data_2NYH # _entry.id 2NYH # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.365 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2NYH pdb_00002nyh 10.2210/pdb2nyh/pdb RCSB RCSB040459 ? ? WWPDB D_1000040459 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id 367834 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.SG_entry Y _pdbx_database_status.entry_id 2NYH _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2006-11-20 _pdbx_database_status.status_code REL _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # _audit_author.name 'Joint Center for Structural Genomics (JCSG)' _audit_author.pdbx_ordinal 1 # _citation.id primary _citation.title 'Crystal structure of putative Dioxygenase (YP_555069.1) from Burkholderia Xenovorans LB400 at 1.70 A resolution' _citation.journal_abbrev 'To be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # _citation_author.citation_id primary _citation_author.name 'Joint Center for Structural Genomics (JCSG)' _citation_author.ordinal 1 _citation_author.identifier_ORCID ? # _cell.entry_id 2NYH _cell.length_a 70.970 _cell.length_b 88.304 _cell.length_c 88.571 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 90.000 _cell.pdbx_unique_axis ? _cell.Z_PDB 16 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2NYH _symmetry.Int_Tables_number 20 _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Putative dioxygenase' 13423.615 2 ? ? ? ? 2 non-polymer syn 'SULFATE ION' 96.063 5 ? ? ? ? 3 water nat water 18.015 363 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;G(MSE)TFRDTSAIASWHAHVYFDASSRDAAWTLREQIEAHWSGKLQLGRFHERPVGPHP(MSE)WSYQLAFTQEQFADL VGWLTLNHGALDIFLHPNTGDALRDHRDAAVWIGHSHELVLSALN ; _entity_poly.pdbx_seq_one_letter_code_can ;GMTFRDTSAIASWHAHVYFDASSRDAAWTLREQIEAHWSGKLQLGRFHERPVGPHPMWSYQLAFTQEQFADLVGWLTLNH GALDIFLHPNTGDALRDHRDAAVWIGHSHELVLSALN ; _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier 367834 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 MSE n 1 3 THR n 1 4 PHE n 1 5 ARG n 1 6 ASP n 1 7 THR n 1 8 SER n 1 9 ALA n 1 10 ILE n 1 11 ALA n 1 12 SER n 1 13 TRP n 1 14 HIS n 1 15 ALA n 1 16 HIS n 1 17 VAL n 1 18 TYR n 1 19 PHE n 1 20 ASP n 1 21 ALA n 1 22 SER n 1 23 SER n 1 24 ARG n 1 25 ASP n 1 26 ALA n 1 27 ALA n 1 28 TRP n 1 29 THR n 1 30 LEU n 1 31 ARG n 1 32 GLU n 1 33 GLN n 1 34 ILE n 1 35 GLU n 1 36 ALA n 1 37 HIS n 1 38 TRP n 1 39 SER n 1 40 GLY n 1 41 LYS n 1 42 LEU n 1 43 GLN n 1 44 LEU n 1 45 GLY n 1 46 ARG n 1 47 PHE n 1 48 HIS n 1 49 GLU n 1 50 ARG n 1 51 PRO n 1 52 VAL n 1 53 GLY n 1 54 PRO n 1 55 HIS n 1 56 PRO n 1 57 MSE n 1 58 TRP n 1 59 SER n 1 60 TYR n 1 61 GLN n 1 62 LEU n 1 63 ALA n 1 64 PHE n 1 65 THR n 1 66 GLN n 1 67 GLU n 1 68 GLN n 1 69 PHE n 1 70 ALA n 1 71 ASP n 1 72 LEU n 1 73 VAL n 1 74 GLY n 1 75 TRP n 1 76 LEU n 1 77 THR n 1 78 LEU n 1 79 ASN n 1 80 HIS n 1 81 GLY n 1 82 ALA n 1 83 LEU n 1 84 ASP n 1 85 ILE n 1 86 PHE n 1 87 LEU n 1 88 HIS n 1 89 PRO n 1 90 ASN n 1 91 THR n 1 92 GLY n 1 93 ASP n 1 94 ALA n 1 95 LEU n 1 96 ARG n 1 97 ASP n 1 98 HIS n 1 99 ARG n 1 100 ASP n 1 101 ALA n 1 102 ALA n 1 103 VAL n 1 104 TRP n 1 105 ILE n 1 106 GLY n 1 107 HIS n 1 108 SER n 1 109 HIS n 1 110 GLU n 1 111 LEU n 1 112 VAL n 1 113 LEU n 1 114 SER n 1 115 ALA n 1 116 LEU n 1 117 ASN n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Burkholderia _entity_src_gen.pdbx_gene_src_gene YP_555069.1 _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Burkholderia xenovorans' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 36873 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type Plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code Q13JM0_BURXL _struct_ref.pdbx_db_accession Q13JM0 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2NYH A 2 ? 117 ? Q13JM0 1 ? 116 ? 1 116 2 1 2NYH B 2 ? 117 ? Q13JM0 1 ? 116 ? 1 116 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2NYH GLY A 1 ? UNP Q13JM0 ? ? 'expression tag' 0 1 1 2NYH MSE A 2 ? UNP Q13JM0 MET 1 'modified residue' 1 2 1 2NYH MSE A 57 ? UNP Q13JM0 MET 56 'expression tag' 56 3 2 2NYH GLY B 1 ? UNP Q13JM0 ? ? 'expression tag' 0 4 2 2NYH MSE B 2 ? UNP Q13JM0 MET 1 'modified residue' 1 5 2 2NYH MSE B 57 ? UNP Q13JM0 MET 56 'modified residue' 56 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.method 'X-RAY DIFFRACTION' _exptl.entry_id 2NYH # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 2.58 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 52.39 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.pH 6.4 _exptl_crystal_grow.temp 277 _exptl_crystal_grow.pdbx_details '0.2M Li2SO4, 20.0% PEG-3350, No Buffer, pH 6.4, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K' _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.details ? _diffrn_detector.pdbx_collection_date 2006-09-13 # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double Crystal Si(111)' _diffrn_radiation.pdbx_diffrn_protocol MAD _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.0000 1.0 2 0.9795 1.0 3 0.9792 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_wavelength_list '1.0000, 0.9795, 0.9792' _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site ALS # _reflns.entry_id 2NYH _reflns.d_resolution_high 1.700 _reflns.d_resolution_low 27.692 _reflns.number_obs 30205 _reflns.pdbx_Rmerge_I_obs 0.128 _reflns.pdbx_netI_over_sigmaI 8.300 _reflns.pdbx_Rsym_value 0.128 _reflns.pdbx_redundancy 3.400 _reflns.percent_possible_obs 98.000 _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.number_all ? _reflns.B_iso_Wilson_estimate 14.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # loop_ _reflns_shell.d_res_high _reflns_shell.d_res_low _reflns_shell.number_measured_obs _reflns_shell.number_measured_all _reflns_shell.number_unique_obs _reflns_shell.Rmerge_I_obs _reflns_shell.meanI_over_sigI_obs _reflns_shell.pdbx_Rsym_value _reflns_shell.pdbx_chi_squared _reflns_shell.pdbx_redundancy _reflns_shell.percent_possible_obs _reflns_shell.number_unique_all _reflns_shell.percent_possible_all _reflns_shell.pdbx_diffrn_id _reflns_shell.pdbx_ordinal 1.70 1.74 ? 7583 ? 0.916 1.70 0.916 ? 3.50 ? 2176 97.40 ? 1 1.74 1.79 ? 7555 ? 0.741 1.0 0.741 ? 3.50 ? 2162 97.50 ? 2 1.79 1.84 ? 7303 ? 0.608 1.3 0.608 ? 3.50 ? 2098 97.30 ? 3 1.84 1.90 ? 7021 ? 0.452 1.7 0.452 ? 3.50 ? 2020 97.80 ? 4 1.90 1.96 ? 6840 ? 0.361 2.1 0.361 ? 3.50 ? 1970 97.70 ? 5 1.96 2.03 ? 6661 ? 0.298 2.6 0.298 ? 3.50 ? 1919 98.20 ? 6 2.03 2.11 ? 6390 ? 0.224 3.4 0.224 ? 3.50 ? 1843 97.40 ? 7 2.11 2.19 ? 6093 ? 0.2 3.9 0.2 ? 3.50 ? 1763 98.40 ? 8 2.19 2.29 ? 5906 ? 0.167 4.6 0.167 ? 3.40 ? 1716 98.00 ? 9 2.29 2.40 ? 5649 ? 0.146 5.1 0.146 ? 3.40 ? 1643 98.20 ? 10 2.40 2.53 ? 5313 ? 0.125 6.0 0.125 ? 3.40 ? 1553 98.00 ? 11 2.53 2.69 ? 5120 ? 0.106 7.0 0.106 ? 3.40 ? 1498 98.50 ? 12 2.69 2.87 ? 4688 ? 0.096 7.5 0.096 ? 3.40 ? 1388 98.60 ? 13 2.87 3.10 ? 4396 ? 0.078 8.9 0.078 ? 3.30 ? 1313 98.30 ? 14 3.10 3.40 ? 4011 ? 0.066 9.0 0.066 ? 3.30 ? 1216 98.50 ? 15 3.40 3.80 ? 3582 ? 0.06 9.5 0.06 ? 3.20 ? 1109 99.00 ? 16 3.80 4.39 ? 2991 ? 0.047 12.5 0.047 ? 3.10 ? 957 97.50 ? 17 4.39 5.38 ? 2722 ? 0.037 16.0 0.037 ? 3.30 ? 826 98.80 ? 18 5.38 7.60 ? 2252 ? 0.031 21.8 0.031 ? 3.40 ? 665 98.80 ? 19 7.60 27.69 ? 1192 ? 0.021 31.1 0.021 ? 3.20 ? 370 96.20 ? 20 # _refine.entry_id 2NYH _refine.ls_d_res_high 1.700 _refine.ls_d_res_low 27.692 _refine.pdbx_ls_sigma_F 0.00 _refine.ls_percent_reflns_obs 97.490 _refine.ls_number_reflns_obs 30193 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details ;1. HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS 2. A MET-INHIBITION PROTOCOL WAS USED FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET INCORPORATION. 3. SULFATES MODELED BASED ON CRYSTALLIZATION CONDITIONS. 4. DIFFERENCE ELECTRON DENSITY COINCIDENT WITH AN ANOMALOUS DIFFERENCE DENSITY PEAK IS LOCATED NEAR THE SIDE CHAIN OF HIS A47. X-RAY FLOURESCENCE EXPERIMENTS WERE UNSUCCESSFUL IN IDENTIFYING THE SCATTERING ELEMENT. THIS DENSITY WAS LEFT UNMODELED. ; _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.176 _refine.ls_R_factor_R_free 0.22 _refine.ls_percent_reflns_R_free 5.100 _refine.ls_number_reflns_R_free 1538 _refine.B_iso_mean 11.044 _refine.aniso_B[1][1] -0.710 _refine.aniso_B[2][2] 1.580 _refine.aniso_B[3][3] -0.870 _refine.aniso_B[1][2] 0.000 _refine.aniso_B[1][3] 0.000 _refine.aniso_B[2][3] 0.000 _refine.correlation_coeff_Fo_to_Fc 0.956 _refine.correlation_coeff_Fo_to_Fc_free 0.929 _refine.pdbx_overall_ESU_R 0.105 _refine.pdbx_overall_ESU_R_Free 0.108 _refine.overall_SU_ML 0.079 _refine.overall_SU_B 2.442 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.200 _refine.pdbx_solvent_ion_probe_radii 0.800 _refine.pdbx_solvent_shrinkage_radii 0.800 _refine.pdbx_method_to_determine_struct MAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD WITH PHASES' _refine.pdbx_ls_sigma_I ? _refine.ls_number_reflns_all ? _refine.ls_R_factor_obs 0.179 _refine.ls_redundancy_reflns_obs ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_starting_model ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.occupancy_max ? _refine.occupancy_min ? _refine.pdbx_isotropic_thermal_model ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1884 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 25 _refine_hist.number_atoms_solvent 363 _refine_hist.number_atoms_total 2272 _refine_hist.d_res_high 1.700 _refine_hist.d_res_low 27.692 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 1973 0.016 0.021 ? 'X-RAY DIFFRACTION' ? r_bond_other_d 1271 0.002 0.020 ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2700 1.466 1.898 ? 'X-RAY DIFFRACTION' ? r_angle_other_deg 3052 0.967 3.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 235 6.428 5.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 102 37.653 22.549 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 281 11.599 15.000 ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 14 13.110 15.000 ? 'X-RAY DIFFRACTION' ? r_chiral_restr 278 0.088 0.200 ? 'X-RAY DIFFRACTION' ? r_gen_planes_refined 2218 0.007 0.020 ? 'X-RAY DIFFRACTION' ? r_gen_planes_other 456 0.001 0.020 ? 'X-RAY DIFFRACTION' ? r_nbd_refined 353 0.194 0.200 ? 'X-RAY DIFFRACTION' ? r_nbd_other 1349 0.204 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 898 0.178 0.200 ? 'X-RAY DIFFRACTION' ? r_nbtor_other 929 0.089 0.200 ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 246 0.157 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 9 0.169 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other 44 0.281 0.200 ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 26 0.192 0.200 ? 'X-RAY DIFFRACTION' ? r_mcbond_it 1392 2.119 3.000 ? 'X-RAY DIFFRACTION' ? r_mcbond_other 470 0.562 3.000 ? 'X-RAY DIFFRACTION' ? r_mcangle_it 1842 2.702 5.000 ? 'X-RAY DIFFRACTION' ? r_scbond_it 958 4.395 8.000 ? 'X-RAY DIFFRACTION' ? r_scangle_it 855 6.240 11.000 ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.d_res_high 1.700 _refine_ls_shell.d_res_low 1.744 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 96.700 _refine_ls_shell.number_reflns_R_work 2047 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.265 _refine_ls_shell.R_factor_R_free 0.36 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 119 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs 2166 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2NYH _struct.title 'Crystal structure of putative dioxygenase (YP_555069.1) from Burkholderia Xenovorans LB400 at 1.70 A resolution' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.text ;YP_555069.1, putative Dioxygenase, Structural Genomics, PSI-2, Protein Structure Initiative, Joint Center for Structural Genomics, JCSG, OXIDOREDUCTASE ; _struct_keywords.pdbx_keywords OXIDOREDUCTASE _struct_keywords.entry_id 2NYH # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? I N N 3 ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 6 ? ILE A 10 ? ASP A 5 ILE A 9 5 ? 5 HELX_P HELX_P2 2 ASP A 20 ? SER A 22 ? ASP A 19 SER A 21 5 ? 3 HELX_P HELX_P3 3 SER A 23 ? TRP A 38 ? SER A 22 TRP A 37 1 ? 16 HELX_P HELX_P4 4 THR A 65 ? GLU A 67 ? THR A 64 GLU A 66 5 ? 3 HELX_P HELX_P5 5 GLN A 68 ? HIS A 80 ? GLN A 67 HIS A 79 1 ? 13 HELX_P HELX_P6 6 ASP A 93 ? ASP A 100 ? ASP A 92 ASP A 99 1 ? 8 HELX_P HELX_P7 7 VAL A 112 ? LEU A 116 ? VAL A 111 LEU A 115 5 ? 5 HELX_P HELX_P8 8 ASP B 6 ? ILE B 10 ? ASP B 5 ILE B 9 5 ? 5 HELX_P HELX_P9 9 ASP B 20 ? SER B 22 ? ASP B 19 SER B 21 5 ? 3 HELX_P HELX_P10 10 SER B 23 ? TRP B 38 ? SER B 22 TRP B 37 1 ? 16 HELX_P HELX_P11 11 THR B 65 ? GLU B 67 ? THR B 64 GLU B 66 5 ? 3 HELX_P HELX_P12 12 GLN B 68 ? HIS B 80 ? GLN B 67 HIS B 79 1 ? 13 HELX_P HELX_P13 13 ASP B 93 ? ALA B 101 ? ASP B 92 ALA B 100 1 ? 9 HELX_P HELX_P14 14 VAL B 112 ? LEU B 116 ? VAL B 111 LEU B 115 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A GLY 1 C ? ? ? 1_555 A MSE 2 N ? ? A GLY 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.319 ? ? covale2 covale both ? A MSE 2 C ? ? ? 1_555 A THR 3 N ? ? A MSE 1 A THR 2 1_555 ? ? ? ? ? ? ? 1.340 ? ? covale3 covale both ? A PRO 56 C ? ? ? 1_555 A MSE 57 N ? ? A PRO 55 A MSE 56 1_555 ? ? ? ? ? ? ? 1.335 ? ? covale4 covale both ? A MSE 57 C ? ? ? 1_555 A TRP 58 N ? ? A MSE 56 A TRP 57 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale5 covale both ? B MSE 2 C ? ? ? 1_555 B THR 3 N ? ? B MSE 1 B THR 2 1_555 ? ? ? ? ? ? ? 1.325 ? ? covale6 covale both ? B PRO 56 C ? ? ? 1_555 B MSE 57 N ? ? B PRO 55 B MSE 56 1_555 ? ? ? ? ? ? ? 1.337 ? ? covale7 covale both ? B MSE 57 C ? ? ? 1_555 B TRP 58 N ? ? B MSE 56 B TRP 57 1_555 ? ? ? ? ? ? ? 1.340 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 10 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 43 ? LEU A 44 ? GLN A 42 LEU A 43 A 2 TRP A 58 ? PHE A 64 ? TRP A 57 PHE A 63 A 3 SER A 12 ? PHE A 19 ? SER A 11 PHE A 18 A 4 ILE A 85 ? ASN A 90 ? ILE A 84 ASN A 89 A 5 VAL A 103 ? ILE A 105 ? VAL A 102 ILE A 104 A 6 VAL B 103 ? ILE B 105 ? VAL B 102 ILE B 104 A 7 ILE B 85 ? ASN B 90 ? ILE B 84 ASN B 89 A 8 SER B 12 ? PHE B 19 ? SER B 11 PHE B 18 A 9 TRP B 58 ? PHE B 64 ? TRP B 57 PHE B 63 A 10 GLN B 43 ? LEU B 44 ? GLN B 42 LEU B 43 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 43 ? N GLN A 42 O ALA A 63 ? O ALA A 62 A 2 3 O PHE A 64 ? O PHE A 63 N TRP A 13 ? N TRP A 12 A 3 4 N HIS A 16 ? N HIS A 15 O PHE A 86 ? O PHE A 85 A 4 5 N LEU A 87 ? N LEU A 86 O VAL A 103 ? O VAL A 102 A 5 6 N TRP A 104 ? N TRP A 103 O TRP B 104 ? O TRP B 103 A 6 7 O VAL B 103 ? O VAL B 102 N LEU B 87 ? N LEU B 86 A 7 8 O ASN B 90 ? O ASN B 89 N SER B 12 ? N SER B 11 A 8 9 N TRP B 13 ? N TRP B 12 O PHE B 64 ? O PHE B 63 A 9 10 O ALA B 63 ? O ALA B 62 N GLN B 43 ? N GLN B 42 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SO4 117 ? 8 'BINDING SITE FOR RESIDUE SO4 B 117' AC2 Software A SO4 117 ? 7 'BINDING SITE FOR RESIDUE SO4 A 117' AC3 Software A SO4 118 ? 7 'BINDING SITE FOR RESIDUE SO4 A 118' AC4 Software B SO4 118 ? 8 'BINDING SITE FOR RESIDUE SO4 B 118' AC5 Software A SO4 119 ? 7 'BINDING SITE FOR RESIDUE SO4 A 119' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 8 LYS A 41 ? LYS A 40 . ? 6_554 ? 2 AC1 8 HOH H . ? HOH A 146 . ? 6_554 ? 3 AC1 8 ARG B 46 ? ARG B 45 . ? 1_555 ? 4 AC1 8 HIS B 48 ? HIS B 47 . ? 1_555 ? 5 AC1 8 ARG B 50 ? ARG B 49 . ? 1_555 ? 6 AC1 8 HOH I . ? HOH B 133 . ? 1_555 ? 7 AC1 8 HOH I . ? HOH B 192 . ? 3_554 ? 8 AC1 8 HOH I . ? HOH B 303 . ? 1_555 ? 9 AC2 7 ARG A 46 ? ARG A 45 . ? 3_555 ? 10 AC2 7 VAL A 112 ? VAL A 111 . ? 1_555 ? 11 AC2 7 LEU A 113 ? LEU A 112 . ? 1_555 ? 12 AC2 7 SER A 114 ? SER A 113 . ? 1_555 ? 13 AC2 7 HOH H . ? HOH A 197 . ? 1_555 ? 14 AC2 7 HOH H . ? HOH A 260 . ? 1_555 ? 15 AC2 7 HOH H . ? HOH A 268 . ? 3_555 ? 16 AC3 7 ARG A 46 ? ARG A 45 . ? 1_555 ? 17 AC3 7 HIS A 48 ? HIS A 47 . ? 1_555 ? 18 AC3 7 GLU A 49 ? GLU A 48 . ? 1_555 ? 19 AC3 7 ARG A 50 ? ARG A 49 . ? 1_555 ? 20 AC3 7 HOH H . ? HOH A 140 . ? 1_555 ? 21 AC3 7 HOH H . ? HOH A 268 . ? 1_555 ? 22 AC3 7 LYS B 41 ? LYS B 40 . ? 6_555 ? 23 AC4 8 GLY B 45 ? GLY B 44 . ? 1_555 ? 24 AC4 8 ARG B 46 ? ARG B 45 . ? 1_555 ? 25 AC4 8 HIS B 48 ? HIS B 47 . ? 1_555 ? 26 AC4 8 HOH I . ? HOH B 120 . ? 1_555 ? 27 AC4 8 HOH I . ? HOH B 146 . ? 1_555 ? 28 AC4 8 HOH I . ? HOH B 206 . ? 1_555 ? 29 AC4 8 HOH I . ? HOH B 299 . ? 1_555 ? 30 AC4 8 HOH I . ? HOH B 307 . ? 1_555 ? 31 AC5 7 GLY A 1 ? GLY A 0 . ? 8_555 ? 32 AC5 7 GLN A 33 ? GLN A 32 . ? 1_555 ? 33 AC5 7 HIS A 37 ? HIS A 36 . ? 1_555 ? 34 AC5 7 TRP A 75 ? TRP A 74 . ? 1_555 ? 35 AC5 7 HOH H . ? HOH A 287 . ? 1_555 ? 36 AC5 7 HOH I . ? HOH B 164 . ? 8_555 ? 37 AC5 7 HOH I . ? HOH B 253 . ? 8_555 ? # _database_PDB_matrix.entry_id 2NYH _database_PDB_matrix.origx[1][1] 1.00000 _database_PDB_matrix.origx[1][2] 0.00000 _database_PDB_matrix.origx[1][3] 0.00000 _database_PDB_matrix.origx[2][1] 0.00000 _database_PDB_matrix.origx[2][2] 1.00000 _database_PDB_matrix.origx[2][3] 0.00000 _database_PDB_matrix.origx[3][1] 0.00000 _database_PDB_matrix.origx[3][2] 0.00000 _database_PDB_matrix.origx[3][3] 1.00000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2NYH _atom_sites.fract_transf_matrix[1][1] 0.01409 _atom_sites.fract_transf_matrix[1][2] 0.00000 _atom_sites.fract_transf_matrix[1][3] 0.00000 _atom_sites.fract_transf_matrix[2][1] 0.00000 _atom_sites.fract_transf_matrix[2][2] 0.01132 _atom_sites.fract_transf_matrix[2][3] 0.00000 _atom_sites.fract_transf_matrix[3][1] 0.00000 _atom_sites.fract_transf_matrix[3][2] 0.00000 _atom_sites.fract_transf_matrix[3][3] 0.01129 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 0 0 GLY GLY A . n A 1 2 MSE 2 1 1 MSE MSE A . n A 1 3 THR 3 2 2 THR THR A . n A 1 4 PHE 4 3 3 PHE PHE A . n A 1 5 ARG 5 4 4 ARG ARG A . n A 1 6 ASP 6 5 5 ASP ASP A . n A 1 7 THR 7 6 6 THR THR A . n A 1 8 SER 8 7 7 SER SER A . n A 1 9 ALA 9 8 8 ALA ALA A . n A 1 10 ILE 10 9 9 ILE ILE A . n A 1 11 ALA 11 10 10 ALA ALA A . n A 1 12 SER 12 11 11 SER SER A . n A 1 13 TRP 13 12 12 TRP TRP A . n A 1 14 HIS 14 13 13 HIS HIS A . n A 1 15 ALA 15 14 14 ALA ALA A . n A 1 16 HIS 16 15 15 HIS HIS A . n A 1 17 VAL 17 16 16 VAL VAL A . n A 1 18 TYR 18 17 17 TYR TYR A . n A 1 19 PHE 19 18 18 PHE PHE A . n A 1 20 ASP 20 19 19 ASP ASP A . n A 1 21 ALA 21 20 20 ALA ALA A . n A 1 22 SER 22 21 21 SER SER A . n A 1 23 SER 23 22 22 SER SER A . n A 1 24 ARG 24 23 23 ARG ARG A . n A 1 25 ASP 25 24 24 ASP ASP A . n A 1 26 ALA 26 25 25 ALA ALA A . n A 1 27 ALA 27 26 26 ALA ALA A . n A 1 28 TRP 28 27 27 TRP TRP A . n A 1 29 THR 29 28 28 THR THR A . n A 1 30 LEU 30 29 29 LEU LEU A . n A 1 31 ARG 31 30 30 ARG ARG A . n A 1 32 GLU 32 31 31 GLU GLU A . n A 1 33 GLN 33 32 32 GLN GLN A . n A 1 34 ILE 34 33 33 ILE ILE A . n A 1 35 GLU 35 34 34 GLU GLU A . n A 1 36 ALA 36 35 35 ALA ALA A . n A 1 37 HIS 37 36 36 HIS HIS A . n A 1 38 TRP 38 37 37 TRP TRP A . n A 1 39 SER 39 38 38 SER SER A . n A 1 40 GLY 40 39 39 GLY GLY A . n A 1 41 LYS 41 40 40 LYS LYS A . n A 1 42 LEU 42 41 41 LEU LEU A . n A 1 43 GLN 43 42 42 GLN GLN A . n A 1 44 LEU 44 43 43 LEU LEU A . n A 1 45 GLY 45 44 44 GLY GLY A . n A 1 46 ARG 46 45 45 ARG ARG A . n A 1 47 PHE 47 46 46 PHE PHE A . n A 1 48 HIS 48 47 47 HIS HIS A . n A 1 49 GLU 49 48 48 GLU GLU A . n A 1 50 ARG 50 49 49 ARG ARG A . n A 1 51 PRO 51 50 50 PRO PRO A . n A 1 52 VAL 52 51 51 VAL VAL A . n A 1 53 GLY 53 52 52 GLY GLY A . n A 1 54 PRO 54 53 53 PRO PRO A . n A 1 55 HIS 55 54 54 HIS HIS A . n A 1 56 PRO 56 55 55 PRO PRO A . n A 1 57 MSE 57 56 56 MSE MSE A . n A 1 58 TRP 58 57 57 TRP TRP A . n A 1 59 SER 59 58 58 SER SER A . n A 1 60 TYR 60 59 59 TYR TYR A . n A 1 61 GLN 61 60 60 GLN GLN A . n A 1 62 LEU 62 61 61 LEU LEU A . n A 1 63 ALA 63 62 62 ALA ALA A . n A 1 64 PHE 64 63 63 PHE PHE A . n A 1 65 THR 65 64 64 THR THR A . n A 1 66 GLN 66 65 65 GLN GLN A . n A 1 67 GLU 67 66 66 GLU GLU A . n A 1 68 GLN 68 67 67 GLN GLN A . n A 1 69 PHE 69 68 68 PHE PHE A . n A 1 70 ALA 70 69 69 ALA ALA A . n A 1 71 ASP 71 70 70 ASP ASP A . n A 1 72 LEU 72 71 71 LEU LEU A . n A 1 73 VAL 73 72 72 VAL VAL A . n A 1 74 GLY 74 73 73 GLY GLY A . n A 1 75 TRP 75 74 74 TRP TRP A . n A 1 76 LEU 76 75 75 LEU LEU A . n A 1 77 THR 77 76 76 THR THR A . n A 1 78 LEU 78 77 77 LEU LEU A . n A 1 79 ASN 79 78 78 ASN ASN A . n A 1 80 HIS 80 79 79 HIS HIS A . n A 1 81 GLY 81 80 80 GLY GLY A . n A 1 82 ALA 82 81 81 ALA ALA A . n A 1 83 LEU 83 82 82 LEU LEU A . n A 1 84 ASP 84 83 83 ASP ASP A . n A 1 85 ILE 85 84 84 ILE ILE A . n A 1 86 PHE 86 85 85 PHE PHE A . n A 1 87 LEU 87 86 86 LEU LEU A . n A 1 88 HIS 88 87 87 HIS HIS A . n A 1 89 PRO 89 88 88 PRO PRO A . n A 1 90 ASN 90 89 89 ASN ASN A . n A 1 91 THR 91 90 90 THR THR A . n A 1 92 GLY 92 91 91 GLY GLY A . n A 1 93 ASP 93 92 92 ASP ASP A . n A 1 94 ALA 94 93 93 ALA ALA A . n A 1 95 LEU 95 94 94 LEU LEU A . n A 1 96 ARG 96 95 95 ARG ARG A . n A 1 97 ASP 97 96 96 ASP ASP A . n A 1 98 HIS 98 97 97 HIS HIS A . n A 1 99 ARG 99 98 98 ARG ARG A . n A 1 100 ASP 100 99 99 ASP ASP A . n A 1 101 ALA 101 100 100 ALA ALA A . n A 1 102 ALA 102 101 101 ALA ALA A . n A 1 103 VAL 103 102 102 VAL VAL A . n A 1 104 TRP 104 103 103 TRP TRP A . n A 1 105 ILE 105 104 104 ILE ILE A . n A 1 106 GLY 106 105 105 GLY GLY A . n A 1 107 HIS 107 106 106 HIS HIS A . n A 1 108 SER 108 107 107 SER SER A . n A 1 109 HIS 109 108 108 HIS HIS A . n A 1 110 GLU 110 109 109 GLU GLU A . n A 1 111 LEU 111 110 110 LEU LEU A . n A 1 112 VAL 112 111 111 VAL VAL A . n A 1 113 LEU 113 112 112 LEU LEU A . n A 1 114 SER 114 113 113 SER SER A . n A 1 115 ALA 115 114 114 ALA ALA A . n A 1 116 LEU 116 115 115 LEU LEU A . n A 1 117 ASN 117 116 ? ? ? A . n B 1 1 GLY 1 0 ? ? ? B . n B 1 2 MSE 2 1 1 MSE MSE B . n B 1 3 THR 3 2 2 THR THR B . n B 1 4 PHE 4 3 3 PHE PHE B . n B 1 5 ARG 5 4 4 ARG ARG B . n B 1 6 ASP 6 5 5 ASP ASP B . n B 1 7 THR 7 6 6 THR THR B . n B 1 8 SER 8 7 7 SER SER B . n B 1 9 ALA 9 8 8 ALA ALA B . n B 1 10 ILE 10 9 9 ILE ILE B . n B 1 11 ALA 11 10 10 ALA ALA B . n B 1 12 SER 12 11 11 SER SER B . n B 1 13 TRP 13 12 12 TRP TRP B . n B 1 14 HIS 14 13 13 HIS HIS B . n B 1 15 ALA 15 14 14 ALA ALA B . n B 1 16 HIS 16 15 15 HIS HIS B . n B 1 17 VAL 17 16 16 VAL VAL B . n B 1 18 TYR 18 17 17 TYR TYR B . n B 1 19 PHE 19 18 18 PHE PHE B . n B 1 20 ASP 20 19 19 ASP ASP B . n B 1 21 ALA 21 20 20 ALA ALA B . n B 1 22 SER 22 21 21 SER SER B . n B 1 23 SER 23 22 22 SER SER B . n B 1 24 ARG 24 23 23 ARG ARG B . n B 1 25 ASP 25 24 24 ASP ASP B . n B 1 26 ALA 26 25 25 ALA ALA B . n B 1 27 ALA 27 26 26 ALA ALA B . n B 1 28 TRP 28 27 27 TRP TRP B . n B 1 29 THR 29 28 28 THR THR B . n B 1 30 LEU 30 29 29 LEU LEU B . n B 1 31 ARG 31 30 30 ARG ARG B . n B 1 32 GLU 32 31 31 GLU GLU B . n B 1 33 GLN 33 32 32 GLN GLN B . n B 1 34 ILE 34 33 33 ILE ILE B . n B 1 35 GLU 35 34 34 GLU GLU B . n B 1 36 ALA 36 35 35 ALA ALA B . n B 1 37 HIS 37 36 36 HIS HIS B . n B 1 38 TRP 38 37 37 TRP TRP B . n B 1 39 SER 39 38 38 SER SER B . n B 1 40 GLY 40 39 39 GLY GLY B . n B 1 41 LYS 41 40 40 LYS LYS B . n B 1 42 LEU 42 41 41 LEU LEU B . n B 1 43 GLN 43 42 42 GLN GLN B . n B 1 44 LEU 44 43 43 LEU LEU B . n B 1 45 GLY 45 44 44 GLY GLY B . n B 1 46 ARG 46 45 45 ARG ARG B . n B 1 47 PHE 47 46 46 PHE PHE B . n B 1 48 HIS 48 47 47 HIS HIS B . n B 1 49 GLU 49 48 48 GLU GLU B . n B 1 50 ARG 50 49 49 ARG ARG B . n B 1 51 PRO 51 50 50 PRO PRO B . n B 1 52 VAL 52 51 51 VAL VAL B . n B 1 53 GLY 53 52 52 GLY GLY B . n B 1 54 PRO 54 53 53 PRO PRO B . n B 1 55 HIS 55 54 54 HIS HIS B . n B 1 56 PRO 56 55 55 PRO PRO B . n B 1 57 MSE 57 56 56 MSE MSE B . n B 1 58 TRP 58 57 57 TRP TRP B . n B 1 59 SER 59 58 58 SER SER B . n B 1 60 TYR 60 59 59 TYR TYR B . n B 1 61 GLN 61 60 60 GLN GLN B . n B 1 62 LEU 62 61 61 LEU LEU B . n B 1 63 ALA 63 62 62 ALA ALA B . n B 1 64 PHE 64 63 63 PHE PHE B . n B 1 65 THR 65 64 64 THR THR B . n B 1 66 GLN 66 65 65 GLN GLN B . n B 1 67 GLU 67 66 66 GLU GLU B . n B 1 68 GLN 68 67 67 GLN GLN B . n B 1 69 PHE 69 68 68 PHE PHE B . n B 1 70 ALA 70 69 69 ALA ALA B . n B 1 71 ASP 71 70 70 ASP ASP B . n B 1 72 LEU 72 71 71 LEU LEU B . n B 1 73 VAL 73 72 72 VAL VAL B . n B 1 74 GLY 74 73 73 GLY GLY B . n B 1 75 TRP 75 74 74 TRP TRP B . n B 1 76 LEU 76 75 75 LEU LEU B . n B 1 77 THR 77 76 76 THR THR B . n B 1 78 LEU 78 77 77 LEU LEU B . n B 1 79 ASN 79 78 78 ASN ASN B . n B 1 80 HIS 80 79 79 HIS HIS B . n B 1 81 GLY 81 80 80 GLY GLY B . n B 1 82 ALA 82 81 81 ALA ALA B . n B 1 83 LEU 83 82 82 LEU LEU B . n B 1 84 ASP 84 83 83 ASP ASP B . n B 1 85 ILE 85 84 84 ILE ILE B . n B 1 86 PHE 86 85 85 PHE PHE B . n B 1 87 LEU 87 86 86 LEU LEU B . n B 1 88 HIS 88 87 87 HIS HIS B . n B 1 89 PRO 89 88 88 PRO PRO B . n B 1 90 ASN 90 89 89 ASN ASN B . n B 1 91 THR 91 90 90 THR THR B . n B 1 92 GLY 92 91 91 GLY GLY B . n B 1 93 ASP 93 92 92 ASP ASP B . n B 1 94 ALA 94 93 93 ALA ALA B . n B 1 95 LEU 95 94 94 LEU LEU B . n B 1 96 ARG 96 95 95 ARG ARG B . n B 1 97 ASP 97 96 96 ASP ASP B . n B 1 98 HIS 98 97 97 HIS HIS B . n B 1 99 ARG 99 98 98 ARG ARG B . n B 1 100 ASP 100 99 99 ASP ASP B . n B 1 101 ALA 101 100 100 ALA ALA B . n B 1 102 ALA 102 101 101 ALA ALA B . n B 1 103 VAL 103 102 102 VAL VAL B . n B 1 104 TRP 104 103 103 TRP TRP B . n B 1 105 ILE 105 104 104 ILE ILE B . n B 1 106 GLY 106 105 105 GLY GLY B . n B 1 107 HIS 107 106 106 HIS HIS B . n B 1 108 SER 108 107 107 SER SER B . n B 1 109 HIS 109 108 108 HIS HIS B . n B 1 110 GLU 110 109 109 GLU GLU B . n B 1 111 LEU 111 110 110 LEU LEU B . n B 1 112 VAL 112 111 111 VAL VAL B . n B 1 113 LEU 113 112 112 LEU LEU B . n B 1 114 SER 114 113 113 SER SER B . n B 1 115 ALA 115 114 114 ALA ALA B . n B 1 116 LEU 116 115 115 LEU LEU B . n B 1 117 ASN 117 116 ? ? ? B . n # _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Joint Center for Structural Genomics' _pdbx_SG_project.id 1 _pdbx_SG_project.initial_of_center JCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 1 117 2 SO4 SO4 A . D 2 SO4 1 118 3 SO4 SO4 A . E 2 SO4 1 119 5 SO4 SO4 A . F 2 SO4 1 117 1 SO4 SO4 B . G 2 SO4 1 118 4 SO4 SO4 B . H 3 HOH 1 120 6 HOH HOH A . H 3 HOH 2 121 10 HOH HOH A . H 3 HOH 3 122 12 HOH HOH A . H 3 HOH 4 123 14 HOH HOH A . H 3 HOH 5 124 17 HOH HOH A . H 3 HOH 6 125 18 HOH HOH A . H 3 HOH 7 126 19 HOH HOH A . H 3 HOH 8 127 21 HOH HOH A . H 3 HOH 9 128 22 HOH HOH A . H 3 HOH 10 129 24 HOH HOH A . H 3 HOH 11 130 25 HOH HOH A . H 3 HOH 12 131 26 HOH HOH A . H 3 HOH 13 132 29 HOH HOH A . H 3 HOH 14 133 31 HOH HOH A . H 3 HOH 15 134 32 HOH HOH A . H 3 HOH 16 135 33 HOH HOH A . H 3 HOH 17 136 34 HOH HOH A . H 3 HOH 18 137 35 HOH HOH A . H 3 HOH 19 138 36 HOH HOH A . H 3 HOH 20 139 38 HOH HOH A . H 3 HOH 21 140 39 HOH HOH A . H 3 HOH 22 141 44 HOH HOH A . H 3 HOH 23 142 46 HOH HOH A . H 3 HOH 24 143 47 HOH HOH A . H 3 HOH 25 144 49 HOH HOH A . H 3 HOH 26 145 50 HOH HOH A . H 3 HOH 27 146 52 HOH HOH A . H 3 HOH 28 147 53 HOH HOH A . H 3 HOH 29 148 56 HOH HOH A . H 3 HOH 30 149 58 HOH HOH A . H 3 HOH 31 150 60 HOH HOH A . H 3 HOH 32 151 63 HOH HOH A . H 3 HOH 33 152 65 HOH HOH A . H 3 HOH 34 153 66 HOH HOH A . H 3 HOH 35 154 67 HOH HOH A . H 3 HOH 36 155 68 HOH HOH A . H 3 HOH 37 156 70 HOH HOH A . H 3 HOH 38 157 71 HOH HOH A . H 3 HOH 39 158 72 HOH HOH A . H 3 HOH 40 159 74 HOH HOH A . H 3 HOH 41 160 75 HOH HOH A . H 3 HOH 42 161 80 HOH HOH A . H 3 HOH 43 162 82 HOH HOH A . H 3 HOH 44 163 84 HOH HOH A . H 3 HOH 45 164 86 HOH HOH A . H 3 HOH 46 165 87 HOH HOH A . H 3 HOH 47 166 91 HOH HOH A . H 3 HOH 48 167 99 HOH HOH A . H 3 HOH 49 168 100 HOH HOH A . H 3 HOH 50 169 114 HOH HOH A . H 3 HOH 51 170 116 HOH HOH A . H 3 HOH 52 171 117 HOH HOH A . H 3 HOH 53 172 120 HOH HOH A . H 3 HOH 54 173 121 HOH HOH A . H 3 HOH 55 174 125 HOH HOH A . H 3 HOH 56 175 127 HOH HOH A . H 3 HOH 57 176 128 HOH HOH A . H 3 HOH 58 177 129 HOH HOH A . H 3 HOH 59 178 131 HOH HOH A . H 3 HOH 60 179 132 HOH HOH A . H 3 HOH 61 180 135 HOH HOH A . H 3 HOH 62 181 136 HOH HOH A . H 3 HOH 63 182 137 HOH HOH A . H 3 HOH 64 183 138 HOH HOH A . H 3 HOH 65 184 139 HOH HOH A . H 3 HOH 66 185 140 HOH HOH A . H 3 HOH 67 186 141 HOH HOH A . H 3 HOH 68 187 143 HOH HOH A . H 3 HOH 69 188 148 HOH HOH A . H 3 HOH 70 189 149 HOH HOH A . H 3 HOH 71 190 150 HOH HOH A . H 3 HOH 72 191 151 HOH HOH A . H 3 HOH 73 192 152 HOH HOH A . H 3 HOH 74 193 153 HOH HOH A . H 3 HOH 75 194 154 HOH HOH A . H 3 HOH 76 195 155 HOH HOH A . H 3 HOH 77 196 156 HOH HOH A . H 3 HOH 78 197 158 HOH HOH A . H 3 HOH 79 198 160 HOH HOH A . H 3 HOH 80 199 161 HOH HOH A . H 3 HOH 81 200 165 HOH HOH A . H 3 HOH 82 201 166 HOH HOH A . H 3 HOH 83 202 167 HOH HOH A . H 3 HOH 84 203 168 HOH HOH A . H 3 HOH 85 204 169 HOH HOH A . H 3 HOH 86 205 170 HOH HOH A . H 3 HOH 87 206 172 HOH HOH A . H 3 HOH 88 207 174 HOH HOH A . H 3 HOH 89 208 175 HOH HOH A . H 3 HOH 90 209 180 HOH HOH A . H 3 HOH 91 210 185 HOH HOH A . H 3 HOH 92 211 187 HOH HOH A . H 3 HOH 93 212 188 HOH HOH A . H 3 HOH 94 213 189 HOH HOH A . H 3 HOH 95 214 192 HOH HOH A . H 3 HOH 96 215 193 HOH HOH A . H 3 HOH 97 216 195 HOH HOH A . H 3 HOH 98 217 198 HOH HOH A . H 3 HOH 99 218 200 HOH HOH A . H 3 HOH 100 219 202 HOH HOH A . H 3 HOH 101 220 204 HOH HOH A . H 3 HOH 102 221 207 HOH HOH A . H 3 HOH 103 222 210 HOH HOH A . H 3 HOH 104 223 213 HOH HOH A . H 3 HOH 105 224 214 HOH HOH A . H 3 HOH 106 225 215 HOH HOH A . H 3 HOH 107 226 217 HOH HOH A . H 3 HOH 108 227 218 HOH HOH A . H 3 HOH 109 228 219 HOH HOH A . H 3 HOH 110 229 222 HOH HOH A . H 3 HOH 111 230 225 HOH HOH A . H 3 HOH 112 231 226 HOH HOH A . H 3 HOH 113 232 230 HOH HOH A . H 3 HOH 114 233 233 HOH HOH A . H 3 HOH 115 234 234 HOH HOH A . H 3 HOH 116 235 236 HOH HOH A . H 3 HOH 117 236 239 HOH HOH A . H 3 HOH 118 237 240 HOH HOH A . H 3 HOH 119 238 242 HOH HOH A . H 3 HOH 120 239 246 HOH HOH A . H 3 HOH 121 240 248 HOH HOH A . H 3 HOH 122 241 250 HOH HOH A . H 3 HOH 123 242 251 HOH HOH A . H 3 HOH 124 243 252 HOH HOH A . H 3 HOH 125 244 260 HOH HOH A . H 3 HOH 126 245 262 HOH HOH A . H 3 HOH 127 246 267 HOH HOH A . H 3 HOH 128 247 268 HOH HOH A . H 3 HOH 129 248 270 HOH HOH A . H 3 HOH 130 249 271 HOH HOH A . H 3 HOH 131 250 272 HOH HOH A . H 3 HOH 132 251 273 HOH HOH A . H 3 HOH 133 252 274 HOH HOH A . H 3 HOH 134 253 276 HOH HOH A . H 3 HOH 135 254 278 HOH HOH A . H 3 HOH 136 255 279 HOH HOH A . H 3 HOH 137 256 284 HOH HOH A . H 3 HOH 138 257 285 HOH HOH A . H 3 HOH 139 258 287 HOH HOH A . H 3 HOH 140 259 288 HOH HOH A . H 3 HOH 141 260 290 HOH HOH A . H 3 HOH 142 261 293 HOH HOH A . H 3 HOH 143 262 294 HOH HOH A . H 3 HOH 144 263 295 HOH HOH A . H 3 HOH 145 264 297 HOH HOH A . H 3 HOH 146 265 303 HOH HOH A . H 3 HOH 147 266 307 HOH HOH A . H 3 HOH 148 267 308 HOH HOH A . H 3 HOH 149 268 313 HOH HOH A . H 3 HOH 150 269 315 HOH HOH A . H 3 HOH 151 270 316 HOH HOH A . H 3 HOH 152 271 318 HOH HOH A . H 3 HOH 153 272 319 HOH HOH A . H 3 HOH 154 273 320 HOH HOH A . H 3 HOH 155 274 322 HOH HOH A . H 3 HOH 156 275 323 HOH HOH A . H 3 HOH 157 276 324 HOH HOH A . H 3 HOH 158 277 325 HOH HOH A . H 3 HOH 159 278 326 HOH HOH A . H 3 HOH 160 279 330 HOH HOH A . H 3 HOH 161 280 336 HOH HOH A . H 3 HOH 162 281 337 HOH HOH A . H 3 HOH 163 282 339 HOH HOH A . H 3 HOH 164 283 340 HOH HOH A . H 3 HOH 165 284 342 HOH HOH A . H 3 HOH 166 285 343 HOH HOH A . H 3 HOH 167 286 345 HOH HOH A . H 3 HOH 168 287 353 HOH HOH A . H 3 HOH 169 288 354 HOH HOH A . H 3 HOH 170 289 356 HOH HOH A . H 3 HOH 171 290 362 HOH HOH A . H 3 HOH 172 291 366 HOH HOH A . H 3 HOH 173 292 367 HOH HOH A . H 3 HOH 174 293 368 HOH HOH A . I 3 HOH 1 119 7 HOH HOH B . I 3 HOH 2 120 8 HOH HOH B . I 3 HOH 3 121 9 HOH HOH B . I 3 HOH 4 122 11 HOH HOH B . I 3 HOH 5 123 13 HOH HOH B . I 3 HOH 6 124 15 HOH HOH B . I 3 HOH 7 125 16 HOH HOH B . I 3 HOH 8 126 20 HOH HOH B . I 3 HOH 9 127 23 HOH HOH B . I 3 HOH 10 128 27 HOH HOH B . I 3 HOH 11 129 28 HOH HOH B . I 3 HOH 12 130 30 HOH HOH B . I 3 HOH 13 131 37 HOH HOH B . I 3 HOH 14 132 40 HOH HOH B . I 3 HOH 15 133 41 HOH HOH B . I 3 HOH 16 134 42 HOH HOH B . I 3 HOH 17 135 43 HOH HOH B . I 3 HOH 18 136 45 HOH HOH B . I 3 HOH 19 137 48 HOH HOH B . I 3 HOH 20 138 51 HOH HOH B . I 3 HOH 21 139 54 HOH HOH B . I 3 HOH 22 140 55 HOH HOH B . I 3 HOH 23 141 57 HOH HOH B . I 3 HOH 24 142 59 HOH HOH B . I 3 HOH 25 143 61 HOH HOH B . I 3 HOH 26 144 62 HOH HOH B . I 3 HOH 27 145 64 HOH HOH B . I 3 HOH 28 146 69 HOH HOH B . I 3 HOH 29 147 73 HOH HOH B . I 3 HOH 30 148 76 HOH HOH B . I 3 HOH 31 149 77 HOH HOH B . I 3 HOH 32 150 78 HOH HOH B . I 3 HOH 33 151 79 HOH HOH B . I 3 HOH 34 152 81 HOH HOH B . I 3 HOH 35 153 83 HOH HOH B . I 3 HOH 36 154 85 HOH HOH B . I 3 HOH 37 155 88 HOH HOH B . I 3 HOH 38 156 89 HOH HOH B . I 3 HOH 39 157 90 HOH HOH B . I 3 HOH 40 158 92 HOH HOH B . I 3 HOH 41 159 93 HOH HOH B . I 3 HOH 42 160 94 HOH HOH B . I 3 HOH 43 161 95 HOH HOH B . I 3 HOH 44 162 96 HOH HOH B . I 3 HOH 45 163 97 HOH HOH B . I 3 HOH 46 164 98 HOH HOH B . I 3 HOH 47 165 101 HOH HOH B . I 3 HOH 48 166 102 HOH HOH B . I 3 HOH 49 167 103 HOH HOH B . I 3 HOH 50 168 104 HOH HOH B . I 3 HOH 51 169 105 HOH HOH B . I 3 HOH 52 170 106 HOH HOH B . I 3 HOH 53 171 107 HOH HOH B . I 3 HOH 54 172 108 HOH HOH B . I 3 HOH 55 173 109 HOH HOH B . I 3 HOH 56 174 110 HOH HOH B . I 3 HOH 57 175 111 HOH HOH B . I 3 HOH 58 176 112 HOH HOH B . I 3 HOH 59 177 113 HOH HOH B . I 3 HOH 60 178 115 HOH HOH B . I 3 HOH 61 179 118 HOH HOH B . I 3 HOH 62 180 119 HOH HOH B . I 3 HOH 63 181 122 HOH HOH B . I 3 HOH 64 182 123 HOH HOH B . I 3 HOH 65 183 124 HOH HOH B . I 3 HOH 66 184 126 HOH HOH B . I 3 HOH 67 185 130 HOH HOH B . I 3 HOH 68 186 133 HOH HOH B . I 3 HOH 69 187 134 HOH HOH B . I 3 HOH 70 188 142 HOH HOH B . I 3 HOH 71 189 144 HOH HOH B . I 3 HOH 72 190 145 HOH HOH B . I 3 HOH 73 191 146 HOH HOH B . I 3 HOH 74 192 147 HOH HOH B . I 3 HOH 75 193 157 HOH HOH B . I 3 HOH 76 194 159 HOH HOH B . I 3 HOH 77 195 162 HOH HOH B . I 3 HOH 78 196 163 HOH HOH B . I 3 HOH 79 197 164 HOH HOH B . I 3 HOH 80 198 171 HOH HOH B . I 3 HOH 81 199 173 HOH HOH B . I 3 HOH 82 200 176 HOH HOH B . I 3 HOH 83 201 177 HOH HOH B . I 3 HOH 84 202 178 HOH HOH B . I 3 HOH 85 203 179 HOH HOH B . I 3 HOH 86 204 181 HOH HOH B . I 3 HOH 87 205 182 HOH HOH B . I 3 HOH 88 206 183 HOH HOH B . I 3 HOH 89 207 184 HOH HOH B . I 3 HOH 90 208 186 HOH HOH B . I 3 HOH 91 209 190 HOH HOH B . I 3 HOH 92 210 191 HOH HOH B . I 3 HOH 93 211 194 HOH HOH B . I 3 HOH 94 212 196 HOH HOH B . I 3 HOH 95 213 197 HOH HOH B . I 3 HOH 96 214 199 HOH HOH B . I 3 HOH 97 215 201 HOH HOH B . I 3 HOH 98 216 203 HOH HOH B . I 3 HOH 99 217 205 HOH HOH B . I 3 HOH 100 218 206 HOH HOH B . I 3 HOH 101 219 208 HOH HOH B . I 3 HOH 102 220 209 HOH HOH B . I 3 HOH 103 221 211 HOH HOH B . I 3 HOH 104 222 212 HOH HOH B . I 3 HOH 105 223 216 HOH HOH B . I 3 HOH 106 224 220 HOH HOH B . I 3 HOH 107 225 221 HOH HOH B . I 3 HOH 108 226 223 HOH HOH B . I 3 HOH 109 227 224 HOH HOH B . I 3 HOH 110 228 227 HOH HOH B . I 3 HOH 111 229 228 HOH HOH B . I 3 HOH 112 230 229 HOH HOH B . I 3 HOH 113 231 231 HOH HOH B . I 3 HOH 114 232 232 HOH HOH B . I 3 HOH 115 233 235 HOH HOH B . I 3 HOH 116 234 237 HOH HOH B . I 3 HOH 117 235 238 HOH HOH B . I 3 HOH 118 236 241 HOH HOH B . I 3 HOH 119 237 243 HOH HOH B . I 3 HOH 120 238 244 HOH HOH B . I 3 HOH 121 239 245 HOH HOH B . I 3 HOH 122 240 247 HOH HOH B . I 3 HOH 123 241 249 HOH HOH B . I 3 HOH 124 242 253 HOH HOH B . I 3 HOH 125 243 254 HOH HOH B . I 3 HOH 126 244 255 HOH HOH B . I 3 HOH 127 245 256 HOH HOH B . I 3 HOH 128 246 257 HOH HOH B . I 3 HOH 129 247 258 HOH HOH B . I 3 HOH 130 248 259 HOH HOH B . I 3 HOH 131 249 261 HOH HOH B . I 3 HOH 132 250 263 HOH HOH B . I 3 HOH 133 251 264 HOH HOH B . I 3 HOH 134 252 265 HOH HOH B . I 3 HOH 135 253 266 HOH HOH B . I 3 HOH 136 254 269 HOH HOH B . I 3 HOH 137 255 275 HOH HOH B . I 3 HOH 138 256 277 HOH HOH B . I 3 HOH 139 257 280 HOH HOH B . I 3 HOH 140 258 281 HOH HOH B . I 3 HOH 141 259 282 HOH HOH B . I 3 HOH 142 260 283 HOH HOH B . I 3 HOH 143 261 286 HOH HOH B . I 3 HOH 144 262 289 HOH HOH B . I 3 HOH 145 263 291 HOH HOH B . I 3 HOH 146 264 292 HOH HOH B . I 3 HOH 147 265 296 HOH HOH B . I 3 HOH 148 266 298 HOH HOH B . I 3 HOH 149 267 299 HOH HOH B . I 3 HOH 150 268 300 HOH HOH B . I 3 HOH 151 269 301 HOH HOH B . I 3 HOH 152 270 302 HOH HOH B . I 3 HOH 153 271 304 HOH HOH B . I 3 HOH 154 272 305 HOH HOH B . I 3 HOH 155 273 306 HOH HOH B . I 3 HOH 156 274 309 HOH HOH B . I 3 HOH 157 275 310 HOH HOH B . I 3 HOH 158 276 311 HOH HOH B . I 3 HOH 159 277 312 HOH HOH B . I 3 HOH 160 278 314 HOH HOH B . I 3 HOH 161 279 317 HOH HOH B . I 3 HOH 162 280 321 HOH HOH B . I 3 HOH 163 281 327 HOH HOH B . I 3 HOH 164 282 328 HOH HOH B . I 3 HOH 165 283 329 HOH HOH B . I 3 HOH 166 284 331 HOH HOH B . I 3 HOH 167 285 332 HOH HOH B . I 3 HOH 168 286 333 HOH HOH B . I 3 HOH 169 287 334 HOH HOH B . I 3 HOH 170 288 335 HOH HOH B . I 3 HOH 171 289 338 HOH HOH B . I 3 HOH 172 290 341 HOH HOH B . I 3 HOH 173 291 344 HOH HOH B . I 3 HOH 174 292 346 HOH HOH B . I 3 HOH 175 293 347 HOH HOH B . I 3 HOH 176 294 348 HOH HOH B . I 3 HOH 177 295 349 HOH HOH B . I 3 HOH 178 296 350 HOH HOH B . I 3 HOH 179 297 351 HOH HOH B . I 3 HOH 180 298 352 HOH HOH B . I 3 HOH 181 299 355 HOH HOH B . I 3 HOH 182 300 357 HOH HOH B . I 3 HOH 183 301 358 HOH HOH B . I 3 HOH 184 302 359 HOH HOH B . I 3 HOH 185 303 360 HOH HOH B . I 3 HOH 186 304 361 HOH HOH B . I 3 HOH 187 305 363 HOH HOH B . I 3 HOH 188 306 364 HOH HOH B . I 3 HOH 189 307 365 HOH HOH B . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 2 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 57 A MSE 56 ? MET SELENOMETHIONINE 3 B MSE 2 B MSE 1 ? MET SELENOMETHIONINE 4 B MSE 57 B MSE 56 ? MET SELENOMETHIONINE # loop_ _pdbx_struct_assembly.id _pdbx_struct_assembly.details _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count 1 author_and_software_defined_assembly PISA dimeric 2 2 software_defined_assembly PISA tetrameric 4 3 software_defined_assembly PISA tetrameric 4 # loop_ _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression _pdbx_struct_assembly_gen.asym_id_list 1 1 A,B,C,D,E,F,G,H,I 2 1,2 A,C,D,E,H 2 3,4 B,F,G,I 3 1,2 A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 3620 ? 1 MORE -86 ? 1 'SSA (A^2)' 10890 ? 2 'ABSA (A^2)' 5980 ? 2 MORE -155 ? 2 'SSA (A^2)' 23030 ? 3 'ABSA (A^2)' 7850 ? 3 MORE -188 ? 3 'SSA (A^2)' 21170 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 3_555 -x,y,-z+1/2 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 44.2855000000 3 'crystal symmetry operation' 6_555 -x+1/2,-y+1/2,z+1/2 -1.0000000000 0.0000000000 0.0000000000 35.4850000000 0.0000000000 -1.0000000000 0.0000000000 44.1520000000 0.0000000000 0.0000000000 1.0000000000 44.2855000000 4 'crystal symmetry operation' 8_455 x-1/2,-y+1/2,-z 1.0000000000 0.0000000000 0.0000000000 -35.4850000000 0.0000000000 -1.0000000000 0.0000000000 44.1520000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A HOH 163 ? H HOH . 2 1 A HOH 243 ? H HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-12-12 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-18 5 'Structure model' 1 4 2023-01-25 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Database references' 5 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_conn 4 5 'Structure model' struct_ref_seq_dif 5 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.classification' 2 4 'Structure model' '_software.name' 3 5 'Structure model' '_database_2.pdbx_DOI' 4 5 'Structure model' '_database_2.pdbx_database_accession' 5 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 6 5 'Structure model' '_struct_ref_seq_dif.details' 7 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 8 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 9 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _phasing.method MAD # loop_ _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id _software.pdbx_ordinal MolProbity 3beta29 ? package 'D.C. & J.S. Richardson lab' molprobity@kinemage.biochem.duke.edu 'model building' http://kinemage.biochem.duke.edu/molprobity/ ? ? 1 SHELX . ? package 'George Sheldrick' gsheldr@shelx.uni-ac.gwdg.de phasing http://shelx.uni-ac.gwdg.de/SHELX/ Fortran_77 ? 2 REFMAC 5.2.0019 ? program 'Murshudov, G.N.' ccp4@dl.ac.uk refinement http://www.ccp4.ac.uk/main.html Fortran_77 ? 3 SCALA . ? other 'Phil Evans' pre@mrc-lmb.cam.ac.uk 'data scaling' http://www.ccp4.ac.uk/dist/html/INDEX.html Fortran_77 ? 4 PDB_EXTRACT 2.000 'April. 3, 2006' package PDB sw-help@rcsb.rutgers.edu 'data extraction' http://pdb.rutgers.edu/software/ C++ ? 5 MOSFLM . ? ? ? ? 'data reduction' ? ? ? 6 CCP4 '(SCALA)' ? ? ? ? 'data scaling' ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 autoSHARP . ? ? ? ? phasing ? ? ? 9 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ; BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 CHAIN(S). SEE REMARK 350 FOR INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). SIZE EXCLUSION CHROMATOGRAPHY WITH STATIC LIGHT SCATTERING SUPPORTS THE ASSIGNMENT OF A DIMER AS A BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE. ; # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 48 ? ? -99.96 43.99 2 1 GLU B 48 ? ? -105.23 45.18 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ASN 116 ? A ASN 117 2 1 Y 1 B GLY 0 ? B GLY 1 3 1 Y 1 B ASN 116 ? B ASN 117 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 water HOH #