HEADER SIGNALING PROTEIN 17-NOV-06 2NXB TITLE CRYSTAL STRUCTURE OF HUMAN BROMODOMAIN CONTAINING PROTEIN 3 (BRD3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BROMODOMAIN-CONTAINING PROTEIN 3; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: BROMO 1 DOMAIN; COMPND 5 SYNONYM: RING3-LIKE PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: BRD3, KIAA0043, RING3L; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA-R3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PNIC28-BSA4 KEYWDS BRD3, BROMODOMAIN CONTAINING PROTEIN 3, ORFX, RING3 LIKE GENE, KEYWDS 2 RING3L, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS CONSORTIUM, SGC, KEYWDS 3 SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR P.FILIPPAKOPOULOS,A.BULLOCK,C.COOPER,K.KEATES,G.BERRIDGE,A.PIKE, AUTHOR 2 G.BUNKOCZI,A.EDWARDS,C.ARROWSMITH,M.SUNDSTROM,F.VON DELFT,S.KNAPP, AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (SGC) REVDAT 6 30-AUG-23 2NXB 1 REMARK SEQADV LINK REVDAT 5 18-OCT-17 2NXB 1 REMARK REVDAT 4 11-APR-12 2NXB 1 JRNL REVDAT 3 13-JUL-11 2NXB 1 VERSN REVDAT 2 24-FEB-09 2NXB 1 VERSN REVDAT 1 12-DEC-06 2NXB 0 JRNL AUTH P.FILIPPAKOPOULOS,S.PICAUD,M.MANGOS,T.KEATES,J.P.LAMBERT, JRNL AUTH 2 D.BARSYTE-LOVEJOY,I.FELLETAR,R.VOLKMER,S.MULLER,T.PAWSON, JRNL AUTH 3 A.C.GINGRAS,C.H.ARROWSMITH,S.KNAPP JRNL TITL HISTONE RECOGNITION AND LARGE-SCALE STRUCTURAL ANALYSIS OF JRNL TITL 2 THE HUMAN BROMODOMAIN FAMILY. JRNL REF CELL(CAMBRIDGE,MASS.) V. 149 214 2012 JRNL REFN ISSN 0092-8674 JRNL PMID 22464331 JRNL DOI 10.1016/J.CELL.2012.02.013 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 51261 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.168 REMARK 3 R VALUE (WORKING SET) : 0.168 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2748 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.44 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3709 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.2570 REMARK 3 BIN FREE R VALUE SET COUNT : 192 REMARK 3 BIN FREE R VALUE : 0.2790 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1899 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 29 REMARK 3 SOLVENT ATOMS : 277 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 17.17 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.86000 REMARK 3 B22 (A**2) : -0.29000 REMARK 3 B33 (A**2) : -0.57000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.056 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.056 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.036 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.773 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.969 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2095 ; 0.010 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 1408 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2836 ; 1.256 ; 1.946 REMARK 3 BOND ANGLES OTHERS (DEGREES): 3454 ; 2.091 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 247 ; 4.921 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 99 ;36.037 ;25.758 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 356 ;11.448 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 3 ;12.234 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 302 ; 0.071 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2277 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 392 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 458 ; 0.222 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 1366 ; 0.174 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 998 ; 0.195 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 856 ; 0.090 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 186 ; 0.144 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 25 ; 0.254 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 55 ; 0.199 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 20 ; 0.171 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1247 ; 0.543 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 478 ; 0.159 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2036 ; 0.962 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 892 ; 1.668 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 799 ; 2.489 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 10 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 34 A 46 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1861 -24.9903 3.5352 REMARK 3 T TENSOR REMARK 3 T11: -0.0212 T22: -0.1026 REMARK 3 T33: -0.0978 T12: 0.0261 REMARK 3 T13: -0.0488 T23: -0.0188 REMARK 3 L TENSOR REMARK 3 L11: 10.5328 L22: 3.7673 REMARK 3 L33: 4.8091 L12: -2.8580 REMARK 3 L13: 3.6122 L23: -2.9110 REMARK 3 S TENSOR REMARK 3 S11: 0.3277 S12: 0.2463 S13: -0.5181 REMARK 3 S21: -0.5494 S22: -0.1818 S23: 0.1139 REMARK 3 S31: 0.5061 S32: 0.1515 S33: -0.1459 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 47 A 73 REMARK 3 ORIGIN FOR THE GROUP (A): -2.7194 -4.7014 -3.1466 REMARK 3 T TENSOR REMARK 3 T11: -0.0369 T22: -0.0207 REMARK 3 T33: -0.1152 T12: 0.0442 REMARK 3 T13: -0.0131 T23: 0.0146 REMARK 3 L TENSOR REMARK 3 L11: 3.7047 L22: 2.2530 REMARK 3 L33: 2.2357 L12: -0.8056 REMARK 3 L13: 0.8658 L23: -0.4019 REMARK 3 S TENSOR REMARK 3 S11: 0.0316 S12: 0.1562 S13: 0.3333 REMARK 3 S21: -0.3707 S22: -0.1176 S23: -0.1759 REMARK 3 S31: -0.0401 S32: 0.3929 S33: 0.0860 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 74 A 123 REMARK 3 ORIGIN FOR THE GROUP (A): 1.4439 -8.8942 4.8584 REMARK 3 T TENSOR REMARK 3 T11: -0.1148 T22: -0.0834 REMARK 3 T33: -0.1379 T12: 0.0132 REMARK 3 T13: 0.0013 T23: 0.0168 REMARK 3 L TENSOR REMARK 3 L11: 2.0406 L22: 6.0836 REMARK 3 L33: 1.3318 L12: -2.5838 REMARK 3 L13: -0.1979 L23: 0.6140 REMARK 3 S TENSOR REMARK 3 S11: 0.0761 S12: 0.1010 S13: 0.1295 REMARK 3 S21: -0.1657 S22: -0.1300 S23: -0.2269 REMARK 3 S31: -0.0500 S32: 0.0829 S33: 0.0540 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 124 A 138 REMARK 3 ORIGIN FOR THE GROUP (A): -11.0573 -10.4435 7.2129 REMARK 3 T TENSOR REMARK 3 T11: -0.1161 T22: -0.0798 REMARK 3 T33: -0.1078 T12: -0.0028 REMARK 3 T13: -0.0132 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 0.4395 L22: 11.6037 REMARK 3 L33: 5.9886 L12: 1.1251 REMARK 3 L13: -0.1151 L23: -6.5192 REMARK 3 S TENSOR REMARK 3 S11: -0.1743 S12: 0.1017 S13: 0.0513 REMARK 3 S21: -0.0973 S22: 0.2996 S23: 0.3548 REMARK 3 S31: -0.0056 S32: -0.3633 S33: -0.1254 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 139 A 144 REMARK 3 ORIGIN FOR THE GROUP (A): -6.9134 -28.3584 11.1801 REMARK 3 T TENSOR REMARK 3 T11: -0.0609 T22: -0.0879 REMARK 3 T33: -0.0486 T12: -0.0064 REMARK 3 T13: -0.0534 T23: -0.0374 REMARK 3 L TENSOR REMARK 3 L11: 12.8728 L22: 26.7985 REMARK 3 L33: 7.0520 L12: -17.1692 REMARK 3 L13: 0.5995 L23: -1.9622 REMARK 3 S TENSOR REMARK 3 S11: 0.4365 S12: 0.3316 S13: -0.9370 REMARK 3 S21: -0.2389 S22: -0.3153 S23: 0.9376 REMARK 3 S31: 0.4105 S32: 0.0531 S33: -0.1211 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 23 B 51 REMARK 3 ORIGIN FOR THE GROUP (A): -3.2839 4.3401 21.4754 REMARK 3 T TENSOR REMARK 3 T11: -0.0442 T22: -0.1236 REMARK 3 T33: -0.1403 T12: -0.0093 REMARK 3 T13: -0.0136 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 3.8765 L22: 1.5912 REMARK 3 L33: 1.6984 L12: 0.2478 REMARK 3 L13: -0.5948 L23: -0.1311 REMARK 3 S TENSOR REMARK 3 S11: 0.0385 S12: 0.0030 S13: 0.1050 REMARK 3 S21: 0.2037 S22: -0.0303 S23: -0.0163 REMARK 3 S31: -0.1725 S32: 0.0324 S33: -0.0082 REMARK 3 REMARK 3 TLS GROUP : 7 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 52 B 77 REMARK 3 ORIGIN FOR THE GROUP (A): -13.5112 -13.1302 28.4034 REMARK 3 T TENSOR REMARK 3 T11: -0.0245 T22: -0.0494 REMARK 3 T33: -0.0579 T12: -0.0077 REMARK 3 T13: 0.0626 T23: 0.0103 REMARK 3 L TENSOR REMARK 3 L11: 1.3017 L22: 7.7983 REMARK 3 L33: 1.9064 L12: -2.2688 REMARK 3 L13: -0.4741 L23: 2.3610 REMARK 3 S TENSOR REMARK 3 S11: -0.0617 S12: -0.2939 S13: -0.1954 REMARK 3 S21: 0.6377 S22: 0.1105 S23: 0.4848 REMARK 3 S31: 0.0972 S32: 0.0461 S33: -0.0488 REMARK 3 REMARK 3 TLS GROUP : 8 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 78 B 101 REMARK 3 ORIGIN FOR THE GROUP (A): -3.1549 -1.6409 21.0150 REMARK 3 T TENSOR REMARK 3 T11: -0.1130 T22: -0.1413 REMARK 3 T33: -0.1242 T12: 0.0025 REMARK 3 T13: -0.0075 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 1.6307 L22: 1.9204 REMARK 3 L33: 2.2001 L12: 0.6930 REMARK 3 L13: 0.5384 L23: 0.1902 REMARK 3 S TENSOR REMARK 3 S11: 0.0250 S12: 0.0021 S13: -0.0520 REMARK 3 S21: 0.1177 S22: -0.0345 S23: 0.0049 REMARK 3 S31: -0.0202 S32: -0.0167 S33: 0.0095 REMARK 3 REMARK 3 TLS GROUP : 9 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 102 B 124 REMARK 3 ORIGIN FOR THE GROUP (A): -17.2025 -10.4232 19.5703 REMARK 3 T TENSOR REMARK 3 T11: -0.1225 T22: -0.1069 REMARK 3 T33: -0.0590 T12: 0.0076 REMARK 3 T13: 0.0179 T23: -0.0155 REMARK 3 L TENSOR REMARK 3 L11: 5.0231 L22: 5.6804 REMARK 3 L33: 2.0357 L12: 2.7935 REMARK 3 L13: -0.2431 L23: -0.2303 REMARK 3 S TENSOR REMARK 3 S11: 0.0357 S12: -0.0870 S13: 0.0186 REMARK 3 S21: 0.1702 S22: -0.0359 S23: 0.5808 REMARK 3 S31: 0.0138 S32: -0.2768 S33: 0.0002 REMARK 3 REMARK 3 TLS GROUP : 10 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 125 B 143 REMARK 3 ORIGIN FOR THE GROUP (A): -18.3973 3.6987 18.5701 REMARK 3 T TENSOR REMARK 3 T11: -0.0844 T22: -0.0807 REMARK 3 T33: -0.0068 T12: 0.0558 REMARK 3 T13: -0.0073 T23: 0.0063 REMARK 3 L TENSOR REMARK 3 L11: 4.7203 L22: 19.7149 REMARK 3 L33: 5.7001 L12: 5.0495 REMARK 3 L13: -2.8522 L23: -6.3593 REMARK 3 S TENSOR REMARK 3 S11: 0.0226 S12: 0.1293 S13: 0.3066 REMARK 3 S21: 0.1606 S22: -0.0233 S23: 0.4464 REMARK 3 S31: -0.2979 S32: -0.0568 S33: 0.0007 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NXB COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040417. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-OCT-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9791 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54074 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.100 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : 0.08400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.45 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.00 REMARK 200 R MERGE FOR SHELL (I) : 0.39800 REMARK 200 R SYM FOR SHELL (I) : 0.39800 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1X0J REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.65 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.20M KSCN, 0.1M BTPOP, 20% PEG3350, REMARK 280 10% ETGLY, PH 8.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.75200 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 42.26150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 30.92000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 42.26150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.75200 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 30.92000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 22 REMARK 465 MET A 23 REMARK 465 PRO A 24 REMARK 465 GLU A 25 REMARK 465 VAL A 26 REMARK 465 SER A 27 REMARK 465 ASN A 28 REMARK 465 PRO A 29 REMARK 465 SER A 30 REMARK 465 LYS A 31 REMARK 465 PRO A 32 REMARK 465 GLY A 33 REMARK 465 SER B 22 REMARK 465 GLU B 144 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 34 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 48 CE NZ REMARK 470 LYS A 67 CG CD CE NZ REMARK 470 LEU A 68 CG CD1 CD2 REMARK 470 LYS A 75 CG CD CE NZ REMARK 470 LYS A 88 CD CE NZ REMARK 470 GLN A 103 CD OE1 NE2 REMARK 470 LYS A 117 CE NZ REMARK 470 LEU A 124 CD1 CD2 REMARK 470 LYS A 131 CE NZ REMARK 470 MET B 23 CG SD CE REMARK 470 ASN B 37 CG OD1 ND2 REMARK 470 GLN B 142 CG CD OE1 NE2 REMARK 470 GLU B 143 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 ND2 ASN A 37 O HOH A 405 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 68 59.17 -91.87 REMARK 500 ASN A 69 71.13 34.52 REMARK 500 ASN A 69 96.90 -30.36 REMARK 500 ASN B 79 74.74 -119.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 301 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 36 OG1 REMARK 620 2 GLN A 38 OE1 116.9 REMARK 620 3 SER A 97 OG 132.6 109.7 REMARK 620 4 ALA A 98 N 107.3 109.0 62.5 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 306 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 307 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 308 DBREF 2NXB A 24 144 UNP Q15059 BRD3_HUMAN 24 144 DBREF 2NXB B 24 144 UNP Q15059 BRD3_HUMAN 24 144 SEQADV 2NXB SER A 22 UNP Q15059 CLONING ARTIFACT SEQADV 2NXB MET A 23 UNP Q15059 CLONING ARTIFACT SEQADV 2NXB SER B 22 UNP Q15059 CLONING ARTIFACT SEQADV 2NXB MET B 23 UNP Q15059 CLONING ARTIFACT SEQRES 1 A 123 SER MET PRO GLU VAL SER ASN PRO SER LYS PRO GLY ARG SEQRES 2 A 123 LYS THR ASN GLN LEU GLN TYR MET GLN ASN VAL VAL VAL SEQRES 3 A 123 LYS THR LEU TRP LYS HIS GLN PHE ALA TRP PRO PHE TYR SEQRES 4 A 123 GLN PRO VAL ASP ALA ILE LYS LEU ASN LEU PRO ASP TYR SEQRES 5 A 123 HIS LYS ILE ILE LYS ASN PRO MET ASP MET GLY THR ILE SEQRES 6 A 123 LYS LYS ARG LEU GLU ASN ASN TYR TYR TRP SER ALA SER SEQRES 7 A 123 GLU CYS MET GLN ASP PHE ASN THR MET PHE THR ASN CYS SEQRES 8 A 123 TYR ILE TYR ASN LYS PRO THR ASP ASP ILE VAL LEU MET SEQRES 9 A 123 ALA GLN ALA LEU GLU LYS ILE PHE LEU GLN LYS VAL ALA SEQRES 10 A 123 GLN MET PRO GLN GLU GLU SEQRES 1 B 123 SER MET PRO GLU VAL SER ASN PRO SER LYS PRO GLY ARG SEQRES 2 B 123 LYS THR ASN GLN LEU GLN TYR MET GLN ASN VAL VAL VAL SEQRES 3 B 123 LYS THR LEU TRP LYS HIS GLN PHE ALA TRP PRO PHE TYR SEQRES 4 B 123 GLN PRO VAL ASP ALA ILE LYS LEU ASN LEU PRO ASP TYR SEQRES 5 B 123 HIS LYS ILE ILE LYS ASN PRO MET ASP MET GLY THR ILE SEQRES 6 B 123 LYS LYS ARG LEU GLU ASN ASN TYR TYR TRP SER ALA SER SEQRES 7 B 123 GLU CYS MET GLN ASP PHE ASN THR MET PHE THR ASN CYS SEQRES 8 B 123 TYR ILE TYR ASN LYS PRO THR ASP ASP ILE VAL LEU MET SEQRES 9 B 123 ALA GLN ALA LEU GLU LYS ILE PHE LEU GLN LYS VAL ALA SEQRES 10 B 123 GLN MET PRO GLN GLU GLU HET NA A 301 1 HET EDO A 302 4 HET EDO A 307 4 HET EDO B 303 4 HET EDO B 304 4 HET EDO B 305 4 HET EDO B 306 4 HET EDO B 308 7 HETNAM NA SODIUM ION HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 3 NA NA 1+ FORMUL 4 EDO 7(C2 H6 O2) FORMUL 11 HOH *277(H2 O) HELIX 1 1 THR A 36 VAL A 45 1 10 HELIX 2 2 VAL A 45 HIS A 53 1 9 HELIX 3 3 ALA A 56 TYR A 60 5 5 HELIX 4 4 ASP A 72 ILE A 77 1 6 HELIX 5 5 ASP A 82 ASN A 92 1 11 HELIX 6 6 SER A 97 ASN A 116 1 20 HELIX 7 7 ASP A 120 ALA A 138 1 19 HELIX 8 8 THR B 36 VAL B 45 1 10 HELIX 9 9 VAL B 45 LYS B 52 1 8 HELIX 10 10 ALA B 56 TYR B 60 5 5 HELIX 11 11 ASP B 72 ILE B 77 1 6 HELIX 12 12 ASP B 82 ASN B 92 1 11 HELIX 13 13 SER B 97 ASN B 116 1 20 HELIX 14 14 ASP B 120 GLN B 139 1 20 LINK OG1 THR A 36 NA NA A 301 1555 1555 2.86 LINK OE1 GLN A 38 NA NA A 301 1555 1555 2.90 LINK OG BSER A 97 NA NA A 301 1555 1555 3.18 LINK N ALA A 98 NA NA A 301 1555 1555 2.95 SITE 1 AC1 5 THR A 36 GLN A 38 SER A 97 ALA A 98 SITE 2 AC1 5 GLU B 91 SITE 1 AC2 5 TRP A 57 MET A 125 HOH A 429 TRP B 51 SITE 2 AC2 5 TYR B 60 SITE 1 AC3 7 VAL B 63 LEU B 70 TYR B 73 ASN B 116 SITE 2 AC3 7 HOH B 342 HOH B 384 HOH B 425 SITE 1 AC4 6 LEU A 134 ILE B 76 ILE B 77 LYS B 78 SITE 2 AC4 6 ASN B 79 ASN B 111 SITE 1 AC5 5 GLN A 54 TRP A 96 HOH A 354 HOH A 429 SITE 2 AC5 5 LYS B 87 SITE 1 AC6 6 GLN A 38 MET A 140 GLN A 142 LYS B 75 SITE 2 AC6 6 LYS B 78 ASN B 92 SITE 1 AC7 5 GLN A 139 HOH A 342 HOH A 347 ILE B 114 SITE 2 AC7 5 HOH B 312 SITE 1 AC8 7 ARG B 34 LYS B 35 HIS B 74 ILE B 77 SITE 2 AC8 7 PRO B 80 ASN B 93 HOH B 405 CRYST1 51.504 61.840 84.523 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019416 0.000000 0.000000 0.00000 SCALE2 0.000000 0.016171 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011831 0.00000