HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 21-NOV-06 2NYS TITLE X-RAY CRYSTAL STRUCTURE OF PROTEIN AGR_C_3712 FROM AGROBACTERIUM TITLE 2 TUMEFACIENS. NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET ATR88. COMPND MOL_ID: 1; COMPND 2 MOLECULE: AGR_C_3712P; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AGROBACTERIUM TUMEFACIENS STR. C58; SOURCE 3 ORGANISM_TAXID: 176299; SOURCE 4 STRAIN: C58-ATCC 33970; SOURCE 5 GENE: AGR_C3712; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: PET21 KEYWDS AGR_C_3712, SSPB, STRINGENT STARVATION PROTEIN B, NESG, ATR88, KEYWDS 2 STRUCTURAL GENOMICS, PSI-2, PROTEIN STRUCTURE INITIATIVE, NORTHEAST KEYWDS 3 STRUCTURAL GENOMICS CONSORTIUM, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR S.M.VOROBIEV,M.ABASHIDZE,J.SEETHARAMAN,L.ZHAO,L.C.MA,K.CUNNINGHAM, AUTHOR 2 C.NWOSU,R.XIAO,T.B.ACTON,G.T.MONTELIONE,L.TONG,J.F.HUNT,NORTHEAST AUTHOR 3 STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 5 27-DEC-23 2NYS 1 REMARK REVDAT 4 20-OCT-21 2NYS 1 SEQADV LINK REVDAT 3 18-OCT-17 2NYS 1 REMARK REVDAT 2 24-FEB-09 2NYS 1 VERSN REVDAT 1 05-DEC-06 2NYS 0 JRNL AUTH S.M.VOROBIEV,M.ABASHIDZE,J.SEETHARAMAN,L.ZHAO,L.C.MA, JRNL AUTH 2 K.CUNNINGHAM,C.NWOSU,T.B.ACTON,R.XIAO,G.T.MONTELIONE,L.TONG, JRNL AUTH 3 J.F.HUNT JRNL TITL CRYSTAL STRUCTURE OF THE HYPOTHETICAL PROTEIN AGR_C_3712 JRNL TITL 2 FROM AGROBACTERIUM TUMEFACIENS. JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.79 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 117149.440 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 84.7 REMARK 3 NUMBER OF REFLECTIONS : 24328 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.242 REMARK 3 FREE R VALUE : 0.268 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.000 REMARK 3 FREE R VALUE TEST SET COUNT : 961 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.30 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2724 REMARK 3 BIN R VALUE (WORKING SET) : 0.3570 REMARK 3 BIN FREE R VALUE : 0.4040 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 127 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.036 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1836 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 34 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.60 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.37000 REMARK 3 B22 (A**2) : 0.37000 REMARK 3 B33 (A**2) : -0.74000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.40 REMARK 3 ESD FROM SIGMAA (A) : 0.51 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.48 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.47 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 34.36 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NYS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040470. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929, 0.97956, 0.96791 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27602 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.1 REMARK 200 DATA REDUNDANCY : 3.700 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.8600 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 87.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.56000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.760 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SNB, RESOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.34 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 27% PEG 400, 0.1 M MES, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 8555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 68.77500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 68.77500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 28.55650 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 68.77500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 68.77500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 28.55650 REMARK 290 SMTRY1 7 0.000000 -1.000000 0.000000 68.77500 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 68.77500 REMARK 290 SMTRY3 7 0.000000 0.000000 1.000000 28.55650 REMARK 290 SMTRY1 8 0.000000 1.000000 0.000000 68.77500 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 68.77500 REMARK 290 SMTRY3 8 0.000000 0.000000 1.000000 28.55650 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1790 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12060 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 GLY A 2 REMARK 465 LEU A 120 REMARK 465 ALA A 121 REMARK 465 LYS A 122 REMARK 465 GLU A 123 REMARK 465 GLU A 124 REMARK 465 GLU A 125 REMARK 465 MSE A 126 REMARK 465 GLU A 127 REMARK 465 GLU A 128 REMARK 465 ALA A 129 REMARK 465 GLU A 130 REMARK 465 ILE A 131 REMARK 465 THR A 132 REMARK 465 ALA A 133 REMARK 465 TYR A 134 REMARK 465 PRO A 135 REMARK 465 VAL A 136 REMARK 465 SER A 137 REMARK 465 HIS A 138 REMARK 465 GLU A 139 REMARK 465 ALA A 140 REMARK 465 LYS A 141 REMARK 465 PRO A 142 REMARK 465 ALA A 143 REMARK 465 SER A 144 REMARK 465 GLU A 145 REMARK 465 THR A 146 REMARK 465 PRO A 147 REMARK 465 LYS A 148 REMARK 465 SER A 149 REMARK 465 GLY A 150 REMARK 465 GLU A 151 REMARK 465 GLU A 152 REMARK 465 LYS A 153 REMARK 465 LYS A 154 REMARK 465 GLU A 155 REMARK 465 GLY A 156 REMARK 465 SER A 157 REMARK 465 VAL A 158 REMARK 465 VAL A 159 REMARK 465 SER A 160 REMARK 465 LEU A 161 REMARK 465 ASP A 162 REMARK 465 ALA A 163 REMARK 465 PHE A 164 REMARK 465 ARG A 165 REMARK 465 LYS A 166 REMARK 465 LYS A 167 REMARK 465 GLN A 168 REMARK 465 LEU A 169 REMARK 465 GLU A 170 REMARK 465 HIS A 171 REMARK 465 HIS A 172 REMARK 465 HIS A 173 REMARK 465 HIS A 174 REMARK 465 HIS A 175 REMARK 465 HIS A 176 REMARK 465 MSE B 1 REMARK 465 GLY B 2 REMARK 465 GLN B 3 REMARK 465 PRO B 119 REMARK 465 LEU B 120 REMARK 465 ALA B 121 REMARK 465 LYS B 122 REMARK 465 GLU B 123 REMARK 465 GLU B 124 REMARK 465 GLU B 125 REMARK 465 MSE B 126 REMARK 465 GLU B 127 REMARK 465 GLU B 128 REMARK 465 ALA B 129 REMARK 465 GLU B 130 REMARK 465 ILE B 131 REMARK 465 THR B 132 REMARK 465 ALA B 133 REMARK 465 TYR B 134 REMARK 465 PRO B 135 REMARK 465 VAL B 136 REMARK 465 SER B 137 REMARK 465 HIS B 138 REMARK 465 GLU B 139 REMARK 465 ALA B 140 REMARK 465 LYS B 141 REMARK 465 PRO B 142 REMARK 465 ALA B 143 REMARK 465 SER B 144 REMARK 465 GLU B 145 REMARK 465 THR B 146 REMARK 465 PRO B 147 REMARK 465 LYS B 148 REMARK 465 SER B 149 REMARK 465 GLY B 150 REMARK 465 GLU B 151 REMARK 465 GLU B 152 REMARK 465 LYS B 153 REMARK 465 LYS B 154 REMARK 465 GLU B 155 REMARK 465 GLY B 156 REMARK 465 SER B 157 REMARK 465 VAL B 158 REMARK 465 VAL B 159 REMARK 465 SER B 160 REMARK 465 LEU B 161 REMARK 465 ASP B 162 REMARK 465 ALA B 163 REMARK 465 PHE B 164 REMARK 465 ARG B 165 REMARK 465 LYS B 166 REMARK 465 LYS B 167 REMARK 465 GLN B 168 REMARK 465 LEU B 169 REMARK 465 GLU B 170 REMARK 465 HIS B 171 REMARK 465 HIS B 172 REMARK 465 HIS B 173 REMARK 465 HIS B 174 REMARK 465 HIS B 175 REMARK 465 HIS B 176 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 3 CG CD OE1 NE2 REMARK 470 GLU A 26 CG CD OE1 OE2 REMARK 470 GLN A 54 CG CD OE1 NE2 REMARK 470 GLU A 79 CG CD OE1 OE2 REMARK 470 VAL A 118 CG1 CG2 REMARK 470 ARG B 32 CG CD NE CZ NH1 NH2 REMARK 470 ASP B 36 CG OD1 OD2 REMARK 470 HIS B 70 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 86 CA - CB - CG ANGL. DEV. = 14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 7 80.72 55.92 REMARK 500 ALA A 47 150.47 -45.77 REMARK 500 GLU A 62 -37.08 -130.41 REMARK 500 GLN A 69 -70.25 -146.62 REMARK 500 THR A 78 -162.44 -118.37 REMARK 500 ASN A 111 57.60 37.03 REMARK 500 VAL B 23 -76.44 -56.81 REMARK 500 HIS B 38 146.67 176.76 REMARK 500 ILE B 52 -156.64 -131.67 REMARK 500 ALA B 61 -46.41 -25.12 REMARK 500 GLU B 62 -60.45 -99.47 REMARK 500 HIS B 70 -81.80 -2.72 REMARK 500 ASP B 74 16.14 53.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1OU8 RELATED DB: PDB REMARK 900 RELATED ID: 1OX8 RELATED DB: PDB REMARK 900 RELATED ID: ATR88 RELATED DB: TARGETDB DBREF 2NYS A 1 168 UNP Q8U561 Q8U561_AGRT5 1 168 DBREF 2NYS B 1 168 UNP Q8U561 Q8U561_AGRT5 1 168 SEQADV 2NYS MSE A 1 UNP Q8U561 MET 1 MODIFIED RESIDUE SEQADV 2NYS MSE A 64 UNP Q8U561 MET 64 MODIFIED RESIDUE SEQADV 2NYS MSE A 75 UNP Q8U561 MET 75 MODIFIED RESIDUE SEQADV 2NYS LYS A 122 UNP Q8U561 GLU 122 ENGINEERED MUTATION SEQADV 2NYS MSE A 126 UNP Q8U561 MET 126 MODIFIED RESIDUE SEQADV 2NYS LEU A 169 UNP Q8U561 CLONING ARTIFACT SEQADV 2NYS GLU A 170 UNP Q8U561 CLONING ARTIFACT SEQADV 2NYS HIS A 171 UNP Q8U561 EXPRESSION TAG SEQADV 2NYS HIS A 172 UNP Q8U561 EXPRESSION TAG SEQADV 2NYS HIS A 173 UNP Q8U561 EXPRESSION TAG SEQADV 2NYS HIS A 174 UNP Q8U561 EXPRESSION TAG SEQADV 2NYS HIS A 175 UNP Q8U561 EXPRESSION TAG SEQADV 2NYS HIS A 176 UNP Q8U561 EXPRESSION TAG SEQADV 2NYS MSE B 1 UNP Q8U561 MET 1 MODIFIED RESIDUE SEQADV 2NYS MSE B 64 UNP Q8U561 MET 64 MODIFIED RESIDUE SEQADV 2NYS MSE B 75 UNP Q8U561 MET 75 MODIFIED RESIDUE SEQADV 2NYS LYS B 122 UNP Q8U561 GLU 122 ENGINEERED MUTATION SEQADV 2NYS MSE B 126 UNP Q8U561 MET 126 MODIFIED RESIDUE SEQADV 2NYS LEU B 169 UNP Q8U561 CLONING ARTIFACT SEQADV 2NYS GLU B 170 UNP Q8U561 CLONING ARTIFACT SEQADV 2NYS HIS B 171 UNP Q8U561 EXPRESSION TAG SEQADV 2NYS HIS B 172 UNP Q8U561 EXPRESSION TAG SEQADV 2NYS HIS B 173 UNP Q8U561 EXPRESSION TAG SEQADV 2NYS HIS B 174 UNP Q8U561 EXPRESSION TAG SEQADV 2NYS HIS B 175 UNP Q8U561 EXPRESSION TAG SEQADV 2NYS HIS B 176 UNP Q8U561 EXPRESSION TAG SEQRES 1 A 176 MSE GLY GLN ASP HIS ILE ARG TYR ASP ILE LEU ALA GLN SEQRES 2 A 176 ASP ALA LEU ARG GLY VAL ILE ARG LYS VAL LEU GLY GLU SEQRES 3 A 176 VAL ALA ALA THR GLY ARG LEU PRO GLY ASP HIS HIS PHE SEQRES 4 A 176 PHE ILE THR PHE LEU THR GLY ALA PRO GLY VAL ARG ILE SEQRES 5 A 176 SER GLN HIS LEU LYS SER LYS TYR ALA GLU GLN MSE THR SEQRES 6 A 176 ILE VAL ILE GLN HIS GLN PHE TRP ASP MSE LYS VAL THR SEQRES 7 A 176 GLU THR GLY PHE GLU ILE GLY LEU SER PHE SER ASP THR SEQRES 8 A 176 PRO GLU LYS LEU VAL ILE PRO TYR ASN ALA ILE ARG GLY SEQRES 9 A 176 PHE TYR ASP PRO SER VAL ASN PHE GLU LEU GLU PHE ASP SEQRES 10 A 176 VAL PRO LEU ALA LYS GLU GLU GLU MSE GLU GLU ALA GLU SEQRES 11 A 176 ILE THR ALA TYR PRO VAL SER HIS GLU ALA LYS PRO ALA SEQRES 12 A 176 SER GLU THR PRO LYS SER GLY GLU GLU LYS LYS GLU GLY SEQRES 13 A 176 SER VAL VAL SER LEU ASP ALA PHE ARG LYS LYS GLN LEU SEQRES 14 A 176 GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 176 MSE GLY GLN ASP HIS ILE ARG TYR ASP ILE LEU ALA GLN SEQRES 2 B 176 ASP ALA LEU ARG GLY VAL ILE ARG LYS VAL LEU GLY GLU SEQRES 3 B 176 VAL ALA ALA THR GLY ARG LEU PRO GLY ASP HIS HIS PHE SEQRES 4 B 176 PHE ILE THR PHE LEU THR GLY ALA PRO GLY VAL ARG ILE SEQRES 5 B 176 SER GLN HIS LEU LYS SER LYS TYR ALA GLU GLN MSE THR SEQRES 6 B 176 ILE VAL ILE GLN HIS GLN PHE TRP ASP MSE LYS VAL THR SEQRES 7 B 176 GLU THR GLY PHE GLU ILE GLY LEU SER PHE SER ASP THR SEQRES 8 B 176 PRO GLU LYS LEU VAL ILE PRO TYR ASN ALA ILE ARG GLY SEQRES 9 B 176 PHE TYR ASP PRO SER VAL ASN PHE GLU LEU GLU PHE ASP SEQRES 10 B 176 VAL PRO LEU ALA LYS GLU GLU GLU MSE GLU GLU ALA GLU SEQRES 11 B 176 ILE THR ALA TYR PRO VAL SER HIS GLU ALA LYS PRO ALA SEQRES 12 B 176 SER GLU THR PRO LYS SER GLY GLU GLU LYS LYS GLU GLY SEQRES 13 B 176 SER VAL VAL SER LEU ASP ALA PHE ARG LYS LYS GLN LEU SEQRES 14 B 176 GLU HIS HIS HIS HIS HIS HIS MODRES 2NYS MSE A 64 MET SELENOMETHIONINE MODRES 2NYS MSE A 75 MET SELENOMETHIONINE MODRES 2NYS MSE B 64 MET SELENOMETHIONINE MODRES 2NYS MSE B 75 MET SELENOMETHIONINE HET MSE A 64 8 HET MSE A 75 8 HET MSE B 64 8 HET MSE B 75 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 4(C5 H11 N O2 SE) FORMUL 3 HOH *34(H2 O) HELIX 1 1 ARG A 7 GLY A 31 1 25 HELIX 2 2 SER A 53 TYR A 60 1 8 HELIX 3 3 PRO A 108 ASN A 111 5 4 HELIX 4 4 ARG B 7 ALA B 28 1 22 HELIX 5 5 SER B 53 SER B 58 1 6 SHEET 1 A 4 GLN A 63 ILE A 68 0 SHEET 2 A 4 PHE A 39 LEU A 44 -1 N ILE A 41 O ILE A 66 SHEET 3 A 4 ILE A 102 ASP A 107 -1 O ARG A 103 N THR A 42 SHEET 4 A 4 PHE A 112 GLU A 115 -1 O LEU A 114 N PHE A 105 SHEET 1 B 3 TRP A 73 VAL A 77 0 SHEET 2 B 3 GLY A 81 PHE A 88 -1 O GLU A 83 N LYS A 76 SHEET 3 B 3 THR A 91 PRO A 98 -1 O ILE A 97 N PHE A 82 SHEET 1 C 4 GLN B 63 THR B 65 0 SHEET 2 C 4 PHE B 40 LEU B 44 -1 N PHE B 43 O MSE B 64 SHEET 3 C 4 ILE B 102 ASP B 107 -1 O GLY B 104 N THR B 42 SHEET 4 C 4 PHE B 112 GLU B 115 -1 O PHE B 112 N ASP B 107 SHEET 1 D 3 TRP B 73 VAL B 77 0 SHEET 2 D 3 GLY B 81 GLY B 85 -1 O GLU B 83 N LYS B 76 SHEET 3 D 3 LYS B 94 PRO B 98 -1 O ILE B 97 N PHE B 82 LINK C GLN A 63 N MSE A 64 1555 1555 1.32 LINK C MSE A 64 N THR A 65 1555 1555 1.32 LINK C ASP A 74 N MSE A 75 1555 1555 1.32 LINK C MSE A 75 N LYS A 76 1555 1555 1.32 LINK C GLN B 63 N MSE B 64 1555 1555 1.33 LINK C MSE B 64 N THR B 65 1555 1555 1.33 LINK C ASP B 74 N MSE B 75 1555 1555 1.33 LINK C MSE B 75 N LYS B 76 1555 1555 1.33 CRYST1 137.550 137.550 57.113 90.00 90.00 90.00 I 4 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007270 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007270 0.000000 0.00000 SCALE3 0.000000 0.000000 0.017509 0.00000