HEADER SIGNALING PROTEIN,TRANSFERASE 14-NOV-06 2NWH TITLE CARBOHYDRATE KINASE FROM AGROBACTERIUM TUMEFACIENS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CARBOHYDRATE KINASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AGR_C_3442P; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR.; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58; SOURCE 5 ATCC: 33970; SOURCE 6 GENE: ATU1875; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS CARBOHYDRATE KINASE; STRUCTURAL GENOMICS; APC6199; PSI-2; PROTEIN KEYWDS 2 STRUCTURE INITIATIVE 2; MIDWEST CENTER FOR STRUCTURAL GENOMICS; KEYWDS 3 MCSG, SIGNALING PROTEIN, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.OSIPIUK,X.XU,J.GU,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK,MIDWEST CENTER AUTHOR 2 FOR STRUCTURAL GENOMICS (MCSG) REVDAT 5 27-DEC-23 2NWH 1 REMARK SEQADV LINK REVDAT 4 18-OCT-17 2NWH 1 REMARK REVDAT 3 13-JUL-11 2NWH 1 VERSN REVDAT 2 24-FEB-09 2NWH 1 VERSN REVDAT 1 12-DEC-06 2NWH 0 JRNL AUTH J.OSIPIUK,X.XU,J.GU,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK JRNL TITL X-RAY CRYSTAL STRUCTURE OF CARBOHYDRATE KINASE FROM JRNL TITL 2 AGROBACTERIUM TUMEFACIENS JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.86 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.86 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.70 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.1 REMARK 3 NUMBER OF REFLECTIONS : 29010 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.197 REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.700 REMARK 3 FREE R VALUE TEST SET COUNT : 2244 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.86 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.91 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1830 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.24 REMARK 3 BIN R VALUE (WORKING SET) : 0.3510 REMARK 3 BIN FREE R VALUE SET COUNT : 165 REMARK 3 BIN FREE R VALUE : 0.3740 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2268 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.20 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : -0.01000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.149 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.140 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.098 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.171 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.939 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2376 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3228 ; 1.548 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 328 ; 5.643 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 95 ;35.312 ;23.474 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 419 ;15.348 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 23 ;16.844 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 380 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1778 ; 0.006 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1174 ; 0.226 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 1640 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 224 ; 0.178 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): 5 ; 0.081 ; 0.200 REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 69 ; 0.226 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 19 ; 0.222 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1555 ; 0.809 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2483 ; 1.393 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 834 ; 2.713 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 734 ; 4.412 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NWH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040387. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-JUN-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SBC-3 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29531 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.860 REMARK 200 RESOLUTION RANGE LOW (A) : 35.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 16.20 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07800 REMARK 200 FOR THE DATA SET : 41.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.86 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 9.20 REMARK 200 R MERGE FOR SHELL (I) : 0.90600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.040 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, SOLVE, HKL-3000, DM, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2 M CALCIUM CHLORIDE, 7% PEG 3350, REMARK 280 4% MPD, PH 7.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.07200 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 34.53600 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 34.53600 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 69.07200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 3020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 25730 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -87.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 113.89500 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 65.75731 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 69.07200 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 GLU A 197 REMARK 465 THR A 198 REMARK 465 ALA A 199 REMARK 465 GLU A 200 REMARK 465 ASN A 201 REMARK 465 ALA A 313 REMARK 465 GLY A 314 REMARK 465 SER A 315 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 297 O HOH A 663 1.95 REMARK 500 OD1 ASP A 13 O HOH A 575 2.09 REMARK 500 O HOH A 440 O HOH A 674 2.14 REMARK 500 O HOH A 518 O HOH A 660 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 2 -29.89 -142.64 REMARK 500 ILE A 166 -54.51 71.73 REMARK 500 ASN A 230 -158.91 -140.27 REMARK 500 THR A 232 -13.44 -145.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 19 OE2 REMARK 620 2 GLU A 19 OE1 50.9 REMARK 620 3 ASP A 111 OD2 132.2 172.2 REMARK 620 4 ASP A 111 OD1 170.6 131.3 47.2 REMARK 620 5 HOH A 539 O 64.3 104.2 74.4 119.3 REMARK 620 6 HOH A 545 O 91.4 96.4 90.7 79.3 121.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 176 O REMARK 620 2 ASP A 297 OD1 160.6 REMARK 620 3 HOH A 455 O 91.3 71.5 REMARK 620 4 HOH A 509 O 71.9 117.8 95.7 REMARK 620 5 HOH A 587 O 75.4 97.6 98.6 144.5 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 247 OD2 REMARK 620 2 ASP A 247 OD1 53.1 REMARK 620 3 THR A 249 OG1 128.6 76.2 REMARK 620 4 THR A 249 O 107.4 88.6 75.8 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC6199 RELATED DB: TARGETDB DBREF 2NWH A 1 313 UNP Q8UE86 Q8UE86_AGRT5 1 313 SEQADV 2NWH GLY A -1 UNP Q8UE86 CLONING ARTIFACT SEQADV 2NWH HIS A 0 UNP Q8UE86 CLONING ARTIFACT SEQADV 2NWH GLY A 314 UNP Q8UE86 CLONING ARTIFACT SEQADV 2NWH SER A 315 UNP Q8UE86 CLONING ARTIFACT SEQRES 1 A 317 GLY HIS MET LYS LYS ILE LEU VAL LEU GLY GLY ALA HIS SEQRES 2 A 317 ILE ASP ARG ARG GLY MET ILE GLU THR GLU THR ALA PRO SEQRES 3 A 317 GLY ALA SER ASN PRO GLY SER TRP MET GLU GLU ALA GLY SEQRES 4 A 317 GLY GLY GLY PHE ASN ALA ALA ARG ASN LEU SER ARG LEU SEQRES 5 A 317 GLY PHE GLU VAL ARG ILE ILE ALA PRO ARG GLY GLY ASP SEQRES 6 A 317 VAL THR GLY GLU VAL VAL ALA GLU ALA ALA ARG GLN ALA SEQRES 7 A 317 GLY VAL GLU ASP THR PRO PHE THR PHE LEU ASP ARG ARG SEQRES 8 A 317 THR PRO SER TYR THR ALA ILE LEU GLU ARG ASP GLY ASN SEQRES 9 A 317 LEU VAL ILE ALA LEU ALA ASP MET ASP LEU TYR LYS LEU SEQRES 10 A 317 PHE THR PRO ARG ARG LEU LYS VAL ARG ALA VAL ARG GLU SEQRES 11 A 317 ALA ILE ILE ALA SER ASP PHE LEU LEU CYS ASP ALA ASN SEQRES 12 A 317 LEU PRO GLU ASP THR LEU THR ALA LEU GLY LEU ILE ALA SEQRES 13 A 317 ARG ALA CYS GLU LYS PRO LEU ALA ALA ILE ALA ILE SER SEQRES 14 A 317 PRO ALA LYS ALA VAL LYS LEU LYS ALA ALA LEU GLY ASP SEQRES 15 A 317 ILE ASP ILE LEU PHE MET ASN GLU ALA GLU ALA ARG ALA SEQRES 16 A 317 LEU THR GLY GLU THR ALA GLU ASN VAL ARG ASP TRP PRO SEQRES 17 A 317 ASN ILE LEU ARG LYS ALA GLY LEU SER GLY GLY VAL VAL SEQRES 18 A 317 THR ARG GLY ALA SER GLU VAL VAL ALA PHE ASN GLY THR SEQRES 19 A 317 GLU LYS ALA ILE LEU HIS PRO PRO LEU ILE ARG GLU VAL SEQRES 20 A 317 LYS ASP VAL THR GLY ALA GLY ASP ALA MET ALA SER GLY SEQRES 21 A 317 TYR LEU ALA ALA ILE ALA GLU GLY LYS THR ILE ARG GLU SEQRES 22 A 317 ALA LEU ARG GLN GLY ALA ALA ALA ALA ALA ILE THR VAL SEQRES 23 A 317 GLN SER SER PHE ALA THR SER GLN ASP LEU SER LYS ASP SEQRES 24 A 317 SER VAL GLU ALA MET LEU GLY LEU VAL PRO GLN ALA GLU SEQRES 25 A 317 MET LEU ALA GLY SER HET CA A 401 1 HET CA A 402 1 HET CL A 403 1 HET NA A 404 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETNAM NA SODIUM ION FORMUL 2 CA 2(CA 2+) FORMUL 4 CL CL 1- FORMUL 5 NA NA 1+ FORMUL 6 HOH *277(H2 O) HELIX 1 1 GLY A 38 LEU A 50 1 13 HELIX 2 2 ASP A 63 ALA A 76 1 14 HELIX 3 3 MET A 110 PHE A 116 5 7 HELIX 4 4 THR A 117 LYS A 122 1 6 HELIX 5 5 VAL A 123 SER A 133 1 11 HELIX 6 6 PRO A 143 CYS A 157 1 15 HELIX 7 7 SER A 167 VAL A 172 1 6 HELIX 8 8 LYS A 173 LYS A 175 5 3 HELIX 9 9 ALA A 177 ILE A 181 5 5 HELIX 10 10 GLU A 188 GLY A 196 1 9 HELIX 11 11 ASP A 204 ALA A 212 1 9 HELIX 12 12 GLY A 252 GLU A 265 1 14 HELIX 13 13 THR A 268 GLN A 285 1 18 HELIX 14 14 THR A 290 LEU A 294 5 5 HELIX 15 15 SER A 295 GLY A 304 1 10 SHEET 1 A10 GLU A 79 ASP A 80 0 SHEET 2 A10 GLU A 53 ILE A 57 1 N VAL A 54 O GLU A 79 SHEET 3 A10 LYS A 3 LEU A 7 1 N VAL A 6 O ILE A 57 SHEET 4 A10 PHE A 135 ASP A 139 1 O LEU A 137 N LEU A 7 SHEET 5 A10 LEU A 161 ILE A 164 1 O ALA A 162 N LEU A 136 SHEET 6 A10 ILE A 183 ASN A 187 1 O PHE A 185 N ALA A 163 SHEET 7 A10 GLY A 217 ARG A 221 1 O VAL A 218 N LEU A 184 SHEET 8 A10 GLU A 225 PHE A 229 -1 O GLU A 225 N ARG A 221 SHEET 9 A10 LYS A 234 LEU A 237 -1 O ALA A 235 N ALA A 228 SHEET 10 A10 ALA A 309 MET A 311 -1 O GLU A 310 N ILE A 236 SHEET 1 B 4 GLY A 30 GLY A 37 0 SHEET 2 B 4 HIS A 11 ILE A 18 -1 N ASP A 13 O GLU A 35 SHEET 3 B 4 SER A 92 LEU A 97 1 O LEU A 97 N GLY A 16 SHEET 4 B 4 LEU A 103 ASP A 109 -1 O ASP A 109 N SER A 92 SHEET 1 C 2 PRO A 59 GLY A 61 0 SHEET 2 C 2 PHE A 83 PHE A 85 1 O PHE A 85 N ARG A 60 LINK OE2 GLU A 19 CA CA A 402 1555 1555 2.38 LINK OE1 GLU A 19 CA CA A 402 1555 1555 2.69 LINK OD2 ASP A 111 CA CA A 402 6765 1555 2.46 LINK OD1 ASP A 111 CA CA A 402 6765 1555 2.94 LINK O ALA A 176 CA CA A 401 1555 1555 2.38 LINK OD2 ASP A 247 NA NA A 404 1555 1555 2.56 LINK OD1 ASP A 247 NA NA A 404 1555 1555 2.32 LINK OG1 THR A 249 NA NA A 404 1555 1555 2.57 LINK O THR A 249 NA NA A 404 1555 1555 2.36 LINK OD1 ASP A 297 CA CA A 401 4545 1555 2.87 LINK CA CA A 401 O HOH A 455 1555 1555 2.28 LINK CA CA A 401 O HOH A 509 1555 1555 2.67 LINK CA CA A 401 O HOH A 587 1555 1555 2.50 LINK CA CA A 402 O HOH A 539 1555 1555 2.50 LINK CA CA A 402 O HOH A 545 1555 1555 2.44 SITE 1 AC1 5 ALA A 176 ASP A 297 HOH A 455 HOH A 509 SITE 2 AC1 5 HOH A 587 SITE 1 AC2 4 GLU A 19 ASP A 111 HOH A 539 HOH A 545 SITE 1 AC3 5 GLY A 38 GLY A 39 ASN A 141 HOH A 479 SITE 2 AC3 5 HOH A 658 SITE 1 AC4 2 ASP A 247 THR A 249 CRYST1 75.930 75.930 103.608 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013170 0.007604 0.000000 0.00000 SCALE2 0.000000 0.015207 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009652 0.00000