265 O HOH B 467 2.10 REMARK 500 O ALA B 201 O GLY B 205 2.14 REMARK 500 N LEU B 4 O HOH B 473 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 PHE B 41 CA PHE B 41 CB -0.338 REMARK 500 PHE B 41 CB PHE B 41 CG 0.460 REMARK 500 PHE B 41 CG PHE B 41 CD2 0.101 REMARK 500 PHE B 41 CD1 PHE B 41 CE1 0.341 REMARK 500 PHE B 41 CA PHE B 41 C -0.202 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 130 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG A 173 NE - CZ - NH2 ANGL. DEV. = -4.9 DEGREES REMARK 500 LEU A 217 CA - CB - CG ANGL. DEV. = 14.5 DEGREES REMARK 500 PHE B 41 CB - CA - C ANGL. DEV. = 19.6 DEGREES REMARK 500 PHE B 41 N - CA - CB ANGL. DEV. = -13.7 DEGREES REMARK 500 PHE B 41 CA - CB - CG ANGL. DEV. = -14.5 DEGREES REMARK 500 PHE B 41 CB - CG - CD2 ANGL. DEV. = 19.1 DEGREES REMARK 500 PHE B 41 CB - CG - CD1 ANGL. DEV. = -21.2 DEGREES REMARK 500 LEU B 136 CA - CB - CG ANGL. DEV. = -17.1 DEGREES REMARK 500 ARG B 173 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 42 -45.41 -139.45 REMARK 500 PHE A 97 136.99 -173.07 REMARK 500 THR A 124 -59.58 -123.39 REMARK 500 ASP A 150 109.83 -59.13 REMARK 500 ALA A 157 -53.41 77.29 REMARK 500 ASN A 159 -117.31 42.65 REMARK 500 LEU B 4 -51.58 136.98 REMARK 500 PHE B 41 -126.67 -77.64 REMARK 500 THR B 105 -100.82 -63.01 REMARK 500 ASN B 106 151.36 -48.98 REMARK 500 THR B 124 -53.15 -124.17 REMARK 500 ALA B 157 -46.78 72.76 REMARK 500 ASN B 159 -115.26 40.82 REMARK 500 ALA B 201 -68.37 128.51 REMARK 500 VAL B 203 116.10 175.30 REMARK 500 GLU B 209 -56.78 138.61 REMARK 500 ALA B 260 67.51 -107.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLY B 208 GLU B 209 -134.20 REMARK 500 GLU B 210 ALA B 211 -146.93 REMARK 500 ALA B 211 GLY B 212 142.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 PHE B 41 0.23 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P1H A 300 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE P1H B 400 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2H9I RELATED DB: PDB REMARK 900 MYCOBACTERIUM TUBERCULOSIS INHA BOUND WITH ETH-NAD ADDUCT REMARK 900 RELATED ID: 2NTJ RELATED DB: PDB REMARK 900 MYCOBACTERIUM TUBERCULOSIS INHA BOUND WITH PTH-NAD ADDUCT DBREF 2NTV A 2 269 UNP Q9CBM1 Q9CBM1_MYCLE 2 269 DBREF 2NTV B 2 269 UNP Q9CBM1 Q9CBM1_MYCLE 2 269 SEQRES 1 A 268 ALA GLY LEU LEU GLU GLY LYS ARG ILE LEU VAL SER GLY SEQRES 2 A 268 ILE ILE THR ASP SER SER ILE ALA PHE HIS ILE ALA LYS SEQRES 3 A 268 VAL ALA GLN GLU ALA GLY ALA GLN LEU VAL LEU THR GLY SEQRES 4 A 268 PHE ASP ARG LEU ARG LEU ILE GLN ARG ILE ALA ASP ARG SEQRES 5 A 268 LEU PRO ASP LYS ALA PRO LEU ILE GLU LEU ASP VAL GLN SEQRES 6 A 268 ASN GLU GLU HIS LEU ALA THR LEU ALA GLU ARG VAL THR SEQRES 7 A 268 ALA GLU ILE GLY GLU GLY ASN LYS LEU ASP GLY VAL VAL SEQRES 8 A 268 HIS SER ILE GLY PHE MET PRO GLN THR GLY MET GLY THR SEQRES 9 A 268 ASN GLN PHE PHE ASP ALA PRO TYR GLU ASP VAL SER LYS SEQRES 10 A 268 GLY ILE HIS ILE SER THR TYR SER TYR ALA SER LEU ALA SEQRES 11 A 268 LYS ALA LEU LEU LEU ILE MET ASN SER GLY GLY SER ILE SEQRES 12 A 268 VAL GLY MET ASP PHE ASP PRO THR ARG ALA MET PRO ALA SEQRES 13 A 268 TYR ASN TRP MET THR VAL ALA LYS SER ALA LEU GLU SER SEQRES 14 A 268 VAL ASN ARG PHE VAL ALA ARG GLU ALA GLY LYS TYR GLY SEQRES 15 A 268 VAL ARG SER ASN LEU VAL ALA ALA GLY PRO ILE ARG THR SEQRES 16 A 268 LEU ALA MET SER ALA ILE VAL GLY GLY ALA PHE GLY GLU SEQRES 17 A 268 GLU ALA GLY ALA GLN MET GLN LEU LEU GLU GLU GLY TRP SEQRES 18 A 268 ASP GLN ARG ALA PRO ILE GLY TRP ASN MET LYS ASP PRO SEQRES 19 A 268 THR PRO VAL ALA LYS THR VAL CYS ALA LEU LEU SER GLU SEQRES 20 A 268 TRP LEU PRO ALA THR THR GLY SER ILE ILE TYR ALA ASP SEQRES 21 A 268 GLY GLY ALA SER THR GLN LEU LEU SEQRES 1 B 268 ALA GLY LEU LEU GLU GLY LYS ARG ILE LEU VAL SER GLY SEQRES 2 B 268 ILE ILE THR ASP SER SER ILE ALA PHE HIS ILE ALA LYS SEQRES 3 B 268 VAL ALA GLN GLU ALA GLY ALA GLN LEU VAL LEU THR GLY SEQRES 4 B 268 PHE ASP ARG LEU ARG LEU ILE GLN ARG ILE ALA ASP ARG SEQRES 5 B 268 LEU PRO ASP LYS ALA PRO LEU ILE GLU LEU ASP VAL GLN SEQRES 6 B 268 ASN GLU GLU HIS LEU ALA THR LEU ALA GLU ARG VAL THR SEQRES 7 B 268 ALA GLU ILE GLY GLU GLY ASN LYS LEU ASP GLY VAL VAL SEQRES 8 B 268 HIS SER ILE GLY PHE MET PRO GLN THR GLY MET GLY THR SEQRES 9 B 268 ASN GLN PHE PHE ASP ALA PRO TYR GLU ASP VAL SER LYS SEQRES 10 B 268 GLY ILE HIS ILE SER THR TYR SER TYR ALA SER LEU ALA SEQRES 11 B 268 LYS ALA LEU LEU LEU ILE MET ASN SER GLY GLY SER ILE SEQRES 12 B 268 VAL GLY MET ASP PHE ASP PRO THR ARG ALA MET PRO ALA SEQRES 13 B 268 TYR ASN TRP MET THR VAL ALA LYS SER ALA LEU GLU SER SEQRES 14 B 268 VAL ASN ARG PHE VAL ALA ARG GLU ALA GLY LYS TYR GLY SEQRES 15 B 268 VAL ARG SER ASN LEU VAL ALA ALA GLY PRO ILE ARG THR SEQRES 16 B 268 LEU ALA MET SER ALA ILE VAL GLY GLY ALA PHE GLY GLU SEQRES 17 B 268 GLU ALA GLY ALA GLN MET GLN LEU LEU GLU GLU GLY TRP SEQRES 18 B 268 ASP GLN ARG ALA PRO ILE GLY TRP ASN MET LYS ASP PRO SEQRES 19 B 268 THR PRO VAL ALA LYS THR VAL CYS ALA LEU LEU SER GLU SEQRES 20 B 268 TRP LEU PRO ALA THR THR GLY SER ILE ILE TYR ALA ASP SEQRES 21 B 268 GLY GLY ALA SER THR GLN LEU LEU HET P1H A 300 55 HET P1H B 400 55 HETNAM P1H {(2R,3S,4R,5R)-5-[(4S)-3-(AMINOCARBONYL)-4-(2- HETNAM 2 P1H PROPYLISONICOTINOYL)PYRIDIN-1(4H)-YL]-3,4- HETNAM 3 P1H DIHYDROXYTETRAHYDROFURAN-2-YL}M ETHYL [(2R,3S,4R,5R)- HETNAM 4 P1H 5-(6-AMINO-9H-PURIN-9-YL)-3,4- HETNAM 5 P1H DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL DIHYDROGEN HETNAM 6 P1H DIPHOSPHATE HETSYN P1H 2-PROPYL-ISONICOTINIC-ACYL-NICOTINAMIDE-ADENINE HETSYN 2 P1H DINUCLEOTIDE FORMUL 3 P1H 2(C30 H38 N8 O15 P2) FORMUL 5 HOH *203(H2 O) HELIX 1 1 SER A 20 ALA A 32 1 13 HELIX 2 2 ARG A 43 ASP A 52 1 10 HELIX 3 3 ASN A 67 GLY A 83 1 17 HELIX 4 4 PRO A 99 MET A 103 5 5 HELIX 5 5 GLN A 107 ALA A 111 5 5 HELIX 6 6 PRO A 112 THR A 124 1 13 HELIX 7 7 THR A 124 LEU A 136 1 13 HELIX 8 8 TYR A 158 LYS A 181 1 24 HELIX 9 9 THR A 196 GLY A 204 1 9 HELIX 10 10 GLY A 208 ALA A 226 1 19 HELIX 11 11 PRO A 235 SER A 247 1 13 HELIX 12 12 GLY A 263 GLN A 267 5 5 HELIX 13 13 SER B 20 ALA B 32 1 13 HELIX 14 14 ARG B 43 ASP B 52 1 10 HELIX 15 15 ASN B 67 THR B 73 1 7 HELIX 16 16 THR B 73 GLY B 83 1 11 HELIX 17 17 PRO B 99 MET B 103 5 5 HELIX 18 18 GLN B 107 ALA B 111 5 5 HELIX 19 19 PRO B 112 THR B 124 1 13 HELIX 20 20 THR B 124 LEU B 135 1 12 HELIX 21 21 TYR B 158 GLY B 180 1 23 HELIX 22 22 LYS B 181 GLY B 183 5 3 HELIX 23 23 ALA B 198 VAL B 203 1 6 HELIX 24 24 GLY B 212 ALA B 226 1 15 HELIX 25 25 PRO B 235 SER B 247 1 13 HELIX 26 26 GLY B 263 GLN B 267 5 5 SHEET 1 A 7 LEU A 60 GLU A 62 0 SHEET 2 A 7 GLN A 35 GLY A 40 1 N LEU A 38 O ILE A 61 SHEET 3 A 7 ARG A 9 VAL A 12 1 N VAL A 12 O VAL A 37 SHEET 4 A 7 LEU A 88 HIS A 93 1 O ASP A 89 N ARG A 9 SHEET 5 A 7 MET A 138 ASP A 148 1 O VAL A 145 N HIS A 93 SHEET 6 A 7 ARG A 185 ALA A 191 1 O ARG A 185 N ILE A 144 SHEET 7 A 7 SER A 256 ALA A 260 1 O ILE A 258 N LEU A 188 SHEET 1 B 7 LEU B 60 GLU B 62 0 SHEET 2 B 7 GLN B 35 GLY B 40 1 N GLY B 40 O ILE B 61 SHEET 3 B 7 ARG B 9 SER B 13 1 N VAL B 12 O VAL B 37 SHEET 4 B 7 LEU B 88 HIS B 93 1 O ASP B 89 N ARG B 9 SHEET 5 B 7 MET B 138 ASP B 148 1 O VAL B 145 N HIS B 93 SHEET 6 B 7 ARG B 185 ALA B 191 1 O VAL B 189 N ASP B 148 SHEET 7 B 7 SER B 256 ALA B 260 1 O ILE B 258 N LEU B 188 CISPEP 1 VAL B 203 GLY B 204 0 -4.62 CISPEP 2 GLY B 205 ALA B 206 0 10.91 CISPEP 3 ALA B 206 PHE B 207 0 21.18 CISPEP 4 PHE B 207 GLY B 208 0 0.81 SITE 1 AC1 35 GLY A 14 ILE A 15 ILE A 16 SER A 20 SITE 2 AC1 35 ILE A 21 PHE A 41 LEU A 63 ASP A 64 SITE 3 AC1 35 VAL A 65 SER A 94 ILE A 95 GLY A 96 SITE 4 AC1 35 ILE A 122 MET A 147 ASP A 148 PHE A 149 SITE 5 AC1 35 MET A 155 TYR A 158 LYS A 165 ALA A 191 SITE 6 AC1 35 GLY A 192 PRO A 193 ILE A 194 THR A 196 SITE 7 AC1 35 TRP A 222 HOH A 302 HOH A 303 HOH A 320 SITE 8 AC1 35 HOH A 326 HOH A 343 HOH A 344 HOH A 345 SITE 9 AC1 35 HOH A 371 HOH A 382 HOH A 389 SITE 1 AC2 31 GLY B 14 ILE B 15 ILE B 16 SER B 20 SITE 2 AC2 31 ILE B 21 PHE B 41 LEU B 63 ASP B 64 SITE 3 AC2 31 SER B 94 ILE B 95 GLY B 96 ILE B 122 SITE 4 AC2 31 MET B 147 ASP B 148 PHE B 149 LYS B 165 SITE 5 AC2 31 ALA B 191 GLY B 192 PRO B 193 ILE B 194 SITE 6 AC2 31 THR B 196 ALA B 198 MET B 199 LEU B 218 SITE 7 AC2 31 TRP B 222 HOH B 402 HOH B 413 HOH B 420 SITE 8 AC2 31 HOH B 425 HOH B 430 HOH B 452 CRYST1 91.232 100.019 186.622 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010961 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009998 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005358 0.00000