HEADER LYASE 20-NOV-06 2NYF TITLE CRYSTAL STRUCTURE OF PHENYLALANINE AMMONIA-LYASE FROM NOSTOC TITLE 2 PUNCTIFORME COMPND MOL_ID: 1; COMPND 2 MOLECULE: NOSTOC PUNCTIFORME PHENYLALANINE AMMONIA LYASE; COMPND 3 CHAIN: A; COMPND 4 EC: 4.3.1.3; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: NOSTOC PUNCTIFORME; SOURCE 3 ORGANISM_TAXID: 63737; SOURCE 4 STRAIN: PCC 73102; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PHIS8 KEYWDS METHYLIDENE IMIDAZOLONE PROSTHETIC GROUP (AUTOCATALYTICALLY FORMED BY KEYWDS 2 INTERNAL TRIPEPTIDE SEGMENT ALA167-SER168-GLY169), LYASE EXPDTA X-RAY DIFFRACTION AUTHOR G.V.LOUIE,M.C.MOFFITT,M.E.BOWMAN,J.PENCE,J.P.NOEL,B.S.MOORE REVDAT 7 18-MAR-26 2NYF 1 SEQRES REVDAT 6 09-OCT-24 2NYF 1 REMARK REVDAT 5 15-NOV-23 2NYF 1 LINK ATOM REVDAT 4 09-MAY-12 2NYF 1 COMPND REVDAT 3 13-JUL-11 2NYF 1 VERSN REVDAT 2 24-FEB-09 2NYF 1 VERSN REVDAT 1 06-FEB-07 2NYF 0 JRNL AUTH M.C.MOFFITT,G.V.LOUIE,M.E.BOWMAN,J.PENCE,J.P.NOEL,B.S.MOORE JRNL TITL DISCOVERY OF TWO CYANOBACTERIAL PHENYLALANINE AMMONIA JRNL TITL 2 LYASES: KINETIC AND STRUCTURAL CHARACTERIZATION. JRNL REF BIOCHEMISTRY V. 46 1004 2007 JRNL REFN ISSN 0006-2960 JRNL PMID 17240984 JRNL DOI 10.1021/BI061774G REMARK 2 REMARK 2 RESOLUTION. 2.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 100.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 15884 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : RANDOM REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.247 REMARK 3 FREE R VALUE : 0.305 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 770 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.50 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.61 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : 0.3200 REMARK 3 BIN FREE R VALUE : 0.3750 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : 74 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3936 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 31 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.340 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : ISOTROPIC REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.030 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 3.290 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 3.010 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.450 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NYF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040457. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-APR-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16902 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.500 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.09800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.5600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.50 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.59 REMARK 200 COMPLETENESS FOR SHELL (%) : 69.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.47500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.31 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.06 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MOPSO (PH 7.0), 21% (W/V) REMARK 280 POLYETHYLENE GLYCOL 8000, 0.2 M LITHIUM SULFATE, 2 MM REMARK 280 DITHIOTHREITOL, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 2 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X,Y,-Z REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 37.13950 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 45.74300 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 75.54900 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 37.13950 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 45.74300 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 75.54900 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 37.13950 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 45.74300 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 75.54900 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 37.13950 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 45.74300 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 75.54900 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE 222 SYMMETRIC HOMOTETRAMER IS GENERATED BY REMARK 300 CRYSTALLOGRAPHIC SYMMETRY. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 26360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 57300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -149.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 74.27900 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 91.48600 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 74.27900 REMARK 350 BIOMT2 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 -1.000000 151.09800 REMARK 350 BIOMT1 4 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 4 0.000000 -1.000000 0.000000 91.48600 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 151.09800 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1024 LIES ON A SPECIAL POSITION. REMARK 375 HOH A1027 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ASN A 2 REMARK 465 ILE A 3 REMARK 465 THR A 4 REMARK 465 SER A 5 REMARK 465 LEU A 6 REMARK 465 GLN A 7 REMARK 465 GLN A 8 REMARK 465 ASN A 9 REMARK 465 ILE A 10 REMARK 465 THR A 11 REMARK 465 ARG A 12 REMARK 465 SER A 13 REMARK 465 TRP A 14 REMARK 465 GLN A 15 REMARK 465 ILE A 16 REMARK 465 PRO A 17 REMARK 465 PHE A 18 REMARK 465 THR A 19 REMARK 465 ASN A 20 REMARK 465 SER A 21 REMARK 465 SER A 22 REMARK 465 ASP A 23 REMARK 465 GLN A 75 REMARK 465 PRO A 76 REMARK 465 ILE A 77 REMARK 465 TYR A 78 REMARK 465 GLY A 79 REMARK 465 VAL A 80 REMARK 465 THR A 81 REMARK 465 SER A 82 REMARK 465 GLY A 83 REMARK 465 PHE A 84 REMARK 465 GLY A 85 REMARK 465 GLY A 86 REMARK 465 MET A 87 REMARK 465 ALA A 88 REMARK 465 ASP A 89 REMARK 465 VAL A 90 REMARK 465 VAL A 91 REMARK 465 LEU A 298 REMARK 465 ASP A 299 REMARK 465 GLY A 300 REMARK 465 LYS A 301 REMARK 465 HIS A 302 REMARK 465 GLU A 303 REMARK 465 TYR A 304 REMARK 465 ARG A 305 REMARK 465 GLY A 306 REMARK 465 LYS A 307 REMARK 465 ASP A 308 REMARK 465 LEU A 309 REMARK 465 ILE A 310 REMARK 465 LYS A 567 REMARK 465 SER A 568 REMARK 465 THR A 569 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 46 152.00 -42.48 REMARK 500 THR A 51 155.54 -44.90 REMARK 500 ASP A 193 18.82 39.77 REMARK 500 LYS A 210 152.11 -40.84 REMARK 500 PRO A 215 -76.98 -21.66 REMARK 500 PRO A 273 50.74 -64.41 REMARK 500 GLN A 355 73.69 38.46 REMARK 500 GLU A 448 75.14 44.13 REMARK 500 GLN A 452 56.73 -104.38 REMARK 500 TRP A 531 -69.93 -103.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 475 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 RESIDUE MDO IS AUTOCATALYTICALLY FORMED REMARK 600 BY INTERNAL TRIPEPTIDE SEGMENT ALA167-SER168-GLY169 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1W27 RELATED DB: PDB REMARK 900 PHENYLALANINE AMMONIA-LYASE FROM PARSLEY REMARK 900 RELATED ID: 1Y2M RELATED DB: PDB REMARK 900 PHENYLALANINE AMMONIA-LYASE FROM YEAST REMARK 900 RELATED ID: 1T6J RELATED DB: PDB REMARK 900 PHENYLALANINE AMMONIA-LYASE FROM YEAST REMARK 900 RELATED ID: 1GKM RELATED DB: PDB REMARK 900 HISTIDINE AMMONIA-LYASE FROM PSEUDOMONAS PUTIDA REMARK 999 REMARK 999 SEQUENCE REMARK 999 NO SUITABLE DATABASE REFERENCES WERE REMARK 999 FOUND AT TIME OF PROCESSING DBREF 2NYF A 1 569 PDB 2NYF 2NYF 1 569 SEQRES 1 A 567 MET ASN ILE THR SER LEU GLN GLN ASN ILE THR ARG SER SEQRES 2 A 567 TRP GLN ILE PRO PHE THR ASN SER SER ASP SER ILE VAL SEQRES 3 A 567 THR VAL GLY ASP ARG ASN LEU THR ILE ASP GLU VAL VAL SEQRES 4 A 567 ASN VAL ALA ARG HIS GLY THR GLN VAL ARG LEU THR ASP SEQRES 5 A 567 ASN ALA ASP VAL ILE ARG GLY VAL GLN ALA SER CYS ASP SEQRES 6 A 567 TYR ILE ASN ASN ALA VAL GLU THR ALA GLN PRO ILE TYR SEQRES 7 A 567 GLY VAL THR SER GLY PHE GLY GLY MET ALA ASP VAL VAL SEQRES 8 A 567 ILE SER ARG GLU GLN ALA ALA GLU LEU GLN THR ASN LEU SEQRES 9 A 567 ILE TRP PHE LEU LYS SER GLY ALA GLY ASN LYS LEU SER SEQRES 10 A 567 LEU ALA ASP VAL ARG ALA ALA MET LEU LEU ARG ALA ASN SEQRES 11 A 567 SER HIS LEU TYR GLY ALA SER GLY ILE ARG LEU GLU LEU SEQRES 12 A 567 ILE GLN ARG ILE GLU THR PHE LEU ASN ALA GLY VAL THR SEQRES 13 A 567 PRO HIS VAL TYR GLU PHE GLY SER ILE GLY MDO ASP LEU SEQRES 14 A 567 VAL PRO LEU SER TYR ILE THR GLY ALA LEU ILE GLY LEU SEQRES 15 A 567 ASP PRO SER PHE THR VAL ASP PHE ASP GLY LYS GLU MET SEQRES 16 A 567 ASP ALA VAL THR ALA LEU SER ARG LEU GLY LEU PRO LYS SEQRES 17 A 567 LEU GLN LEU GLN PRO LYS GLU GLY LEU ALA MET MET ASN SEQRES 18 A 567 GLY THR SER VAL MET THR GLY ILE ALA ALA ASN CYS VAL SEQRES 19 A 567 TYR ASP ALA LYS VAL LEU LEU ALA LEU THR MET GLY VAL SEQRES 20 A 567 HIS ALA LEU ALA ILE GLN GLY LEU TYR GLY THR ASN GLN SEQRES 21 A 567 SER PHE HIS PRO PHE ILE HIS GLN CYS LYS PRO HIS PRO SEQRES 22 A 567 GLY GLN LEU TRP THR ALA ASP GLN MET PHE SER LEU LEU SEQRES 23 A 567 LYS ASP SER SER LEU VAL ARG GLU GLU LEU ASP GLY LYS SEQRES 24 A 567 HIS GLU TYR ARG GLY LYS ASP LEU ILE GLN ASP ARG TYR SEQRES 25 A 567 SER LEU ARG CYS LEU ALA GLN PHE ILE GLY PRO ILE VAL SEQRES 26 A 567 ASP GLY VAL SER GLU ILE THR LYS GLN ILE GLU VAL GLU SEQRES 27 A 567 MET ASN SER VAL THR ASP ASN PRO LEU ILE ASP VAL GLU SEQRES 28 A 567 ASN GLN VAL SER TYR HIS GLY GLY ASN PHE LEU GLY GLN SEQRES 29 A 567 TYR VAL GLY VAL THR MET ASP ARG LEU ARG TYR TYR ILE SEQRES 30 A 567 GLY LEU LEU ALA LYS HIS ILE ASP VAL GLN ILE ALA LEU SEQRES 31 A 567 LEU VAL SER PRO GLU PHE SER ASN GLY LEU PRO PRO SER SEQRES 32 A 567 LEU VAL GLY ASN SER ASP ARG LYS VAL ASN MET GLY LEU SEQRES 33 A 567 LYS GLY LEU GLN ILE SER GLY ASN SER ILE MET PRO LEU SEQRES 34 A 567 LEU SER PHE TYR GLY ASN SER LEU ALA ASP ARG PHE PRO SEQRES 35 A 567 THR HIS ALA GLU GLN PHE ASN GLN ASN ILE ASN SER GLN SEQRES 36 A 567 GLY TYR ILE SER ALA ASN LEU THR ARG ARG SER VAL ASP SEQRES 37 A 567 ILE PHE GLN ASN TYR MET ALA ILE ALA LEU MET PHE GLY SEQRES 38 A 567 VAL GLN ALA VAL ASP LEU ARG THR TYR LYS MET LYS GLY SEQRES 39 A 567 HIS TYR ASP ALA ARG THR CYS LEU SER PRO ASN THR VAL SEQRES 40 A 567 GLN LEU TYR THR ALA VAL CYS GLU VAL VAL GLY LYS PRO SEQRES 41 A 567 LEU THR SER VAL ARG PRO TYR ILE TRP ASN ASP ASN GLU SEQRES 42 A 567 GLN CYS LEU ASP GLU HIS ILE ALA ARG ILE SER ALA ASP SEQRES 43 A 567 ILE ALA GLY GLY GLY LEU ILE VAL GLN ALA VAL GLU HIS SEQRES 44 A 567 ILE PHE SER SER LEU LYS SER THR MODRES 2NYF MDO A 167 ALA MODRES 2NYF MDO A 167 SER MODRES 2NYF MDO A 167 GLY HET MDO A 167 13 HETNAM MDO {2-[(1S)-1-AMINOETHYL]-4-METHYLIDENE-5-OXO-4,5-DIHYDRO- HETNAM 2 MDO 1H-IMIDAZOL-1-YL}ACETIC ACID HETSYN MDO 4-METHYLIDENE-5-ONE; PEPTIDE DERIVED CHROMOPHORE FORMUL 1 MDO C8 H11 N3 O3 FORMUL 2 HOH *31(H2 O) HELIX 1 1 THR A 34 HIS A 44 1 11 HELIX 2 2 ASN A 53 ALA A 74 1 22 HELIX 3 3 SER A 93 LEU A 108 1 16 HELIX 4 4 SER A 117 LEU A 133 1 17 HELIX 5 5 ARG A 140 GLY A 154 1 15 HELIX 6 6 ASP A 170 ILE A 182 1 13 HELIX 7 7 ALA A 199 LEU A 206 1 8 HELIX 8 8 LYS A 216 ASN A 223 1 8 HELIX 9 9 THR A 225 LEU A 257 1 33 HELIX 10 10 ASN A 261 PHE A 264 5 4 HELIX 11 11 HIS A 265 GLN A 270 1 6 HELIX 12 12 HIS A 274 LEU A 288 1 15 HELIX 13 13 ARG A 313 CYS A 318 1 6 HELIX 14 14 CYS A 318 ASN A 342 1 25 HELIX 15 15 VAL A 352 GLN A 355 5 4 HELIX 16 16 GLY A 365 SER A 395 1 31 HELIX 17 17 PRO A 403 VAL A 407 5 5 HELIX 18 18 LEU A 418 GLY A 436 1 19 HELIX 19 19 LEU A 439 PHE A 443 5 5 HELIX 20 20 GLN A 457 GLY A 496 1 40 HELIX 21 21 ASP A 499 CYS A 503 5 5 HELIX 22 22 SER A 505 GLY A 520 1 16 HELIX 23 23 ASN A 532 GLN A 536 5 5 HELIX 24 24 CYS A 537 GLY A 552 1 16 HELIX 25 25 GLY A 553 ALA A 558 1 6 HELIX 26 26 VAL A 559 SER A 564 1 6 SHEET 1 A 2 ILE A 25 VAL A 28 0 SHEET 2 A 2 GLN A 47 LEU A 50 1 O GLN A 47 N VAL A 26 SHEET 1 B 2 ALA A 112 LYS A 115 0 SHEET 2 B 2 TYR A 160 PHE A 162 -1 O GLU A 161 N ASN A 114 SHEET 1 C 3 VAL A 155 PRO A 157 0 SHEET 2 C 3 THR A 189 PHE A 192 -1 O ASP A 191 N THR A 156 SHEET 3 C 3 LYS A 195 ASP A 198 -1 O MET A 197 N VAL A 190 SHEET 1 D 2 LEU A 349 ASP A 351 0 SHEET 2 D 2 VAL A 356 TYR A 358 -1 O VAL A 356 N ASP A 351 LINK C GLY A 166 N1 MDO A 167 1555 1555 1.33 LINK C3 MDO A 167 N ASP A 170 1555 1555 1.34 CISPEP 1 ASN A 347 PRO A 348 0 9.13 CRYST1 74.279 91.486 151.098 90.00 90.00 90.00 I 2 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013463 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010931 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006618 0.00000 CONECT 960 962 CONECT 962 960 963 CONECT 963 962 964 965 CONECT 964 963 966 971 CONECT 965 963 CONECT 966 964 967 CONECT 967 966 968 970 CONECT 968 967 969 971 CONECT 969 968 CONECT 970 967 CONECT 971 964 968 972 CONECT 972 971 973 CONECT 973 972 974 975 CONECT 974 973 CONECT 975 973 MASTER 374 0 1 26 9 0 0 6 3967 1 15 44 END