HEADER HYDROLASE 10-NOV-06 2NV5 TITLE CRYSTAL STRUCTURE OF A C-TERMINAL PHOSPHATASE DOMAIN OF RATTUS TITLE 2 NORVEGICUS ORTHOLOG OF HUMAN PROTEIN TYROSINE PHOSPHATASE, RECEPTOR TITLE 3 TYPE, D (PTPRD) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN-TYROSINE-PHOSPHATASE; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: PTPRD; COMPND 5 EC: 3.1.3.48; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: PTPRD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: MODIFIED PET26 KEYWDS PHOSPHATASE, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NEW YORK SGX RESEARCH CENTER FOR STRUCTURAL GENOMICS, NYSGXRC, KEYWDS 3 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.B.BONANNO,J.GILMORE,K.T.BAIN,M.IIZUKA,W.XU,S.WASSERMAN,D.SMITH, AUTHOR 2 J.M.SAUDER,S.K.BURLEY,S.C.ALMO,NEW YORK SGX RESEARCH CENTER FOR AUTHOR 3 STRUCTURAL GENOMICS (NYSGXRC) REVDAT 8 02-OCT-24 2NV5 1 COMPND SOURCE DBREF SEQADV REVDAT 7 27-DEC-23 2NV5 1 REMARK REVDAT 6 03-FEB-21 2NV5 1 AUTHOR JRNL SEQADV REVDAT 5 14-NOV-18 2NV5 1 AUTHOR REVDAT 4 18-OCT-17 2NV5 1 REMARK REVDAT 3 24-OCT-12 2NV5 1 AUTHOR VERSN REVDAT 2 25-MAR-08 2NV5 1 VERSN REVDAT 1 21-NOV-06 2NV5 0 JRNL AUTH S.C.ALMO,J.B.BONANNO,J.M.SAUDER,S.EMTAGE,T.P.DILORENZO, JRNL AUTH 2 V.MALASHKEVICH,S.R.WASSERMAN,S.SWAMINATHAN,S.ESWARAMOORTHY, JRNL AUTH 3 R.AGARWAL,D.KUMARAN,M.MADEGOWDA,S.RAGUMANI,Y.PATSKOVSKY, JRNL AUTH 4 J.ALVARADO,U.A.RAMAGOPAL,J.FABER-BARATA,M.R.CHANCE,A.SALI, JRNL AUTH 5 A.FISER,Z.Y.ZHANG,D.S.LAWRENCE,S.K.BURLEY JRNL TITL STRUCTURAL GENOMICS OF PROTEIN PHOSPHATASES. JRNL REF J.STRUCT.FUNCT.GENOM. V. 8 121 2007 JRNL REFN ISSN 1345-711X JRNL PMID 18058037 JRNL DOI 10.1007/S10969-007-9036-1 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 83277 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.237 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 4119 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5648 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2360 REMARK 3 BIN FREE R VALUE SET COUNT : 310 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6861 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 628 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.158 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.149 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.108 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.853 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.950 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 7056 ; 0.014 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 9595 ; 1.407 ; 1.937 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 854 ; 5.873 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 355 ;32.205 ;23.577 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1171 ;15.443 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 54 ;18.462 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 1039 ; 0.105 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5465 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3028 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4812 ; 0.307 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 524 ; 0.142 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 57 ; 0.194 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 25 ; 0.192 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 4383 ; 1.031 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6921 ; 1.624 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 3069 ; 2.480 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2670 ; 3.791 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NV5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040339. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 77 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97958 REMARK 200 MONOCHROMATOR : DIAMOND REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 83626 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 19.890 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 16.50 REMARK 200 R MERGE (I) : 0.12600 REMARK 200 R SYM (I) : 0.12600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 18.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.11 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 12.60 REMARK 200 R MERGE FOR SHELL (I) : 0.83700 REMARK 200 R SYM FOR SHELL (I) : 0.83700 REMARK 200 <I/SIGMA(I)> FOR SHELL : 3.400 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.58 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG MME 2K, 100MM POTASSIUM REMARK 280 THIOCYANATE, PH 7.0, VAPOR DIFFUSION, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 37.47700 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 74.95400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 56.21550 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 93.69250 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 18.73850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1200 REMARK 465 SER A 1201 REMARK 465 LEU A 1202 REMARK 465 ALA A 1203 REMARK 465 GLY A 1487 REMARK 465 ASN A 1488 REMARK 465 THR A 1489 REMARK 465 GLU A 1490 REMARK 465 GLU A 1491 REMARK 465 GLY A 1492 REMARK 465 HIS A 1493 REMARK 465 HIS A 1494 REMARK 465 HIS A 1495 REMARK 465 HIS A 1496 REMARK 465 HIS A 1497 REMARK 465 HIS A 1498 REMARK 465 MET B 1200 REMARK 465 SER B 1201 REMARK 465 LEU B 1202 REMARK 465 ALA B 1203 REMARK 465 GLY B 1487 REMARK 465 ASN B 1488 REMARK 465 THR B 1489 REMARK 465 GLU B 1490 REMARK 465 GLU B 1491 REMARK 465 GLY B 1492 REMARK 465 HIS B 1493 REMARK 465 HIS B 1494 REMARK 465 HIS B 1495 REMARK 465 HIS B 1496 REMARK 465 HIS B 1497 REMARK 465 HIS B 1498 REMARK 465 MET C 1200 REMARK 465 SER C 1201 REMARK 465 LEU C 1202 REMARK 465 ALA C 1203 REMARK 465 GLY C 1487 REMARK 465 ASN C 1488 REMARK 465 THR C 1489 REMARK 465 GLU C 1490 REMARK 465 GLU C 1491 REMARK 465 GLY C 1492 REMARK 465 HIS C 1493 REMARK 465 HIS C 1494 REMARK 465 HIS C 1495 REMARK 465 HIS C 1496 REMARK 465 HIS C 1497 REMARK 465 HIS C 1498 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 1416 O HOH A 827 1.99 REMARK 500 NE ARG B 1318 O HOH B 555 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A1243 45.20 -151.69 REMARK 500 CYS A1424 -125.03 -127.78 REMARK 500 VAL A1428 -31.20 -132.65 REMARK 500 VAL A1467 84.56 65.25 REMARK 500 ASP B1236 110.54 -160.30 REMARK 500 TRP B1243 49.14 -146.93 REMARK 500 ARG B1331 49.42 30.58 REMARK 500 SER B1332 86.35 46.31 REMARK 500 ARG B1333 136.23 172.47 REMARK 500 CYS B1424 -128.97 -131.43 REMARK 500 VAL B1467 85.27 66.33 REMARK 500 TRP C1243 46.90 -149.91 REMARK 500 SER C1332 10.09 53.02 REMARK 500 CYS C1424 -121.66 -132.52 REMARK 500 SER C1425 -62.65 -91.20 REMARK 500 VAL C1428 -35.35 -133.65 REMARK 500 VAL C1467 86.87 66.10 REMARK 500 THR C1485 60.08 -66.64 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: NYSGXRC-8613C RELATED DB: TARGETDB DBREF 2NV5 A 1203 1490 UNP M0RB22 M0RB22_RAT 1319 1606 DBREF 2NV5 B 1203 1490 UNP M0RB22 M0RB22_RAT 1319 1606 DBREF 2NV5 C 1203 1490 UNP M0RB22 M0RB22_RAT 1319 1606 SEQADV 2NV5 MET A 1200 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 SER A 1201 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 LEU A 1202 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 GLU A 1491 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 GLY A 1492 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS A 1493 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS A 1494 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS A 1495 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS A 1496 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS A 1497 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS A 1498 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 MET B 1200 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 SER B 1201 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 LEU B 1202 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 GLU B 1491 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 GLY B 1492 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS B 1493 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS B 1494 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS B 1495 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS B 1496 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS B 1497 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS B 1498 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 MET C 1200 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 SER C 1201 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 LEU C 1202 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 GLU C 1491 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 GLY C 1492 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS C 1493 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS C 1494 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS C 1495 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS C 1496 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS C 1497 UNP M0RB22 EXPRESSION TAG SEQADV 2NV5 HIS C 1498 UNP M0RB22 EXPRESSION TAG SEQRES 1 A 299 MET SER LEU ALA SER HIS PRO PRO ILE PRO ILE LEU GLU SEQRES 2 A 299 LEU ALA ASP HIS ILE GLU ARG LEU LYS ALA ASN ASP ASN SEQRES 3 A 299 LEU LYS PHE SER GLN GLU TYR GLU SER ILE ASP PRO GLY SEQRES 4 A 299 GLN GLN PHE THR TRP GLU HIS SER ASN LEU GLU VAL ASN SEQRES 5 A 299 LYS PRO LYS ASN ARG TYR ALA ASN VAL ILE ALA TYR ASP SEQRES 6 A 299 HIS SER ARG VAL LEU LEU SER ALA ILE GLU GLY ILE PRO SEQRES 7 A 299 GLY SER ASP TYR VAL ASN ALA ASN TYR ILE ASP GLY TYR SEQRES 8 A 299 ARG LYS GLN ASN ALA TYR ILE ALA THR GLN GLY SER LEU SEQRES 9 A 299 PRO GLU THR PHE GLY ASP PHE TRP ARG MET ILE TRP GLU SEQRES 10 A 299 GLN ARG SER ALA THR VAL VAL MET MET THR LYS LEU GLU SEQRES 11 A 299 GLU ARG SER ARG VAL LYS CYS ASP GLN TYR TRP PRO SER SEQRES 12 A 299 ARG GLY THR GLU THR HIS GLY LEU VAL GLN VAL THR LEU SEQRES 13 A 299 LEU ASP THR VAL GLU LEU ALA THR TYR CYS VAL ARG THR SEQRES 14 A 299 PHE ALA LEU TYR LYS ASN GLY SER SER GLU LYS ARG GLU SEQRES 15 A 299 VAL ARG GLN PHE GLN PHE THR ALA TRP PRO ASP HIS GLY SEQRES 16 A 299 VAL PRO GLU HIS PRO THR PRO PHE LEU ALA PHE LEU ARG SEQRES 17 A 299 ARG VAL LYS THR CYS ASN PRO PRO ASP ALA GLY PRO MET SEQRES 18 A 299 VAL VAL HIS CYS SER ALA GLY VAL GLY ARG THR GLY CYS SEQRES 19 A 299 PHE ILE VAL ILE ASP ALA MET LEU GLU ARG ILE LYS HIS SEQRES 20 A 299 GLU LYS THR VAL ASP ILE TYR GLY HIS VAL THR LEU MET SEQRES 21 A 299 ARG ALA GLN ARG ASN TYR MET VAL GLN THR GLU ASP GLN SEQRES 22 A 299 TYR ILE PHE ILE HIS ASP ALA LEU LEU GLU ALA VAL THR SEQRES 23 A 299 CYS GLY ASN THR GLU GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 B 299 MET SER LEU ALA SER HIS PRO PRO ILE PRO ILE LEU GLU SEQRES 2 B 299 LEU ALA ASP HIS ILE GLU ARG LEU LYS ALA ASN ASP ASN SEQRES 3 B 299 LEU LYS PHE SER GLN GLU TYR GLU SER ILE ASP PRO GLY SEQRES 4 B 299 GLN GLN PHE THR TRP GLU HIS SER ASN LEU GLU VAL ASN SEQRES 5 B 299 LYS PRO LYS ASN ARG TYR ALA ASN VAL ILE ALA TYR ASP SEQRES 6 B 299 HIS SER ARG VAL LEU LEU SER ALA ILE GLU GLY ILE PRO SEQRES 7 B 299 GLY SER ASP TYR VAL ASN ALA ASN TYR ILE ASP GLY TYR SEQRES 8 B 299 ARG LYS GLN ASN ALA TYR ILE ALA THR GLN GLY SER LEU SEQRES 9 B 299 PRO GLU THR PHE GLY ASP PHE TRP ARG MET ILE TRP GLU SEQRES 10 B 299 GLN ARG SER ALA THR VAL VAL MET MET THR LYS LEU GLU SEQRES 11 B 299 GLU ARG SER ARG VAL LYS CYS ASP GLN TYR TRP PRO SER SEQRES 12 B 299 ARG GLY THR GLU THR HIS GLY LEU VAL GLN VAL THR LEU SEQRES 13 B 299 LEU ASP THR VAL GLU LEU ALA THR TYR CYS VAL ARG THR SEQRES 14 B 299 PHE ALA LEU TYR LYS ASN GLY SER SER GLU LYS ARG GLU SEQRES 15 B 299 VAL ARG GLN PHE GLN PHE THR ALA TRP PRO ASP HIS GLY SEQRES 16 B 299 VAL PRO GLU HIS PRO THR PRO PHE LEU ALA PHE LEU ARG SEQRES 17 B 299 ARG VAL LYS THR CYS ASN PRO PRO ASP ALA GLY PRO MET SEQRES 18 B 299 VAL VAL HIS CYS SER ALA GLY VAL GLY ARG THR GLY CYS SEQRES 19 B 299 PHE ILE VAL ILE ASP ALA MET LEU GLU ARG ILE LYS HIS SEQRES 20 B 299 GLU LYS THR VAL ASP ILE TYR GLY HIS VAL THR LEU MET SEQRES 21 B 299 ARG ALA GLN ARG ASN TYR MET VAL GLN THR GLU ASP GLN SEQRES 22 B 299 TYR ILE PHE ILE HIS ASP ALA LEU LEU GLU ALA VAL THR SEQRES 23 B 299 CYS GLY ASN THR GLU GLU GLY HIS HIS HIS HIS HIS HIS SEQRES 1 C 299 MET SER LEU ALA SER HIS PRO PRO ILE PRO ILE LEU GLU SEQRES 2 C 299 LEU ALA ASP HIS ILE GLU ARG LEU LYS ALA ASN ASP ASN SEQRES 3 C 299 LEU LYS PHE SER GLN GLU TYR GLU SER ILE ASP PRO GLY SEQRES 4 C 299 GLN GLN PHE THR TRP GLU HIS SER ASN LEU GLU VAL ASN SEQRES 5 C 299 LYS PRO LYS ASN ARG TYR ALA ASN VAL ILE ALA TYR ASP SEQRES 6 C 299 HIS SER ARG VAL LEU LEU SER ALA ILE GLU GLY ILE PRO SEQRES 7 C 299 GLY SER ASP TYR VAL ASN ALA ASN TYR ILE ASP GLY TYR SEQRES 8 C 299 ARG LYS GLN ASN ALA TYR ILE ALA THR GLN GLY SER LEU SEQRES 9 C 299 PRO GLU THR PHE GLY ASP PHE TRP ARG MET ILE TRP GLU SEQRES 10 C 299 GLN ARG SER ALA THR VAL VAL MET MET THR LYS LEU GLU SEQRES 11 C 299 GLU ARG SER ARG VAL LYS CYS ASP GLN TYR TRP PRO SER SEQRES 12 C 299 ARG GLY THR GLU THR HIS GLY LEU VAL GLN VAL THR LEU SEQRES 13 C 299 LEU ASP THR VAL GLU LEU ALA THR TYR CYS VAL ARG THR SEQRES 14 C 299 PHE ALA LEU TYR LYS ASN GLY SER SER GLU LYS ARG GLU SEQRES 15 C 299 VAL ARG GLN PHE GLN PHE THR ALA TRP PRO ASP HIS GLY SEQRES 16 C 299 VAL PRO GLU HIS PRO THR PRO PHE LEU ALA PHE LEU ARG SEQRES 17 C 299 ARG VAL LYS THR CYS ASN PRO PRO ASP ALA GLY PRO MET SEQRES 18 C 299 VAL VAL HIS CYS SER ALA GLY VAL GLY ARG THR GLY CYS SEQRES 19 C 299 PHE ILE VAL ILE ASP ALA MET LEU GLU ARG ILE LYS HIS SEQRES 20 C 299 GLU LYS THR VAL ASP ILE TYR GLY HIS VAL THR LEU MET SEQRES 21 C 299 ARG ALA GLN ARG ASN TYR MET VAL GLN THR GLU ASP GLN SEQRES 22 C 299 TYR ILE PHE ILE HIS ASP ALA LEU LEU GLU ALA VAL THR SEQRES 23 C 299 CYS GLY ASN THR GLU GLU GLY HIS HIS HIS HIS HIS HIS FORMUL 4 HOH *628(H2 O) HELIX 1 1 GLU A 1212 ILE A 1235 1 24 HELIX 2 2 GLU A 1244 LEU A 1248 5 5 HELIX 3 3 ASN A 1251 ASN A 1255 5 5 HELIX 4 4 TYR A 1263 HIS A 1265 5 3 HELIX 5 5 LEU A 1303 GLU A 1305 5 3 HELIX 6 6 THR A 1306 GLN A 1317 1 12 HELIX 7 7 PRO A 1399 ASN A 1413 1 15 HELIX 8 8 GLY A 1429 LYS A 1448 1 20 HELIX 9 9 ASP A 1451 ALA A 1461 1 11 HELIX 10 10 THR A 1469 THR A 1485 1 17 HELIX 11 11 GLU B 1212 SER B 1234 1 23 HELIX 12 12 TRP B 1243 LEU B 1248 1 6 HELIX 13 13 ASN B 1251 ASN B 1255 5 5 HELIX 14 14 LEU B 1303 GLU B 1305 5 3 HELIX 15 15 THR B 1306 ARG B 1318 1 13 HELIX 16 16 PRO B 1399 ASN B 1413 1 15 HELIX 17 17 GLY B 1429 LYS B 1448 1 20 HELIX 18 18 ASP B 1451 ARG B 1463 1 13 HELIX 19 19 THR B 1469 THR B 1485 1 17 HELIX 20 20 GLU C 1212 ILE C 1235 1 24 HELIX 21 21 TRP C 1243 LEU C 1248 1 6 HELIX 22 22 ASN C 1251 ASN C 1255 5 5 HELIX 23 23 TYR C 1263 HIS C 1265 5 3 HELIX 24 24 LEU C 1303 GLU C 1305 5 3 HELIX 25 25 THR C 1306 ARG C 1318 1 13 HELIX 26 26 PRO C 1399 ASN C 1413 1 15 HELIX 27 27 GLY C 1429 LYS C 1448 1 20 HELIX 28 28 ASP C 1451 ALA C 1461 1 11 HELIX 29 29 THR C 1469 THR C 1485 1 17 SHEET 1 A 2 ILE A1208 PRO A1209 0 SHEET 2 A 2 THR A1449 VAL A1450 -1 O VAL A1450 N ILE A1208 SHEET 1 B 9 ARG A1267 LEU A1269 0 SHEET 2 B 9 TYR A1281 GLY A1289 -1 O ALA A1284 N VAL A1268 SHEET 3 B 9 LYS A1292 THR A1299 -1 O ALA A1298 N ASN A1285 SHEET 4 B 9 MET A1420 HIS A1423 1 O VAL A1422 N ILE A1297 SHEET 5 B 9 THR A1321 MET A1324 1 N VAL A1323 O VAL A1421 SHEET 6 B 9 ARG A1380 PHE A1387 1 O PHE A1385 N VAL A1322 SHEET 7 B 9 TYR A1364 LYS A1373 -1 N PHE A1369 O VAL A1382 SHEET 8 B 9 VAL A1351 GLU A1360 -1 N LEU A1356 O THR A1368 SHEET 9 B 9 THR A1345 HIS A1348 -1 N HIS A1348 O VAL A1351 SHEET 1 C 2 GLU A1329 GLU A1330 0 SHEET 2 C 2 ARG A1333 VAL A1334 -1 O ARG A1333 N GLU A1330 SHEET 1 D 2 ILE B1208 PRO B1209 0 SHEET 2 D 2 THR B1449 VAL B1450 -1 O VAL B1450 N ILE B1208 SHEET 1 E 9 ARG B1267 LEU B1269 0 SHEET 2 E 9 TYR B1281 GLY B1289 -1 O ALA B1284 N VAL B1268 SHEET 3 E 9 LYS B1292 THR B1299 -1 O ALA B1298 N ASN B1285 SHEET 4 E 9 MET B1420 HIS B1423 1 O VAL B1422 N ILE B1297 SHEET 5 E 9 THR B1321 MET B1324 1 N VAL B1323 O HIS B1423 SHEET 6 E 9 LYS B1379 PHE B1387 1 O PHE B1385 N VAL B1322 SHEET 7 E 9 TYR B1364 LYS B1373 -1 N LEU B1371 O ARG B1380 SHEET 8 E 9 VAL B1351 GLU B1360 -1 N GLN B1352 O TYR B1372 SHEET 9 E 9 THR B1345 HIS B1348 -1 N HIS B1348 O VAL B1351 SHEET 1 F 2 ILE C1208 PRO C1209 0 SHEET 2 F 2 THR C1449 VAL C1450 -1 O VAL C1450 N ILE C1208 SHEET 1 G 9 ARG C1267 LEU C1269 0 SHEET 2 G 9 TYR C1281 GLY C1289 -1 O ALA C1284 N VAL C1268 SHEET 3 G 9 LYS C1292 THR C1299 -1 O ALA C1298 N ASN C1285 SHEET 4 G 9 MET C1420 HIS C1423 1 O VAL C1422 N ILE C1297 SHEET 5 G 9 THR C1321 MET C1324 1 N VAL C1323 O HIS C1423 SHEET 6 G 9 ARG C1380 PHE C1387 1 O PHE C1385 N VAL C1322 SHEET 7 G 9 TYR C1364 LYS C1373 -1 N LEU C1371 O ARG C1380 SHEET 8 G 9 VAL C1351 GLU C1360 -1 N GLN C1352 O TYR C1372 SHEET 9 G 9 THR C1345 HIS C1348 -1 N GLU C1346 O VAL C1353 SHEET 1 H 2 GLU C1329 GLU C1330 0 SHEET 2 H 2 ARG C1333 VAL C1334 -1 O ARG C1333 N GLU C1330 CRYST1 140.789 140.789 112.431 90.00 90.00 120.00 P 61 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007103 0.004101 0.000000 0.00000 SCALE2 0.000000 0.008202 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008894 0.00000