HEADER HYDROLASE 09-NOV-06 2NUJ TITLE CRYSTAL STRUCTURE OF THIOESTERASE SUPERFAMILY (YP_509914.1) FROM TITLE 2 JANNASCHIA SP. CCS1 AT 2.00 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: THIOESTERASE SUPERFAMILY; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: JANNASCHIA; SOURCE 3 ORGANISM_TAXID: 188905; SOURCE 4 STRAIN: CCS1; SOURCE 5 GENE: YP_509914.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS YP_509914.1, THIOESTERASE SUPERFAMILY, STRUCTURAL GENOMICS, PSI-2, KEYWDS 2 PROTEIN STRUCTURE INITIATIVE, JOINT CENTER FOR STRUCTURAL GENOMICS, KEYWDS 3 JCSG, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 5 25-JAN-23 2NUJ 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2NUJ 1 REMARK REVDAT 3 13-JUL-11 2NUJ 1 VERSN REVDAT 2 24-FEB-09 2NUJ 1 VERSN REVDAT 1 12-DEC-06 2NUJ 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF THIOESTERASE SUPERFAMILY (YP_509914.1) JRNL TITL 2 FROM JANNASCHIA SP. CCS1 AT 2.00 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0005 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.80 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 32500 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.157 REMARK 3 R VALUE (WORKING SET) : 0.155 REMARK 3 FREE R VALUE : 0.187 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1648 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2254 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE SET COUNT : 116 REMARK 3 BIN FREE R VALUE : 0.2730 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2485 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 221 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 23.96 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.85 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.43000 REMARK 3 B22 (A**2) : 0.43000 REMARK 3 B33 (A**2) : -0.87000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.120 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.115 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.811 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.965 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.955 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2681 ; 0.016 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2476 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3670 ; 1.597 ; 1.966 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5683 ; 0.834 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 333 ; 6.330 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;35.195 ;21.017 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 393 ;11.982 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;16.108 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 400 ; 0.094 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3015 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 617 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 474 ; 0.207 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 2492 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1313 ; 0.185 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 1663 ; 0.086 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 165 ; 0.167 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 8 ; 0.172 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 73 ; 0.282 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 16 ; 0.168 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1659 ; 2.089 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 662 ; 0.771 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2651 ; 3.095 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1150 ; 4.899 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1019 ; 6.947 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 161 5 REMARK 3 1 B 3 B 161 5 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 MEDIUM POSITIONAL 1 A (A): 893 ; 0.340 ; 0.500 REMARK 3 LOOSE POSITIONAL 1 A (A): 1406 ; 0.550 ; 5.000 REMARK 3 MEDIUM THERMAL 1 A (A**2): 893 ; 1.120 ; 2.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1406 ; 2.870 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 3 A 161 REMARK 3 ORIGIN FOR THE GROUP (A): 50.9950 50.0773 6.0758 REMARK 3 T TENSOR REMARK 3 T11: -0.0584 T22: -0.0447 REMARK 3 T33: -0.0621 T12: 0.0223 REMARK 3 T13: -0.0107 T23: -0.0032 REMARK 3 L TENSOR REMARK 3 L11: 0.6187 L22: 1.0297 REMARK 3 L33: 1.1158 L12: 0.1004 REMARK 3 L13: -0.0240 L23: 0.3683 REMARK 3 S TENSOR REMARK 3 S11: 0.0213 S12: -0.0512 S13: -0.0250 REMARK 3 S21: 0.0184 S22: 0.0633 S23: -0.0841 REMARK 3 S31: 0.0832 S32: 0.1310 S33: -0.0846 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 3 B 161 REMARK 3 ORIGIN FOR THE GROUP (A): 43.8692 78.4208 12.3838 REMARK 3 T TENSOR REMARK 3 T11: -0.0045 T22: -0.0768 REMARK 3 T33: -0.0252 T12: -0.0156 REMARK 3 T13: -0.0082 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 1.0672 L22: 1.6479 REMARK 3 L33: 1.4608 L12: -0.6220 REMARK 3 L13: -0.2291 L23: 0.6098 REMARK 3 S TENSOR REMARK 3 S11: -0.0569 S12: -0.0719 S13: 0.0910 REMARK 3 S21: 0.1667 S22: 0.0654 S23: -0.0715 REMARK 3 S31: -0.0723 S32: 0.0486 S33: -0.0085 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. ATOM RECORD CONTAINS RESIDUAL B FACTORS ONLY. REMARK 3 3. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION REMARK 3 DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE REMARK 3 MSE REMARK 3 RESIDUES WAS REDUCED TO 0.75 TO ACCOUNT FOR THE REDUCED SCATTERING REMARK 3 POWER DUE TO PARTIAL S-MET INCORPORATION. REMARK 3 4. FIVE MPD MOLCULES FROM CRYSTALLIZATION SOLUTION ARE INCLUDED REMARK 3 IN THE MODEL. REMARK 3 5. THERE IS SOME UNKNOWN DENSITY NEAR HIS64B, BUT THE EQUIVALENT REMARK 3 DENSITY WAS REMARK 3 NOT FOUND IN HIS64A. REMARK 4 REMARK 4 2NUJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040318. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97922 REMARK 200 MONOCHROMATOR : SI(111) DOUBLE CRYSTAL REMARK 200 MONOCHROMETER REMARK 200 OPTICS : ADJUSTABLE FOCUSING MIRRORS IN K REMARK 200 -B GEOMETRY REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32500 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 28.796 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.19300 REMARK 200 R SYM (I) : 0.19300 REMARK 200 FOR THE DATA SET : 10.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.20 REMARK 200 R MERGE FOR SHELL (I) : 1.38500 REMARK 200 R SYM FOR SHELL (I) : 1.38500 REMARK 200 FOR SHELL : 1.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.45 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 65.0% MPD, 0.1M BICINE, PH 9.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+1/4 REMARK 290 4555 Y,-X,Z+3/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+3/4 REMARK 290 8555 -Y,-X,-Z+1/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 75.70900 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 37.85450 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 113.56350 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 75.70900 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 113.56350 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 37.85450 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC REMARK 300 ASYMMETRIC UNIT WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). SIZE REMARK 300 EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS REMARK 300 THE ASSIGNMENT OF A TETRAMER AS A BIOLOGICALLY SIGNIFICANT REMARK 300 OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 10780 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -134.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 78.40100 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 THR A 2 REMARK 465 GLY A 162 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 THR B 2 REMARK 465 GLY B 162 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 159 CG CD1 CD2 REMARK 470 ASP B 119 CB CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP B 38 CB - CG - OD1 ANGL. DEV. = 5.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 104 -123.05 -124.90 REMARK 500 ARG A 104 -124.37 -124.90 REMARK 500 ALA A 160 -145.58 -157.82 REMARK 500 ARG B 104 -165.01 -121.29 REMARK 500 SER B 125 146.21 -170.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD A 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MPD B 165 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 366909 RELATED DB: TARGETDB DBREF 2NUJ A 1 162 UNP Q28QX3 Q28QX3_JANSC 1 162 DBREF 2NUJ B 1 162 UNP Q28QX3 Q28QX3_JANSC 1 162 SEQADV 2NUJ GLY A 0 UNP Q28QX3 EXPRESSION TAG SEQADV 2NUJ MSE A 1 UNP Q28QX3 MET 1 MODIFIED RESIDUE SEQADV 2NUJ MSE A 88 UNP Q28QX3 MET 88 MODIFIED RESIDUE SEQADV 2NUJ MSE A 90 UNP Q28QX3 MET 90 MODIFIED RESIDUE SEQADV 2NUJ MSE A 110 UNP Q28QX3 MET 110 MODIFIED RESIDUE SEQADV 2NUJ GLY B 0 UNP Q28QX3 EXPRESSION TAG SEQADV 2NUJ MSE B 1 UNP Q28QX3 MET 1 MODIFIED RESIDUE SEQADV 2NUJ MSE B 88 UNP Q28QX3 MET 88 MODIFIED RESIDUE SEQADV 2NUJ MSE B 90 UNP Q28QX3 MET 90 MODIFIED RESIDUE SEQADV 2NUJ MSE B 110 UNP Q28QX3 MET 110 MODIFIED RESIDUE SEQRES 1 A 163 GLY MSE THR LEU PRO PRO TYR HIS THR PRO LEU PRO ALA SEQRES 2 A 163 GLU THR LEU ARG ALA LEU SER ILE PRO ALA PRO TRP THR SEQRES 3 A 163 PHE GLY LEU ALA ASP ARG VAL ARG PHE GLY GLU LEU ASP SEQRES 4 A 163 ALA ILE GLY HIS VAL ASN HIS THR ALA TYR LEU ARG TRP SEQRES 5 A 163 TYR GLU SER PHE ARG LEU PRO PHE LEU LYS ALA ARG HIS SEQRES 6 A 163 VAL THR ASP TYR GLY PRO THR SER PRO ARG LEU VAL LEU SEQRES 7 A 163 LYS GLN VAL HIS CYS THR TYR LEU ALA GLU MSE GLY MSE SEQRES 8 A 163 GLY GLU ASP TYR VAL ILE THR GLY ARG VAL SER ASN PHE SEQRES 9 A 163 ARG THR THR SER PHE THR MSE GLU PHE ALA CYS TRP ARG SEQRES 10 A 163 LEU GLY ASP ALA VAL GLU CYS THR SER GLU GLY SER ALA SEQRES 11 A 163 VAL VAL VAL LEU LEU ASN ARG ASP GLY SER GLY ARG TYR SEQRES 12 A 163 PRO ILE PRO GLU ALA GLY ARG ALA SER PHE VAL THR GLU SEQRES 13 A 163 ASP GLY VAL LEU ALA ALA GLY SEQRES 1 B 163 GLY MSE THR LEU PRO PRO TYR HIS THR PRO LEU PRO ALA SEQRES 2 B 163 GLU THR LEU ARG ALA LEU SER ILE PRO ALA PRO TRP THR SEQRES 3 B 163 PHE GLY LEU ALA ASP ARG VAL ARG PHE GLY GLU LEU ASP SEQRES 4 B 163 ALA ILE GLY HIS VAL ASN HIS THR ALA TYR LEU ARG TRP SEQRES 5 B 163 TYR GLU SER PHE ARG LEU PRO PHE LEU LYS ALA ARG HIS SEQRES 6 B 163 VAL THR ASP TYR GLY PRO THR SER PRO ARG LEU VAL LEU SEQRES 7 B 163 LYS GLN VAL HIS CYS THR TYR LEU ALA GLU MSE GLY MSE SEQRES 8 B 163 GLY GLU ASP TYR VAL ILE THR GLY ARG VAL SER ASN PHE SEQRES 9 B 163 ARG THR THR SER PHE THR MSE GLU PHE ALA CYS TRP ARG SEQRES 10 B 163 LEU GLY ASP ALA VAL GLU CYS THR SER GLU GLY SER ALA SEQRES 11 B 163 VAL VAL VAL LEU LEU ASN ARG ASP GLY SER GLY ARG TYR SEQRES 12 B 163 PRO ILE PRO GLU ALA GLY ARG ALA SER PHE VAL THR GLU SEQRES 13 B 163 ASP GLY VAL LEU ALA ALA GLY MODRES 2NUJ MSE A 88 MET SELENOMETHIONINE MODRES 2NUJ MSE A 90 MET SELENOMETHIONINE MODRES 2NUJ MSE A 110 MET SELENOMETHIONINE MODRES 2NUJ MSE B 88 MET SELENOMETHIONINE MODRES 2NUJ MSE B 90 MET SELENOMETHIONINE MODRES 2NUJ MSE B 110 MET SELENOMETHIONINE HET MSE A 88 8 HET MSE A 90 8 HET MSE A 110 8 HET MSE B 88 8 HET MSE B 90 8 HET MSE B 110 8 HET MPD A 163 8 HET MPD A 164 8 HET MPD B 163 8 HET MPD B 164 8 HET MPD B 165 8 HETNAM MSE SELENOMETHIONINE HETNAM MPD (4S)-2-METHYL-2,4-PENTANEDIOL FORMUL 1 MSE 6(C5 H11 N O2 SE) FORMUL 3 MPD 5(C6 H14 O2) FORMUL 8 HOH *221(H2 O) HELIX 1 1 ALA A 12 LEU A 18 1 7 HELIX 2 2 ARG A 33 LEU A 37 5 5 HELIX 3 3 ASN A 44 ARG A 63 1 20 HELIX 4 4 PRO A 145 GLU A 155 1 11 HELIX 5 5 ALA B 12 LEU B 18 1 7 HELIX 6 6 ARG B 33 LEU B 37 5 5 HELIX 7 7 ASN B 44 ARG B 63 1 20 HELIX 8 8 PRO B 145 ASP B 156 1 12 SHEET 1 A 6 LEU A 10 PRO A 11 0 SHEET 2 A 6 PHE A 26 ARG A 31 -1 O GLY A 27 N LEU A 10 SHEET 3 A 6 ASP A 93 PHE A 103 -1 O ILE A 96 N LEU A 28 SHEET 4 A 6 SER A 107 ARG A 116 -1 O THR A 109 N SER A 101 SHEET 5 A 6 GLU A 122 LEU A 134 -1 O ALA A 129 N MSE A 110 SHEET 6 A 6 ARG A 74 TYR A 84 -1 N THR A 83 O GLU A 126 SHEET 1 B 6 LEU B 10 PRO B 11 0 SHEET 2 B 6 PHE B 26 ARG B 31 -1 O GLY B 27 N LEU B 10 SHEET 3 B 6 ASP B 93 PHE B 103 -1 O ILE B 96 N LEU B 28 SHEET 4 B 6 SER B 107 LEU B 117 -1 O THR B 109 N ASN B 102 SHEET 5 B 6 VAL B 121 LEU B 134 -1 O GLU B 122 N ARG B 116 SHEET 6 B 6 ARG B 74 TYR B 84 -1 N LYS B 78 O VAL B 130 LINK C GLU A 87 N MSE A 88 1555 1555 1.33 LINK C MSE A 88 N GLY A 89 1555 1555 1.33 LINK C GLY A 89 N MSE A 90 1555 1555 1.33 LINK C MSE A 90 N GLY A 91 1555 1555 1.32 LINK C ATHR A 109 N MSE A 110 1555 1555 1.33 LINK C BTHR A 109 N MSE A 110 1555 1555 1.33 LINK C MSE A 110 N GLU A 111 1555 1555 1.33 LINK C GLU B 87 N MSE B 88 1555 1555 1.33 LINK C MSE B 88 N GLY B 89 1555 1555 1.33 LINK C GLY B 89 N MSE B 90 1555 1555 1.32 LINK C MSE B 90 N GLY B 91 1555 1555 1.33 LINK C THR B 109 N MSE B 110 1555 1555 1.34 LINK C MSE B 110 N GLU B 111 1555 1555 1.31 CISPEP 1 ALA A 22 PRO A 23 0 5.84 CISPEP 2 ALA B 22 PRO B 23 0 7.77 SITE 1 AC1 4 ARG A 56 HOH A 224 HOH A 233 PHE B 34 SITE 1 AC2 3 PHE A 34 ARG B 56 HOH B 204 SITE 1 AC3 9 ARG A 33 GLY A 35 GLU A 36 ARG A 50 SITE 2 AC3 9 HOH A 178 ARG B 33 ARG B 50 HOH B 170 SITE 3 AC3 9 HOH B 219 SITE 1 AC4 7 THR A 25 PHE A 26 ARG A 63 GLU A 155 SITE 2 AC4 7 HOH A 183 HOH A 286 ARG B 149 SITE 1 AC5 2 MSE A 90 LYS B 61 CRYST1 78.401 78.401 151.418 90.00 90.00 90.00 P 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012760 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012760 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006600 0.00000