HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 16-NOV-06 2NX4 TITLE THE CRYSTAL STRUCTURE OF ATHE PUTATIVE TETR-FAMILY TRANSCRIPTIONAL TITLE 2 REGULATOR RHA06780 FROM RHODOCOCCUS SP. RHA1. COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRANSCRIPTIONAL REGULATOR, TETR FAMILY PROTEIN; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RHODOCOCCUS SP. RHA1; SOURCE 3 ORGANISM_TAXID: 101510; SOURCE 4 STRAIN: RHA1; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15B KEYWDS TETR, HTH DNA BINDING MOTIF, STRUCTURAL GENOMICS, PSI-2, PROTEIN KEYWDS 2 STRUCTURE INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, KEYWDS 3 UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR R.ZHANG,E.EVDOKIMOVA,M.KUDRITSKAM,A.SAVCHENKO,A.EDWARDS,A.JOACHIMIAK, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 4 27-DEC-23 2NX4 1 SEQADV REVDAT 3 13-JUL-11 2NX4 1 VERSN REVDAT 2 24-FEB-09 2NX4 1 VERSN REVDAT 1 19-DEC-06 2NX4 0 JRNL AUTH R.ZHANG,E.EVDOKIMOVA,M.KUDRITSKAM,A.SAVCHENKO,A.EDWARDS, JRNL AUTH 2 A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A TETR-FAMILY TRANSCRIPTIONAL JRNL TITL 2 REGULATOR FROM RHODOCOCCUS SP. JRNL REF TO BE PUBLISHED 2006 JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 85617 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4513 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5075 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.15 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 286 REMARK 3 BIN FREE R VALUE : 0.3250 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5976 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 611 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : 19.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.28 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.97000 REMARK 3 B22 (A**2) : -0.75000 REMARK 3 B33 (A**2) : -0.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.25000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.108 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.106 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.070 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.241 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.957 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.938 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6050 ; 0.011 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8168 ; 1.123 ; 1.959 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 758 ; 4.425 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 306 ;33.845 ;23.595 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1094 ;13.286 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 72 ;14.973 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 922 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4596 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 3290 ; 0.204 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 4325 ; 0.294 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 532 ; 0.155 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 71 ; 0.190 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 30 ; 0.152 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3913 ; 0.738 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 6024 ; 1.206 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2425 ; 2.427 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 2144 ; 3.804 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 100 REMARK 3 RESIDUE RANGE : A 101 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 18.5250 49.8050 54.9990 REMARK 3 T TENSOR REMARK 3 T11: -0.0385 T22: -0.0283 REMARK 3 T33: -0.0272 T12: 0.0006 REMARK 3 T13: 0.0380 T23: -0.0102 REMARK 3 L TENSOR REMARK 3 L11: 0.8915 L22: 0.4461 REMARK 3 L33: 0.5850 L12: 0.0800 REMARK 3 L13: 0.3546 L23: -0.0472 REMARK 3 S TENSOR REMARK 3 S11: -0.0206 S12: 0.0667 S13: -0.0583 REMARK 3 S21: 0.0535 S22: 0.0123 S23: 0.0186 REMARK 3 S31: 0.0432 S32: -0.0070 S33: 0.0083 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1 B 100 REMARK 3 RESIDUE RANGE : B 101 B 193 REMARK 3 ORIGIN FOR THE GROUP (A): 21.9530 67.6120 70.5280 REMARK 3 T TENSOR REMARK 3 T11: 0.0903 T22: -0.0240 REMARK 3 T33: -0.0585 T12: 0.0453 REMARK 3 T13: -0.0659 T23: -0.0161 REMARK 3 L TENSOR REMARK 3 L11: 1.0312 L22: 1.1042 REMARK 3 L33: 0.2038 L12: -0.6580 REMARK 3 L13: -0.4577 L23: 0.2717 REMARK 3 S TENSOR REMARK 3 S11: -0.1503 S12: -0.1074 S13: 0.1343 REMARK 3 S21: 0.3366 S22: 0.1255 S23: -0.1670 REMARK 3 S31: -0.0014 S32: 0.0493 S33: 0.0248 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 7 C 100 REMARK 3 RESIDUE RANGE : C 101 C 193 REMARK 3 ORIGIN FOR THE GROUP (A): 31.2190 74.3580 29.1730 REMARK 3 T TENSOR REMARK 3 T11: -0.0240 T22: -0.0335 REMARK 3 T33: -0.0509 T12: 0.0205 REMARK 3 T13: 0.0283 T23: 0.0085 REMARK 3 L TENSOR REMARK 3 L11: 0.6288 L22: 1.6905 REMARK 3 L33: 1.2396 L12: -0.4670 REMARK 3 L13: -0.1647 L23: -0.1544 REMARK 3 S TENSOR REMARK 3 S11: 0.0205 S12: 0.0245 S13: 0.0466 REMARK 3 S21: -0.0813 S22: -0.0051 S23: -0.1580 REMARK 3 S31: 0.0171 S32: 0.1434 S33: -0.0153 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 2 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 7 D 100 REMARK 3 RESIDUE RANGE : D 101 D 193 REMARK 3 ORIGIN FOR THE GROUP (A): 9.6850 70.7230 35.8540 REMARK 3 T TENSOR REMARK 3 T11: -0.0517 T22: -0.0237 REMARK 3 T33: -0.0169 T12: 0.0256 REMARK 3 T13: 0.0241 T23: 0.0292 REMARK 3 L TENSOR REMARK 3 L11: 0.6715 L22: 2.3972 REMARK 3 L33: 1.2205 L12: 0.2870 REMARK 3 L13: -0.2768 L23: -0.3676 REMARK 3 S TENSOR REMARK 3 S11: 0.0048 S12: 0.0549 S13: 0.0461 REMARK 3 S21: 0.0272 S22: 0.0943 S23: 0.3817 REMARK 3 S31: 0.0082 S32: -0.1619 S33: -0.0991 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NX4 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040410. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-NOV-05 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9798 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 85617 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 69.010 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.09000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.4600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: HKL-3000, SOLVE, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M AMMONIUM FORMATE, 26% PEG3350, PH REMARK 280 6.8, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 57.41300 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THIS PROTEIN EXIST AS DIMER. THERE ARE TWO DIMERS (A/B, C/D) REMARK 300 IN THE ASYMMETRIC UNIT. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3750 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 15420 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -26.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 0 REMARK 465 VAL C 1 REMARK 465 PRO C 2 REMARK 465 LYS C 3 REMARK 465 LEU C 4 REMARK 465 VAL C 5 REMARK 465 ASP C 6 REMARK 465 GLY D 0 REMARK 465 VAL D 1 REMARK 465 PRO D 2 REMARK 465 LYS D 3 REMARK 465 LEU D 4 REMARK 465 VAL D 5 REMARK 465 ASP D 6 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CD1 LEU B 21 OE2 GLU B 38 1.37 REMARK 500 NH1 ARG D 58 OE2 GLU D 62 2.16 REMARK 500 O ALA A 121 O HOH A 248 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 CD2 HIS C 7 N HIS D 7 1655 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU C 38 CB GLU C 38 CG -0.146 REMARK 500 GLU C 38 CD GLU C 38 OE2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 MET A 119 N - CA - CB ANGL. DEV. = 13.2 DEGREES REMARK 500 MET C 185 CG - SD - CE ANGL. DEV. = -9.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP C 8 -70.92 -129.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC5889 RELATED DB: TARGETDB DBREF 2NX4 A 2 193 UNP Q0SCU8 Q0SCU8_RHOSR 2 193 DBREF 2NX4 B 2 193 UNP Q0SCU8 Q0SCU8_RHOSR 2 193 DBREF 2NX4 C 2 193 UNP Q0SCU8 Q0SCU8_RHOSR 2 193 DBREF 2NX4 D 2 193 UNP Q0SCU8 Q0SCU8_RHOSR 2 193 SEQADV 2NX4 GLY A 0 UNP Q0SCU8 CLONING ARTIFACT SEQADV 2NX4 VAL A 1 UNP Q0SCU8 CLONING ARTIFACT SEQADV 2NX4 GLY B 0 UNP Q0SCU8 CLONING ARTIFACT SEQADV 2NX4 VAL B 1 UNP Q0SCU8 CLONING ARTIFACT SEQADV 2NX4 GLY C 0 UNP Q0SCU8 CLONING ARTIFACT SEQADV 2NX4 VAL C 1 UNP Q0SCU8 CLONING ARTIFACT SEQADV 2NX4 GLY D 0 UNP Q0SCU8 CLONING ARTIFACT SEQADV 2NX4 VAL D 1 UNP Q0SCU8 CLONING ARTIFACT SEQRES 1 A 194 GLY VAL PRO LYS LEU VAL ASP HIS ASP GLU ARG ARG ARG SEQRES 2 A 194 SER ILE THR ALA ALA ALA TRP ARG LEU ILE ALA ALA ARG SEQRES 3 A 194 GLY ILE GLU ALA ALA ASN MET ARG ASP ILE ALA THR GLU SEQRES 4 A 194 ALA GLY TYR THR ASN GLY ALA LEU SER HIS TYR PHE ALA SEQRES 5 A 194 GLY LYS ASP GLU ILE LEU ARG THR SER TYR GLU HIS ILE SEQRES 6 A 194 SER GLU ALA THR ASP ARG ARG ILE ALA GLU ALA LEU GLY SEQRES 7 A 194 ASP ALA THR GLY LEU ASP ALA LEU ARG ILE LEU CYS ARG SEQRES 8 A 194 GLU VAL MET PRO ILE ASN GLU GLU GLN LEU LEU GLU ALA SEQRES 9 A 194 ARG ILE ALA ALA SER LEU TRP PRO ARG ALA MET TYR ASP SEQRES 10 A 194 GLU GLN MET ALA ALA THR ASN ARG ARG THR MET ASP ASN SEQRES 11 A 194 TRP ARG GLU GLN MET ALA ILE PHE LEU GLU GLN ALA ARG SEQRES 12 A 194 GLU GLU GLY SER VAL GLY ASP ILE ASP VAL THR ILE VAL SEQRES 13 A 194 VAL GLU GLN LEU LEU ASN MET MET MET GLY MET GLN ILE SEQRES 14 A 194 LEU GLY VAL LEU THR PRO GLY GLU THR SER SER GLU ARG SEQRES 15 A 194 GLN LEU GLU MET LEU GLU GLN PHE VAL ALA ALA LEU SEQRES 1 B 194 GLY VAL PRO LYS LEU VAL ASP HIS ASP GLU ARG ARG ARG SEQRES 2 B 194 SER ILE THR ALA ALA ALA TRP ARG LEU ILE ALA ALA ARG SEQRES 3 B 194 GLY ILE GLU ALA ALA ASN MET ARG ASP ILE ALA THR GLU SEQRES 4 B 194 ALA GLY TYR THR ASN GLY ALA LEU SER HIS TYR PHE ALA SEQRES 5 B 194 GLY LYS ASP GLU ILE LEU ARG THR SER TYR GLU HIS ILE SEQRES 6 B 194 SER GLU ALA THR ASP ARG ARG ILE ALA GLU ALA LEU GLY SEQRES 7 B 194 ASP ALA THR GLY LEU ASP ALA LEU ARG ILE LEU CYS ARG SEQRES 8 B 194 GLU VAL MET PRO ILE ASN GLU GLU GLN LEU LEU GLU ALA SEQRES 9 B 194 ARG ILE ALA ALA SER LEU TRP PRO ARG ALA MET TYR ASP SEQRES 10 B 194 GLU GLN MET ALA ALA THR ASN ARG ARG THR MET ASP ASN SEQRES 11 B 194 TRP ARG GLU GLN MET ALA ILE PHE LEU GLU GLN ALA ARG SEQRES 12 B 194 GLU GLU GLY SER VAL GLY ASP ILE ASP VAL THR ILE VAL SEQRES 13 B 194 VAL GLU GLN LEU LEU ASN MET MET MET GLY MET GLN ILE SEQRES 14 B 194 LEU GLY VAL LEU THR PRO GLY GLU THR SER SER GLU ARG SEQRES 15 B 194 GLN LEU GLU MET LEU GLU GLN PHE VAL ALA ALA LEU SEQRES 1 C 194 GLY VAL PRO LYS LEU VAL ASP HIS ASP GLU ARG ARG ARG SEQRES 2 C 194 SER ILE THR ALA ALA ALA TRP ARG LEU ILE ALA ALA ARG SEQRES 3 C 194 GLY ILE GLU ALA ALA ASN MET ARG ASP ILE ALA THR GLU SEQRES 4 C 194 ALA GLY TYR THR ASN GLY ALA LEU SER HIS TYR PHE ALA SEQRES 5 C 194 GLY LYS ASP GLU ILE LEU ARG THR SER TYR GLU HIS ILE SEQRES 6 C 194 SER GLU ALA THR ASP ARG ARG ILE ALA GLU ALA LEU GLY SEQRES 7 C 194 ASP ALA THR GLY LEU ASP ALA LEU ARG ILE LEU CYS ARG SEQRES 8 C 194 GLU VAL MET PRO ILE ASN GLU GLU GLN LEU LEU GLU ALA SEQRES 9 C 194 ARG ILE ALA ALA SER LEU TRP PRO ARG ALA MET TYR ASP SEQRES 10 C 194 GLU GLN MET ALA ALA THR ASN ARG ARG THR MET ASP ASN SEQRES 11 C 194 TRP ARG GLU GLN MET ALA ILE PHE LEU GLU GLN ALA ARG SEQRES 12 C 194 GLU GLU GLY SER VAL GLY ASP ILE ASP VAL THR ILE VAL SEQRES 13 C 194 VAL GLU GLN LEU LEU ASN MET MET MET GLY MET GLN ILE SEQRES 14 C 194 LEU GLY VAL LEU THR PRO GLY GLU THR SER SER GLU ARG SEQRES 15 C 194 GLN LEU GLU MET LEU GLU GLN PHE VAL ALA ALA LEU SEQRES 1 D 194 GLY VAL PRO LYS LEU VAL ASP HIS ASP GLU ARG ARG ARG SEQRES 2 D 194 SER ILE THR ALA ALA ALA TRP ARG LEU ILE ALA ALA ARG SEQRES 3 D 194 GLY ILE GLU ALA ALA ASN MET ARG ASP ILE ALA THR GLU SEQRES 4 D 194 ALA GLY TYR THR ASN GLY ALA LEU SER HIS TYR PHE ALA SEQRES 5 D 194 GLY LYS ASP GLU ILE LEU ARG THR SER TYR GLU HIS ILE SEQRES 6 D 194 SER GLU ALA THR ASP ARG ARG ILE ALA GLU ALA LEU GLY SEQRES 7 D 194 ASP ALA THR GLY LEU ASP ALA LEU ARG ILE LEU CYS ARG SEQRES 8 D 194 GLU VAL MET PRO ILE ASN GLU GLU GLN LEU LEU GLU ALA SEQRES 9 D 194 ARG ILE ALA ALA SER LEU TRP PRO ARG ALA MET TYR ASP SEQRES 10 D 194 GLU GLN MET ALA ALA THR ASN ARG ARG THR MET ASP ASN SEQRES 11 D 194 TRP ARG GLU GLN MET ALA ILE PHE LEU GLU GLN ALA ARG SEQRES 12 D 194 GLU GLU GLY SER VAL GLY ASP ILE ASP VAL THR ILE VAL SEQRES 13 D 194 VAL GLU GLN LEU LEU ASN MET MET MET GLY MET GLN ILE SEQRES 14 D 194 LEU GLY VAL LEU THR PRO GLY GLU THR SER SER GLU ARG SEQRES 15 D 194 GLN LEU GLU MET LEU GLU GLN PHE VAL ALA ALA LEU FORMUL 5 HOH *611(H2 O) HELIX 1 1 PRO A 2 GLY A 26 1 25 HELIX 2 2 ASN A 31 GLY A 40 1 10 HELIX 3 3 THR A 42 PHE A 50 1 9 HELIX 4 4 GLY A 52 GLY A 77 1 26 HELIX 5 5 THR A 80 MET A 93 1 14 HELIX 6 6 ASN A 96 MET A 114 1 19 HELIX 7 7 GLU A 117 GLY A 145 1 29 HELIX 8 8 ASP A 151 THR A 173 1 23 HELIX 9 9 SER A 178 ALA A 192 1 15 HELIX 10 10 GLY B 0 GLY B 26 1 27 HELIX 11 11 ASN B 31 GLY B 40 1 10 HELIX 12 12 THR B 42 SER B 47 1 6 HELIX 13 13 GLY B 52 GLY B 77 1 26 HELIX 14 14 THR B 80 MET B 93 1 14 HELIX 15 15 ASN B 96 MET B 114 1 19 HELIX 16 16 ASP B 116 GLY B 145 1 30 HELIX 17 17 ASP B 151 THR B 173 1 23 HELIX 18 18 SER B 178 ALA B 192 1 15 HELIX 19 19 ASP C 8 GLY C 26 1 19 HELIX 20 20 ASN C 31 GLY C 40 1 10 HELIX 21 21 THR C 42 HIS C 48 1 7 HELIX 22 22 GLY C 52 GLY C 77 1 26 HELIX 23 23 THR C 80 MET C 93 1 14 HELIX 24 24 ASN C 96 MET C 114 1 19 HELIX 25 25 ASP C 116 GLY C 145 1 30 HELIX 26 26 ASP C 151 THR C 173 1 23 HELIX 27 27 SER C 178 ALA C 192 1 15 HELIX 28 28 HIS D 7 GLY D 26 1 20 HELIX 29 29 ASN D 31 GLY D 40 1 10 HELIX 30 30 THR D 42 HIS D 48 1 7 HELIX 31 31 GLY D 52 GLY D 77 1 26 HELIX 32 32 THR D 80 MET D 93 1 14 HELIX 33 33 ASN D 96 MET D 114 1 19 HELIX 34 34 ASP D 116 GLY D 145 1 30 HELIX 35 35 ASP D 151 THR D 173 1 23 HELIX 36 36 SER D 178 ALA D 192 1 15 CRYST1 54.439 114.826 73.519 90.00 110.08 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018369 0.000000 0.006716 0.00000 SCALE2 0.000000 0.008709 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014483 0.00000