HEADER CYTOKINE,SIGNALING PROTEIN 14-NOV-06 2NWG TITLE STRUCTURE OF CXCL12:HEPARIN DISACCHARIDE COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: STROMAL CELL-DERIVED FACTOR 1; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: RESIDUES 22-88; COMPND 5 SYNONYM: CXCL12; SDF-1; PRE-B CELL GROWTH-STIMULATING FACTOR; PBSF; COMPND 6 HIRH; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: CXCL12, SDF1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET22B KEYWDS PROTEIN-GLYCOSAMINOGLYCAN COMPLEX, CYTOKINE, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.W.MURPHY,Y.CHO,E.LOLIS REVDAT 7 30-OCT-24 2NWG 1 REMARK REVDAT 6 27-DEC-23 2NWG 1 HETSYN REVDAT 5 29-JUL-20 2NWG 1 COMPND REMARK SEQADV HET REVDAT 5 2 1 HETNAM FORMUL LINK SITE REVDAT 5 3 1 ATOM REVDAT 4 18-OCT-17 2NWG 1 REMARK REVDAT 3 24-FEB-09 2NWG 1 VERSN REVDAT 2 10-APR-07 2NWG 1 JRNL REVDAT 1 13-FEB-07 2NWG 0 JRNL AUTH J.W.MURPHY,Y.CHO,A.SACHPATZIDIS,C.FAN,M.E.HODSDON,E.LOLIS JRNL TITL STRUCTURAL AND FUNCTIONAL BASIS OF CXCL12 (STROMAL JRNL TITL 2 CELL-DERIVED FACTOR-1{ALPHA}) BINDING TO HEPARIN JRNL REF J.BIOL.CHEM. V. 282 10018 2007 JRNL REFN ISSN 0021-9258 JRNL PMID 17264079 JRNL DOI 10.1074/JBC.M608796200 REMARK 2 REMARK 2 RESOLUTION. 2.07 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.07 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 23.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 9589 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.241 REMARK 3 R VALUE (WORKING SET) : 0.240 REMARK 3 FREE R VALUE : 0.265 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 459 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.07 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.12 REMARK 3 REFLECTION IN BIN (WORKING SET) : 668 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 33 REMARK 3 BIN FREE R VALUE : 0.3630 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1087 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 70 REMARK 3 SOLVENT ATOMS : 50 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.46 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.09000 REMARK 3 B22 (A**2) : -0.02000 REMARK 3 B33 (A**2) : -0.07000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.268 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.203 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.940 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.931 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1184 ; 0.025 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 1615 ; 2.519 ; 2.050 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 130 ; 8.317 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 52 ;35.449 ;23.462 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 214 ;20.706 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;21.320 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 189 ; 0.211 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 836 ; 0.009 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 475 ; 0.257 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 775 ; 0.318 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 55 ; 0.222 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 73 ; 0.261 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.251 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 667 ; 1.370 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1084 ; 2.255 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 517 ; 1.654 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 531 ; 2.373 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NWG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040386. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9627 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.070 REMARK 200 RESOLUTION RANGE LOW (A) : 25.582 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : 0.05700 REMARK 200 FOR THE DATA SET : 31.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.07 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.50 REMARK 200 R MERGE FOR SHELL (I) : 0.36700 REMARK 200 R SYM FOR SHELL (I) : 0.36700 REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.26 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: GROWN IN 2M AMMONIUM SULFATE, 0.1M REMARK 280 TRISHCL PH 8.50. SOAKED IN 20 MM PEG-8000, 1M TRISHCL PH 8.5, 16 REMARK 280 MM DISACCHARIDE. , SOAKING, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.24600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 35.87350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.48250 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 35.87350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.24600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 28.48250 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC CONSISTS OF A BIOLOGICAL DIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8890 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET B 0 REMARK 465 LYS B 1 REMARK 465 PRO B 2 REMARK 465 VAL B 3 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU B 26 CB - CG - CD2 ANGL. DEV. = 10.9 DEGREES REMARK 500 ILE B 38 CG1 - CB - CG2 ANGL. DEV. = -13.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR B 7 109.58 -57.76 REMARK 500 ASN B 44 -74.28 104.34 REMARK 500 REMARK 500 REMARK: NULL DBREF 2NWG A 1 67 UNP P48061 SDF1_HUMAN 22 88 DBREF 2NWG B 1 67 UNP P48061 SDF1_HUMAN 22 88 SEQADV 2NWG MET A 0 UNP P48061 INITIATING METHIONINE SEQADV 2NWG ILE A 18 UNP P48061 VAL 39 CONFLICT SEQADV 2NWG MET B 0 UNP P48061 INITIATING METHIONINE SEQADV 2NWG ILE B 18 UNP P48061 VAL 39 CONFLICT SEQRES 1 A 68 MET LYS PRO VAL SER LEU SER TYR ARG CYS PRO CYS ARG SEQRES 2 A 68 PHE PHE GLU SER HIS ILE ALA ARG ALA ASN VAL LYS HIS SEQRES 3 A 68 LEU LYS ILE LEU ASN THR PRO ASN CYS ALA LEU GLN ILE SEQRES 4 A 68 VAL ALA ARG LEU LYS ASN ASN ASN ARG GLN VAL CYS ILE SEQRES 5 A 68 ASP PRO LYS LEU LYS TRP ILE GLN GLU TYR LEU GLU LYS SEQRES 6 A 68 ALA LEU ASN SEQRES 1 B 68 MET LYS PRO VAL SER LEU SER TYR ARG CYS PRO CYS ARG SEQRES 2 B 68 PHE PHE GLU SER HIS ILE ALA ARG ALA ASN VAL LYS HIS SEQRES 3 B 68 LEU LYS ILE LEU ASN THR PRO ASN CYS ALA LEU GLN ILE SEQRES 4 B 68 VAL ALA ARG LEU LYS ASN ASN ASN ARG GLN VAL CYS ILE SEQRES 5 B 68 ASP PRO LYS LEU LYS TRP ILE GLN GLU TYR LEU GLU LYS SEQRES 6 B 68 ALA LEU ASN HET SGN C 1 20 HET UAP C 2 15 HET SGN D 1 20 HET UAP D 2 15 HETNAM SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D-GLUCOPYRANOSE HETNAM UAP 4-DEOXY-2-O-SULFO-ALPHA-L-THREO-HEX-4-ENOPYRANURONIC HETNAM 2 UAP ACID HETSYN SGN N,O6-DISULFO-GLUCOSAMINE; 6-O-SULFO-N-SULFO-ALPHA-D- HETSYN 2 SGN GLUCOSAMINE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-ALPHA-D- HETSYN 3 SGN GLUCOSE; 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-D-GLUCOSE; HETSYN 4 SGN 2-DEOXY-6-O-SULFO-2-(SULFOAMINO)-GLUCOSE HETSYN UAP 4-DEOXY-2-O-SULFO-ALPHA-L-THREO-HEX-4-ENURONIC ACID; 4- HETSYN 2 UAP DEOXY-2-O-SULFO-L-THREO-HEX-4-ENURONIC ACID; 4-DEOXY- HETSYN 3 UAP 2-O-SULFO-THREO-HEX-4-ENURONIC ACID FORMUL 3 SGN 2(C6 H13 N O11 S2) FORMUL 3 UAP 2(C6 H8 O9 S) FORMUL 5 HOH *50(H2 O) HELIX 1 1 ALA A 19 ALA A 21 5 3 HELIX 2 2 TRP A 57 ASN A 67 1 11 HELIX 3 3 ALA B 19 ALA B 21 5 3 HELIX 4 4 LEU B 55 ASN B 67 1 13 SHEET 1 A 6 GLN A 48 CYS A 50 0 SHEET 2 A 6 ILE A 38 LEU A 42 -1 N ALA A 40 O VAL A 49 SHEET 3 A 6 VAL A 23 LEU A 29 -1 N LYS A 24 O ARG A 41 SHEET 4 A 6 VAL B 23 LEU B 29 -1 O LEU B 26 N ILE A 28 SHEET 5 A 6 ILE B 38 LEU B 42 -1 O VAL B 39 N LYS B 27 SHEET 6 A 6 GLN B 48 CYS B 50 -1 O VAL B 49 N ALA B 40 SSBOND 1 CYS A 9 CYS A 34 1555 1555 2.04 SSBOND 2 CYS A 11 CYS A 50 1555 1555 2.03 SSBOND 3 CYS B 9 CYS B 34 1555 1555 2.05 SSBOND 4 CYS B 11 CYS B 50 1555 1555 2.04 LINK O4 SGN C 1 C1 UAP C 2 1555 1555 1.48 LINK O4 SGN D 1 C1 UAP D 2 1555 1555 1.45 CRYST1 36.492 56.965 71.747 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.027403 0.000000 0.000000 0.00000 SCALE2 0.000000 0.017555 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013938 0.00000 TER 560 ASN A 67 TER 1089 ASN B 67 HETATM 1090 C1 SGN C 1 -19.473 1.555 9.562 0.87 94.02 C HETATM 1091 C2 SGN C 1 -18.424 0.542 9.081 0.87 93.61 C HETATM 1092 C3 SGN C 1 -19.164 -0.767 9.167 0.87 93.59 C HETATM 1093 C4 SGN C 1 -20.720 -0.593 9.083 0.87 93.78 C HETATM 1094 C5 SGN C 1 -21.257 0.615 8.236 0.87 94.83 C HETATM 1095 C6 SGN C 1 -22.809 0.742 8.435 0.87 96.33 C HETATM 1096 N2 SGN C 1 -17.863 0.805 7.713 0.87 93.25 N HETATM 1097 O1 SGN C 1 -18.765 2.611 10.244 0.87 94.15 O HETATM 1098 O3 SGN C 1 -18.844 -1.276 10.455 0.87 93.66 O HETATM 1099 O4 SGN C 1 -21.448 -1.708 8.481 0.87 92.76 O HETATM 1100 O5 SGN C 1 -20.476 1.845 8.492 0.87 94.39 O HETATM 1101 O6 SGN C 1 -23.598 0.400 7.221 0.87 98.16 O HETATM 1102 S1 SGN C 1 -16.482 1.780 7.836 0.87 92.62 S HETATM 1103 O1S SGN C 1 -16.983 3.200 7.906 0.87 92.60 O HETATM 1104 O2S SGN C 1 -15.498 1.672 6.704 0.87 92.67 O HETATM 1105 O3S SGN C 1 -15.792 1.366 9.113 0.87 92.63 O HETATM 1106 S2 SGN C 1 -24.918 1.051 6.967 0.87 99.09 S HETATM 1107 O4S SGN C 1 -25.802 0.937 8.200 0.87 99.04 O HETATM 1108 O5S SGN C 1 -25.619 0.415 5.793 0.87 99.04 O HETATM 1109 O6S SGN C 1 -24.722 2.514 6.624 0.87 99.27 O HETATM 1110 S UAP C 2 -19.769 -2.288 5.963 0.87 92.69 S HETATM 1111 C1 UAP C 2 -21.247 -3.115 8.881 0.87 92.35 C HETATM 1112 C2 UAP C 2 -20.534 -4.003 7.811 0.87 92.31 C HETATM 1113 O2 UAP C 2 -20.618 -3.464 6.420 0.87 92.55 O HETATM 1114 C3 UAP C 2 -21.071 -5.468 8.036 0.87 92.15 C HETATM 1115 O3 UAP C 2 -20.269 -6.518 7.408 0.87 91.69 O HETATM 1116 C4 UAP C 2 -21.177 -5.742 9.577 0.87 92.00 C HETATM 1117 C5 UAP C 2 -20.919 -4.739 10.545 0.87 91.62 C HETATM 1118 O5 UAP C 2 -20.562 -3.475 10.128 0.87 91.79 O HETATM 1119 C6 UAP C 2 -21.016 -5.011 12.088 0.87 91.32 C HETATM 1120 O1S UAP C 2 -18.474 -2.189 6.750 0.87 92.55 O HETATM 1121 O2S UAP C 2 -19.483 -2.377 4.473 0.87 92.34 O HETATM 1122 O3S UAP C 2 -20.546 -1.003 6.112 0.87 92.32 O HETATM 1123 O6B UAP C 2 -21.331 -6.145 12.523 0.87 91.34 O HETATM 1124 O6A UAP C 2 -20.768 -4.057 12.838 0.87 90.59 O HETATM 1125 C1 SGN D 1 4.938 1.949 12.197 1.00 66.62 C HETATM 1126 C2 SGN D 1 4.564 1.464 10.757 1.00 66.34 C HETATM 1127 C3 SGN D 1 5.601 0.436 10.315 1.00 66.19 C HETATM 1128 C4 SGN D 1 5.861 -0.551 11.468 1.00 65.14 C HETATM 1129 C5 SGN D 1 4.886 -0.511 12.699 1.00 65.54 C HETATM 1130 C6 SGN D 1 5.357 -1.412 13.851 1.00 64.86 C HETATM 1131 N2 SGN D 1 3.227 0.826 10.697 1.00 66.70 N HETATM 1132 O1 SGN D 1 4.531 3.398 12.506 1.00 66.26 O HETATM 1133 O3 SGN D 1 6.845 1.022 9.812 1.00 67.51 O HETATM 1134 O4 SGN D 1 5.934 -1.811 10.793 1.00 63.97 O HETATM 1135 O5 SGN D 1 4.652 0.871 13.202 1.00 65.80 O HETATM 1136 O6 SGN D 1 4.491 -1.218 15.031 1.00 64.84 O HETATM 1137 S1 SGN D 1 2.557 0.780 9.200 1.00 67.08 S HETATM 1138 O1S SGN D 1 1.088 0.643 9.283 1.00 67.74 O HETATM 1139 O2S SGN D 1 3.094 -0.394 8.446 1.00 67.36 O HETATM 1140 O3S SGN D 1 2.808 1.967 8.382 1.00 67.35 O HETATM 1141 S2 SGN D 1 4.843 -0.462 16.248 1.00 64.85 S HETATM 1142 O4S SGN D 1 3.866 0.646 16.509 1.00 64.58 O HETATM 1143 O5S SGN D 1 6.216 0.169 16.068 1.00 62.97 O HETATM 1144 O6S SGN D 1 4.806 -1.365 17.455 1.00 63.35 O HETATM 1145 S UAP D 2 4.875 -4.035 6.470 1.00 58.20 S HETATM 1146 C1 UAP D 2 4.888 -2.284 9.902 1.00 63.05 C HETATM 1147 C2 UAP D 2 5.605 -2.890 8.683 1.00 62.59 C HETATM 1148 O2 UAP D 2 4.653 -3.561 7.829 1.00 60.75 O HETATM 1149 C3 UAP D 2 6.676 -3.889 9.195 1.00 64.05 C HETATM 1150 O3 UAP D 2 7.848 -3.147 9.549 1.00 65.07 O HETATM 1151 C4 UAP D 2 6.115 -4.761 10.366 1.00 64.10 C HETATM 1152 C5 UAP D 2 4.922 -4.405 11.046 1.00 64.01 C HETATM 1153 O5 UAP D 2 4.193 -3.274 10.733 1.00 63.06 O HETATM 1154 C6 UAP D 2 4.381 -5.297 12.173 1.00 64.56 C HETATM 1155 O1S UAP D 2 5.556 -3.015 5.608 1.00 59.30 O HETATM 1156 O2S UAP D 2 5.696 -5.288 6.443 1.00 56.59 O HETATM 1157 O3S UAP D 2 3.488 -4.216 6.029 1.00 56.93 O HETATM 1158 O6B UAP D 2 5.016 -6.341 12.445 1.00 65.68 O HETATM 1159 O6A UAP D 2 3.329 -4.931 12.761 1.00 64.39 O HETATM 1160 O HOH A 70 -0.822 -12.775 15.120 1.00 38.29 O HETATM 1161 O HOH A 71 -29.355 -16.683 5.370 1.00 38.39 O HETATM 1162 O HOH A 72 -11.250 -13.094 10.353 1.00 64.73 O HETATM 1163 O HOH A 73 -5.321 2.995 21.943 1.00 44.68 O HETATM 1164 O HOH A 74 -3.777 3.590 -4.322 1.00 52.21 O HETATM 1165 O HOH A 75 -21.496 -19.015 19.497 1.00 55.21 O HETATM 1166 O HOH A 76 1.990 -10.440 16.149 1.00 59.41 O HETATM 1167 O HOH A 77 -1.317 -1.247 17.145 1.00 63.55 O HETATM 1168 O HOH A 78 -13.731 -5.919 -8.118 1.00 59.34 O HETATM 1169 O HOH A 79 -17.902 -13.989 10.114 1.00 53.98 O HETATM 1170 O HOH A 80 -22.817 -14.163 16.713 1.00 41.18 O HETATM 1171 O HOH A 81 -24.075 -12.259 6.018 1.00 38.08 O HETATM 1172 O HOH A 82 -10.953 -18.455 13.572 1.00 68.18 O HETATM 1173 O HOH A 83 -3.006 -13.967 15.585 1.00 40.34 O HETATM 1174 O HOH A 84 5.240 -9.074 12.569 1.00 42.83 O HETATM 1175 O HOH A 85 -16.016 -13.308 2.840 1.00 78.73 O HETATM 1176 O HOH A 86 -16.491 -8.177 4.231 1.00 46.83 O HETATM 1177 O HOH A 87 -24.628 -14.217 19.190 1.00 93.32 O HETATM 1178 O HOH A 88 -14.882 -4.144 -0.225 1.00 83.94 O HETATM 1179 O HOH A 89 6.459 -1.278 20.365 1.00 69.58 O HETATM 1180 O HOH A 90 -0.326 1.156 0.915 1.00 41.21 O HETATM 1181 O HOH A 91 -23.810 -11.289 20.202 1.00 42.25 O HETATM 1182 O HOH A 92 -19.075 -8.140 6.144 1.00 97.25 O HETATM 1183 O HOH A 93 -28.603 -5.346 4.532 1.00 40.79 O HETATM 1184 O HOH A 94 -26.911 -0.235 3.702 1.00 66.40 O HETATM 1185 O HOH A 95 -26.794 -1.473 1.353 1.00 46.20 O HETATM 1186 O HOH A 96 -28.667 2.464 3.947 1.00 64.02 O HETATM 1187 O HOH A 97 -14.426 -14.273 0.041 1.00 66.81 O HETATM 1188 O HOH A 98 -25.227 -21.808 3.083 1.00 70.30 O HETATM 1189 O HOH A 99 -28.782 -20.123 1.373 1.00 69.67 O HETATM 1190 O HOH A 100 -10.334 4.327 9.762 1.00 32.96 O HETATM 1191 O HOH A 101 -24.213 -7.594 11.625 1.00 38.34 O HETATM 1192 O HOH A 102 -22.772 -8.382 9.776 1.00 74.58 O HETATM 1193 O HOH A 103 3.162 -4.041 15.342 1.00 56.22 O HETATM 1194 O HOH B 68 -9.196 4.663 21.817 1.00 34.45 O HETATM 1195 O HOH B 69 -11.638 -14.620 14.036 1.00 41.81 O HETATM 1196 O HOH B 70 -8.118 -3.505 27.586 1.00 34.62 O HETATM 1197 O HOH B 71 -14.821 -11.611 20.538 1.00 56.46 O HETATM 1198 O HOH B 72 -6.424 7.705 16.604 1.00 32.61 O HETATM 1199 O HOH B 73 -5.176 9.728 20.045 1.00 54.38 O HETATM 1200 O HOH B 74 -19.588 11.776 26.160 1.00 44.32 O HETATM 1201 O HOH B 75 -16.727 6.151 37.214 1.00 36.16 O HETATM 1202 O HOH B 76 -18.488 8.307 31.765 1.00 52.00 O HETATM 1203 O HOH B 77 -26.131 7.029 15.183 1.00 47.33 O HETATM 1204 O HOH B 78 -11.606 -5.483 40.286 1.00 68.89 O HETATM 1205 O HOH B 79 0.776 4.354 21.642 1.00 90.90 O HETATM 1206 O HOH B 80 5.118 9.929 12.939 1.00 36.81 O HETATM 1207 O HOH B 81 -24.413 6.132 23.620 1.00 47.71 O HETATM 1208 O HOH B 82 5.701 12.005 7.974 1.00 86.15 O HETATM 1209 O HOH B 83 -6.106 -15.850 21.416 1.00 43.64 O CONECT 80 283 CONECT 93 410 CONECT 283 80 CONECT 410 93 CONECT 609 812 CONECT 622 939 CONECT 812 609 CONECT 939 622 CONECT 1090 1091 1097 1100 CONECT 1091 1090 1092 1096 CONECT 1092 1091 1093 1098 CONECT 1093 1092 1094 1099 CONECT 1094 1093 1095 1100 CONECT 1095 1094 1101 CONECT 1096 1091 1102 CONECT 1097 1090 CONECT 1098 1092 CONECT 1099 1093 1111 CONECT 1100 1090 1094 CONECT 1101 1095 1106 CONECT 1102 1096 1103 1104 1105 CONECT 1103 1102 CONECT 1104 1102 CONECT 1105 1102 CONECT 1106 1101 1107 1108 1109 CONECT 1107 1106 CONECT 1108 1106 CONECT 1109 1106 CONECT 1110 1113 1120 1121 1122 CONECT 1111 1099 1112 1118 CONECT 1112 1111 1113 1114 CONECT 1113 1110 1112 CONECT 1114 1112 1115 1116 CONECT 1115 1114 CONECT 1116 1114 1117 CONECT 1117 1116 1118 1119 CONECT 1118 1111 1117 CONECT 1119 1117 1123 1124 CONECT 1120 1110 CONECT 1121 1110 CONECT 1122 1110 CONECT 1123 1119 CONECT 1124 1119 CONECT 1125 1126 1132 1135 CONECT 1126 1125 1127 1131 CONECT 1127 1126 1128 1133 CONECT 1128 1127 1129 1134 CONECT 1129 1128 1130 1135 CONECT 1130 1129 1136 CONECT 1131 1126 1137 CONECT 1132 1125 CONECT 1133 1127 CONECT 1134 1128 1146 CONECT 1135 1125 1129 CONECT 1136 1130 1141 CONECT 1137 1131 1138 1139 1140 CONECT 1138 1137 CONECT 1139 1137 CONECT 1140 1137 CONECT 1141 1136 1142 1143 1144 CONECT 1142 1141 CONECT 1143 1141 CONECT 1144 1141 CONECT 1145 1148 1155 1156 1157 CONECT 1146 1134 1147 1153 CONECT 1147 1146 1148 1149 CONECT 1148 1145 1147 CONECT 1149 1147 1150 1151 CONECT 1150 1149 CONECT 1151 1149 1152 CONECT 1152 1151 1153 1154 CONECT 1153 1146 1152 CONECT 1154 1152 1158 1159 CONECT 1155 1145 CONECT 1156 1145 CONECT 1157 1145 CONECT 1158 1154 CONECT 1159 1154 MASTER 291 0 4 4 6 0 0 6 1207 2 78 12 END