HEADER STRUCTURAL GENOMICS/UNKNOWN FUNCTION 13-NOV-06 2NVM TITLE CRYSTAL STRUCTURE OF FDXN ELEMENT EXCISION CONTROLLING FACTOR XISI TITLE 2 (YP_321976.1) FROM ANABAENA VARIABILIS ATCC 29413 AT 2.19 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: FDXN ELEMENT EXCISION CONTROLLING FACTOR XISI; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ANABAENA VARIABILIS ATCC 29413; SOURCE 3 ORGANISM_TAXID: 240292; SOURCE 4 STRAIN: ATCC 29413 / PCC 7937; SOURCE 5 GENE: YP_321976.1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS YP_321976.1, FDXN ELEMENT EXCISION CONTROLLING FACTOR XISI, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, JOINT KEYWDS 3 CENTER FOR STRUCTURAL GENOMICS, JCSG, STRUCTURAL GENOMICS-UNKNOWN KEYWDS 4 FUNCTION COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 7 25-JAN-23 2NVM 1 SEQADV LINK REVDAT 6 18-OCT-17 2NVM 1 REMARK REVDAT 5 24-SEP-14 2NVM 1 JRNL REVDAT 4 10-SEP-14 2NVM 1 JRNL REVDAT 3 13-JUL-11 2NVM 1 VERSN REVDAT 2 24-FEB-09 2NVM 1 VERSN REVDAT 1 12-DEC-06 2NVM 0 JRNL AUTH W.C.HWANG,J.W.GOLDEN,J.PASCUAL,D.XU,A.CHELTSOV,A.GODZIK JRNL TITL SITE-SPECIFIC RECOMBINATION OF NITROGEN-FIXATION GENES IN JRNL TITL 2 CYANOBACTERIA BY XISF-XISH-XISI COMPLEX: STRUCTURES AND JRNL TITL 3 MODELS. JRNL REF PROTEINS 2014 JRNL REFN ESSN 1097-0134 JRNL PMID 25179344 JRNL DOI 10.1002/PROT.24679 REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 77.15 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.203 REMARK 3 R VALUE (WORKING SET) : 0.201 REMARK 3 FREE R VALUE : 0.244 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 917 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1220 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.69 REMARK 3 BIN R VALUE (WORKING SET) : 0.2900 REMARK 3 BIN FREE R VALUE SET COUNT : 67 REMARK 3 BIN FREE R VALUE : 0.2870 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1754 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 57 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 49.03 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 45.91 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.51000 REMARK 3 B22 (A**2) : 0.51000 REMARK 3 B33 (A**2) : -0.76000 REMARK 3 B12 (A**2) : 0.25000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.179 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.132 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.416 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1839 ; 0.016 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 1247 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2499 ; 1.895 ; 1.941 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3046 ; 1.614 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 223 ; 3.223 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 90 ;35.127 ;23.889 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 335 ;10.470 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 12 ;10.615 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 279 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2010 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 368 ; 0.003 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 271 ; 0.150 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1181 ; 0.131 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 829 ; 0.137 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 894 ; 0.066 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 55 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 9 ; 0.122 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 21 ; 0.134 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 6 ; 0.077 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1333 ; 1.940 ; 3.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 442 ; 0.356 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1764 ; 2.640 ; 5.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 872 ; 4.351 ; 8.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 729 ; 5.850 ;11.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : 1 REMARK 3 REMARK 3 NCS GROUP NUMBER : 1 REMARK 3 CHAIN NAMES : A B REMARK 3 NUMBER OF COMPONENTS NCS GROUP : 1 REMARK 3 COMPONENT C SSSEQI TO C SSSEQI CODE REMARK 3 1 A 3 A 117 6 REMARK 3 1 B 3 B 117 6 REMARK 3 GROUP CHAIN COUNT RMS WEIGHT REMARK 3 LOOSE POSITIONAL 1 A (A): 1392 ; 0.460 ; 5.000 REMARK 3 LOOSE THERMAL 1 A (A**2): 1392 ; 3.510 ;10.000 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 24 REMARK 3 RESIDUE RANGE : A 38 A 118 REMARK 3 ORIGIN FOR THE GROUP (A): 48.5870 60.9660 -33.7470 REMARK 3 T TENSOR REMARK 3 T11: -0.2870 T22: -0.2925 REMARK 3 T33: -0.0374 T12: 0.0347 REMARK 3 T13: -0.0374 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 4.7275 L22: 2.2745 REMARK 3 L33: 2.0466 L12: -1.8926 REMARK 3 L13: 0.1848 L23: 0.7253 REMARK 3 S TENSOR REMARK 3 S11: 0.1084 S12: 0.2982 S13: -0.1561 REMARK 3 S21: -0.1274 S22: -0.0590 S23: 0.2541 REMARK 3 S31: 0.0355 S32: 0.1094 S33: -0.0494 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 24 REMARK 3 RESIDUE RANGE : B 38 B 124 REMARK 3 ORIGIN FOR THE GROUP (A): 65.4150 52.7840 -37.9340 REMARK 3 T TENSOR REMARK 3 T11: -0.2100 T22: -0.0955 REMARK 3 T33: -0.0107 T12: 0.0849 REMARK 3 T13: -0.0136 T23: -0.1175 REMARK 3 L TENSOR REMARK 3 L11: 6.0764 L22: 3.6942 REMARK 3 L33: 3.4037 L12: -0.3506 REMARK 3 L13: -1.0536 L23: -0.3719 REMARK 3 S TENSOR REMARK 3 S11: 0.0237 S12: 0.6839 S13: -0.5105 REMARK 3 S21: -0.2063 S22: 0.1639 S23: -0.0583 REMARK 3 S31: 0.2932 S32: 0.3132 S33: -0.1876 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS. REMARK 3 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE REMARK 3 INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY REMARK 3 OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 REMARK 3 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. REMARK 3 3. RESIDUES 1, 25-37, 119-125 IN CHAIN A AND 1, 25-37 IN CHAIN B REMARK 3 ARE DISORDERED AND NOT INCLUDED IN THE MODEL. REMARK 3 4. ATOM RECORDS CONTAIN RESIDUAL B FACTORS ONLY. REMARK 4 REMARK 4 2NVM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 15-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040356. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-SEP-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000, 0.9795, 0.9792 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18064 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 62.380 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 10.40 REMARK 200 R MERGE (I) : 0.10700 REMARK 200 R SYM (I) : 0.10700 REMARK 200 FOR THE DATA SET : 12.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.31 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 10.70 REMARK 200 R MERGE FOR SHELL (I) : 1.37500 REMARK 200 R SYM FOR SHELL (I) : 1.37500 REMARK 200 FOR SHELL : 1.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHELX, SHELXD, AUTOSHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.86 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30.0% PEG-6000, 0.1M MES, PH 6.0, REMARK 280 VAPOR DIFFUSION, SITTING DROP, NANODROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 61 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+5/6 REMARK 290 6555 X-Y,X,Z+1/6 REMARK 290 7555 Y,X,-Z+1/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+2/3 REMARK 290 10555 -Y,-X,-Z+5/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+1/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 25.69200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 51.38400 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 38.53800 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 64.23000 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 12.84600 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 25.69200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 51.38400 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 64.23000 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 38.53800 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 12.84600 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 300 SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING REMARK 300 SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY REMARK 300 SIGNIFICANT OLIGOMERIZATION STATE. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2650 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 10960 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 GLN A 25 REMARK 465 PRO A 26 REMARK 465 ALA A 27 REMARK 465 THR A 28 REMARK 465 ALA A 29 REMARK 465 THR A 30 REMARK 465 GLU A 31 REMARK 465 THR A 32 REMARK 465 LYS A 33 REMARK 465 ILE A 34 REMARK 465 SER A 35 REMARK 465 ASP A 36 REMARK 465 ASP A 37 REMARK 465 LEU A 119 REMARK 465 THR A 120 REMARK 465 GLU A 121 REMARK 465 PHE A 122 REMARK 465 ALA A 123 REMARK 465 ILE A 124 REMARK 465 ALA A 125 REMARK 465 GLY B 0 REMARK 465 MSE B 1 REMARK 465 GLN B 25 REMARK 465 PRO B 26 REMARK 465 ALA B 27 REMARK 465 THR B 28 REMARK 465 ALA B 29 REMARK 465 THR B 30 REMARK 465 GLU B 31 REMARK 465 THR B 32 REMARK 465 LYS B 33 REMARK 465 ILE B 34 REMARK 465 SER B 35 REMARK 465 ASP B 36 REMARK 465 ASP B 37 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 13 OE1 OE2 REMARK 470 LYS A 66 CD CE NZ REMARK 470 GLU B 50 CD OE1 OE2 REMARK 470 GLN B 51 OE1 NE2 REMARK 470 LYS B 66 NZ REMARK 470 GLN B 104 CD OE1 NE2 REMARK 470 GLU B 121 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS B 59 CB CYS B 59 SG -0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 45 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 ARG A 52 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 HIS A 112 CB - CA - C ANGL. DEV. = 14.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 113 134.51 -39.29 REMARK 500 ASP B 63 79.48 -108.20 REMARK 500 GLN B 69 89.91 -156.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 367675 RELATED DB: TARGETDB DBREF 2NVM A 1 125 UNP Q3MD55 Q3MD55_ANAVT 1 125 DBREF 2NVM B 1 125 UNP Q3MD55 Q3MD55_ANAVT 1 125 SEQADV 2NVM GLY A 0 UNP Q3MD55 EXPRESSION TAG SEQADV 2NVM GLY B 0 UNP Q3MD55 EXPRESSION TAG SEQRES 1 A 126 GLY MSE ASP LYS LEU THR HIS TYR ARG HIS THR ILE GLN SEQRES 2 A 126 GLU ILE ILE LYS LYS TYR TYR ASP LEU SER ASN SER GLN SEQRES 3 A 126 PRO ALA THR ALA THR GLU THR LYS ILE SER ASP ASP LEU SEQRES 4 A 126 PRO ASP THR VAL GLY ASP ARG LEU ILE ILE ASP GLU GLN SEQRES 5 A 126 ARG ASP GLN TYR LEU TRP LEU CYS CYS GLY TRP ASP GLY SEQRES 6 A 126 LYS LYS ARG VAL GLN HIS ILE ILE LEU TYR LEU GLN ILE SEQRES 7 A 126 GLN ASN GLY LYS ILE TRP ILE GLU GLU ASP SER THR ASN SEQRES 8 A 126 LEU ALA ILE VAL ASP GLU MSE LEU VAL ALA GLY ILE PRO SEQRES 9 A 126 GLN THR ASP ILE ILE LEU GLY PHE HIS HIS PRO SER LYS SEQRES 10 A 126 ARG GLY LEU THR GLU PHE ALA ILE ALA SEQRES 1 B 126 GLY MSE ASP LYS LEU THR HIS TYR ARG HIS THR ILE GLN SEQRES 2 B 126 GLU ILE ILE LYS LYS TYR TYR ASP LEU SER ASN SER GLN SEQRES 3 B 126 PRO ALA THR ALA THR GLU THR LYS ILE SER ASP ASP LEU SEQRES 4 B 126 PRO ASP THR VAL GLY ASP ARG LEU ILE ILE ASP GLU GLN SEQRES 5 B 126 ARG ASP GLN TYR LEU TRP LEU CYS CYS GLY TRP ASP GLY SEQRES 6 B 126 LYS LYS ARG VAL GLN HIS ILE ILE LEU TYR LEU GLN ILE SEQRES 7 B 126 GLN ASN GLY LYS ILE TRP ILE GLU GLU ASP SER THR ASN SEQRES 8 B 126 LEU ALA ILE VAL ASP GLU MSE LEU VAL ALA GLY ILE PRO SEQRES 9 B 126 GLN THR ASP ILE ILE LEU GLY PHE HIS HIS PRO SER LYS SEQRES 10 B 126 ARG GLY LEU THR GLU PHE ALA ILE ALA MODRES 2NVM MSE A 97 MET SELENOMETHIONINE MODRES 2NVM MSE B 97 MET SELENOMETHIONINE HET MSE A 97 8 HET MSE B 97 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 2(C5 H11 N O2 SE) FORMUL 3 HOH *57(H2 O) HELIX 1 1 ASP A 2 SER A 24 1 23 HELIX 2 2 LEU A 91 ALA A 100 1 10 HELIX 3 3 PRO A 103 THR A 105 5 3 HELIX 4 4 HIS A 113 ARG A 117 5 5 HELIX 5 5 ASP B 2 ASN B 23 1 22 HELIX 6 6 LEU B 91 ALA B 100 1 10 HELIX 7 7 PRO B 103 THR B 105 5 3 HELIX 8 8 HIS B 113 ARG B 117 5 5 SHEET 1 A 5 GLY A 43 ASP A 49 0 SHEET 2 A 5 GLN A 54 ASP A 63 -1 O LEU A 56 N ILE A 47 SHEET 3 A 5 LYS A 66 GLN A 78 -1 O VAL A 68 N GLY A 61 SHEET 4 A 5 LYS A 81 GLU A 86 -1 O TRP A 83 N GLN A 76 SHEET 5 A 5 ILE A 107 LEU A 109 1 O ILE A 108 N ILE A 82 SHEET 1 B 5 GLY B 43 ASP B 49 0 SHEET 2 B 5 GLN B 54 ASP B 63 -1 O LEU B 56 N ILE B 47 SHEET 3 B 5 LYS B 66 GLN B 78 -1 O VAL B 68 N GLY B 61 SHEET 4 B 5 LYS B 81 GLU B 86 -1 O TRP B 83 N GLN B 76 SHEET 5 B 5 ILE B 107 LEU B 109 1 O ILE B 108 N ILE B 84 LINK C GLU A 96 N MSE A 97 1555 1555 1.33 LINK C MSE A 97 N LEU A 98 1555 1555 1.34 LINK C GLU B 96 N MSE B 97 1555 1555 1.33 LINK C MSE B 97 N LEU B 98 1555 1555 1.34 CRYST1 122.440 122.440 77.076 90.00 90.00 120.00 P 61 2 2 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008170 0.004710 0.000000 0.00000 SCALE2 0.000000 0.009430 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012970 0.00000