HEADER HYDROLASE 13-NOV-06 2NVJ TITLE NMR STRUCTURES OF TRANSMEMBRANE SEGMENT FROM SUBUNIT A FROM THE YEAST TITLE 2 PROTON V-ATPASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 25MER PEPTIDE FROM VACUOLAR ATP SYNTHASE SUBUNIT A, COMPND 3 VACUOLAR ISOFORM; COMPND 4 CHAIN: A; COMPND 5 SYNONYM: SMTM7, V-ATPASE, V-ATPASE A SUBUNIT, VACUOLAR PROTON PUMP A COMPND 6 SUBUNIT, V-ATPASE 95 KDA SUBUNIT, VACUOLAR PH PROTEIN 1; COMPND 7 EC: 3.6.3.14; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THIS SEQUENCE SOURCE 4 OCCURS NATURALLY IN THE YEAST. KEYWDS ALFA HELIX, 3, 10 HELIX, PI HELIX, HYDROLASE EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR M.A.HEMMINGA,C.P.VAN MIERLO,R.WECHSELBERGER,E.R.DE JONG,A.M.DUARTE REVDAT 4 27-DEC-23 2NVJ 1 REMARK REVDAT 3 16-MAR-22 2NVJ 1 REMARK REVDAT 2 24-FEB-09 2NVJ 1 VERSN REVDAT 1 02-OCT-07 2NVJ 0 JRNL AUTH A.M.DUARTE,E.R.DE JONG,R.WECHSELBERGER,C.P.VAN MIERLO, JRNL AUTH 2 M.A.HEMMINGA JRNL TITL SEGMENT TM7 FROM THE CYTOPLASMIC HEMI-CHANNEL FROM JRNL TITL 2 V(O)-H(+)-V-ATPASE INCLUDES A FLEXIBLE REGION THAT HAS A JRNL TITL 3 POTENTIAL ROLE IN PROTON TRANSLOCATION JRNL REF BIOCHIM.BIOPHYS.ACTA V.1768 2263 2007 JRNL REFN ISSN 0006-3002 JRNL PMID 17573038 JRNL DOI 10.1016/J.BBAMEM.2007.05.014 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE REMARK 3 -KUNSTLEVE,JIANG,KUSZEWSKI,NILGES, PANNU,READ,RICE, REMARK 3 SIMONSON,WARREN REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NVJ COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 17-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040353. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 2MM SMTM7 PEPTIDE (NATURAL REMARK 210 ABUNDANCE LABELING); 100% D6-DMSO REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D TOCSY; 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 900 MHZ REMARK 210 SPECTROMETER MODEL : DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, ARIA 1.2, SPARKY REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 20 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 18 TYR A 13 CE1 TYR A 13 CZ 0.088 REMARK 500 18 TYR A 13 CZ TYR A 13 CE2 -0.089 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 4 -5.92 63.21 REMARK 500 1 ASN A 5 -54.75 -145.41 REMARK 500 1 ALA A 11 -58.74 65.80 REMARK 500 1 LEU A 19 31.08 -149.59 REMARK 500 1 ALA A 22 -35.08 -146.04 REMARK 500 2 ASN A 5 -51.58 -151.69 REMARK 500 2 THR A 10 -64.15 -148.03 REMARK 500 2 ALA A 11 -45.85 70.79 REMARK 500 2 TRP A 17 94.46 -67.58 REMARK 500 2 ALA A 18 -58.59 -175.97 REMARK 500 3 ASN A 5 -49.52 170.38 REMARK 500 3 ALA A 11 -66.08 62.94 REMARK 500 3 ALA A 22 -38.23 -148.43 REMARK 500 4 ASN A 5 -51.00 -176.40 REMARK 500 4 ALA A 11 -46.86 67.97 REMARK 500 4 LEU A 16 -70.19 -89.57 REMARK 500 4 TRP A 17 85.98 53.33 REMARK 500 4 LEU A 21 -58.15 -152.03 REMARK 500 4 ALA A 22 -42.05 -141.43 REMARK 500 5 CYS A 3 -85.78 -114.32 REMARK 500 5 LEU A 4 25.00 177.01 REMARK 500 5 ASN A 5 -46.61 171.42 REMARK 500 5 ALA A 11 -47.61 66.87 REMARK 500 5 LEU A 21 176.12 68.01 REMARK 500 5 ALA A 22 -40.67 -138.11 REMARK 500 6 ASN A 5 -47.36 170.91 REMARK 500 6 ALA A 11 2.39 59.88 REMARK 500 6 LEU A 16 -63.58 74.27 REMARK 500 7 ASN A 5 -55.94 176.39 REMARK 500 7 VAL A 7 -60.48 -104.76 REMARK 500 7 ALA A 11 -65.91 69.80 REMARK 500 7 LEU A 16 90.37 -67.30 REMARK 500 7 ALA A 18 -78.34 70.10 REMARK 500 7 LEU A 19 47.98 -89.49 REMARK 500 8 ASN A 5 -46.10 -178.78 REMARK 500 8 THR A 10 -60.79 -95.22 REMARK 500 8 ALA A 11 -63.80 65.79 REMARK 500 9 ASN A 5 -44.96 169.10 REMARK 500 9 THR A 10 -42.81 -145.84 REMARK 500 9 ALA A 11 -9.99 69.43 REMARK 500 9 TRP A 17 -42.76 72.29 REMARK 500 9 LEU A 21 157.36 72.46 REMARK 500 10 ASN A 5 -67.40 178.60 REMARK 500 10 SER A 8 -63.68 -92.71 REMARK 500 10 THR A 10 -47.52 -166.05 REMARK 500 10 SER A 12 -54.83 -140.66 REMARK 500 10 TRP A 17 -28.86 -145.26 REMARK 500 10 LEU A 21 -81.81 -94.52 REMARK 500 11 ASN A 5 -51.50 175.58 REMARK 500 12 ASN A 5 -52.15 165.11 REMARK 500 REMARK 500 THIS ENTRY HAS 93 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL DBREF 2NVJ A 1 25 UNP P32563 VPH1_YEAST 720 744 SEQRES 1 A 25 GLU PHE CYS LEU ASN CYS VAL SER HIS THR ALA SER TYR SEQRES 2 A 25 LEU ARG LEU TRP ALA LEU SER LEU ALA HIS ALA GLN HELIX 1 1 ALA A 11 LEU A 16 1 6 HELIX 2 2 TRP A 17 LEU A 19 5 3 SSBOND 1 CYS A 3 CYS A 6 1555 1555 2.03 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1