HEADER VIRAL PROTEIN/CYTOKINE 21-NOV-06 2NYZ TITLE VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE GAMMAHERPESVIRUS68 IN TITLE 2 COMPLEX WITH THE C- CHEMOKINE XCL1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HYPOTHETICAL PROTEIN GAMMAHV.M3; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: M3 PROTEIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: LYMPHOTACTIN; COMPND 8 CHAIN: D, E; COMPND 9 SYNONYM: XCL1, CYTOKINE SCM-1, ATAC, LYMPHOTAXIN, SCM-1-ALPHA, SMALL COMPND 10 INDUCIBLE CYTOKINE C1, XC CHEMOKINE LIGAND 1; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MURID HERPESVIRUS 4; SOURCE 3 ORGANISM_COMMON: MURINE HERPESVIRUS 68; SOURCE 4 ORGANISM_TAXID: 33708; SOURCE 5 GENE: GAMMAHV.M3, M3; SOURCE 6 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 7 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 9 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PFB-1; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 15 OF THE PEPTIDE CAN BE NATURALLY FOUND IN HOMO SAPIENS (HUMAN). KEYWDS VIRAL DECOY RECEPTOR, CHEMOKINE, PROTEIN-PROTEIN COMPLEX, VIRAL KEYWDS 2 PROTEIN-CYTOKINE COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR J.M.ALEXANDER-BRETT,D.H.FREMONT REVDAT 4 30-AUG-23 2NYZ 1 REMARK REVDAT 3 24-FEB-09 2NYZ 1 VERSN REVDAT 2 12-FEB-08 2NYZ 1 JRNL REVDAT 1 25-DEC-07 2NYZ 0 JRNL AUTH J.M.ALEXANDER-BRETT,D.H.FREMONT JRNL TITL DUAL GPCR AND GAG MIMICRY BY THE M3 CHEMOKINE DECOY JRNL TITL 2 RECEPTOR. JRNL REF J.EXP.MED. V. 204 3157 2007 JRNL REFN ISSN 0022-1007 JRNL PMID 18070938 JRNL DOI 10.1084/JEM.20071677 REMARK 2 REMARK 2 RESOLUTION. 2.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.95 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 588744.740 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 35559 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.272 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1771 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.006 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 79.20 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4850 REMARK 3 BIN R VALUE (WORKING SET) : 0.3730 REMARK 3 BIN FREE R VALUE : 0.4220 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 280 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6718 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 194 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 17.94000 REMARK 3 B22 (A**2) : 0.98000 REMARK 3 B33 (A**2) : -18.92000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.36 REMARK 3 ESD FROM SIGMAA (A) : 0.46 REMARK 3 LOW RESOLUTION CUTOFF (A) : 20.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.46 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.56 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.30 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.960 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.410 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.170 ; 3.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 4.920 ; 4.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.950 ; 5.000 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.32 REMARK 3 BSOL : 36.57 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 2NYZ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040477. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 22-JUN-01 REMARK 200 TEMPERATURE (KELVIN) : 173 REMARK 200 PH : 6.1 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35559 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.01000 REMARK 200 FOR THE DATA SET : 16.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 79.2 REMARK 200 DATA REDUNDANCY IN SHELL : 2.00 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.49000 REMARK 200 FOR SHELL : 2.700 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1ML0 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 10% PEG 8000, 100 MM TRIS, PH 6.1, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 X+1/2,Y+1/2,Z+1/2 REMARK 290 6555 -X,-Y+1/2,Z REMARK 290 7555 -X+1/2,Y,-Z REMARK 290 8555 X,-Y,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 42.18500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 145.47000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 51.59500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 145.47000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 42.18500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 51.59500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 42.18500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 51.59500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 145.47000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 51.59500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 42.18500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 145.47000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: ASYMMETRIC UNIT CONTAINS BIOLOGICAL UNIT (2 MONOMERS) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LEU A 1 REMARK 465 THR A 2 REMARK 465 LEU A 3 REMARK 465 GLY A 4 REMARK 465 LEU A 5 REMARK 465 ALA A 6 REMARK 465 PRO A 7 REMARK 465 ALA A 8 REMARK 465 LEU A 9 REMARK 465 SER A 10 REMARK 465 THR A 11 REMARK 465 LEU B 1 REMARK 465 THR B 2 REMARK 465 LEU B 3 REMARK 465 GLY B 4 REMARK 465 LEU B 5 REMARK 465 ALA B 6 REMARK 465 PRO B 7 REMARK 465 ALA B 8 REMARK 465 LEU B 9 REMARK 465 SER B 10 REMARK 465 THR B 11 REMARK 465 VAL D 1 REMARK 465 GLY D 2 REMARK 465 SER D 3 REMARK 465 GLU D 4 REMARK 465 VAL D 5 REMARK 465 SER D 6 REMARK 465 ASN D 68 REMARK 465 THR D 69 REMARK 465 ARG D 70 REMARK 465 ASN D 71 REMARK 465 ASN D 72 REMARK 465 MET D 73 REMARK 465 ILE D 74 REMARK 465 GLN D 75 REMARK 465 THR D 76 REMARK 465 LYS D 77 REMARK 465 PRO D 78 REMARK 465 THR D 79 REMARK 465 GLY D 80 REMARK 465 THR D 81 REMARK 465 GLN D 82 REMARK 465 GLN D 83 REMARK 465 SER D 84 REMARK 465 THR D 85 REMARK 465 ASN D 86 REMARK 465 THR D 87 REMARK 465 ALA D 88 REMARK 465 VAL D 89 REMARK 465 THR D 90 REMARK 465 LEU D 91 REMARK 465 THR D 92 REMARK 465 GLY D 93 REMARK 465 VAL E 1 REMARK 465 GLY E 2 REMARK 465 SER E 3 REMARK 465 GLU E 4 REMARK 465 VAL E 5 REMARK 465 SER E 6 REMARK 465 MET E 73 REMARK 465 ILE E 74 REMARK 465 GLN E 75 REMARK 465 THR E 76 REMARK 465 LYS E 77 REMARK 465 PRO E 78 REMARK 465 THR E 79 REMARK 465 GLY E 80 REMARK 465 THR E 81 REMARK 465 GLN E 82 REMARK 465 GLN E 83 REMARK 465 SER E 84 REMARK 465 THR E 85 REMARK 465 ASN E 86 REMARK 465 THR E 87 REMARK 465 ALA E 88 REMARK 465 VAL E 89 REMARK 465 THR E 90 REMARK 465 LEU E 91 REMARK 465 THR E 92 REMARK 465 GLY E 93 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 27 95.23 -52.21 REMARK 500 ALA A 40 -119.98 -134.40 REMARK 500 THR A 42 41.24 -85.75 REMARK 500 LYS A 57 -78.39 -86.69 REMARK 500 ASP A 103 -145.70 -86.36 REMARK 500 GLU A 121 -76.34 -65.56 REMARK 500 PHE A 146 151.68 179.70 REMARK 500 TYR A 150 45.16 -142.67 REMARK 500 SER A 202 136.37 -32.41 REMARK 500 CYS A 218 48.44 -106.69 REMARK 500 ASP A 233 -0.57 -57.79 REMARK 500 CYS A 235 68.91 -117.33 REMARK 500 THR A 236 -159.60 -117.99 REMARK 500 PHE A 250 -169.60 54.86 REMARK 500 THR A 304 99.50 -18.02 REMARK 500 HIS A 305 136.84 -33.40 REMARK 500 GLU A 306 -169.58 -110.31 REMARK 500 PRO A 311 25.36 -54.87 REMARK 500 SER A 312 105.87 -54.80 REMARK 500 ASP A 326 32.14 72.47 REMARK 500 SER A 334 45.57 -104.81 REMARK 500 GLU A 335 -73.76 -29.63 REMARK 500 LYS B 27 102.81 -43.02 REMARK 500 ALA B 40 -123.74 -112.04 REMARK 500 THR B 45 -71.32 -43.01 REMARK 500 ASP B 103 -156.10 -95.66 REMARK 500 THR B 132 -164.02 -103.88 REMARK 500 PHE B 146 146.44 -172.86 REMARK 500 MET B 151 138.29 -178.21 REMARK 500 ILE B 156 147.41 -175.71 REMARK 500 ASP B 164 -170.66 -170.68 REMARK 500 SER B 202 141.00 -34.40 REMARK 500 CYS B 218 33.10 -99.64 REMARK 500 SER B 303 -0.77 -58.46 REMARK 500 GLU B 335 -86.28 -58.61 REMARK 500 SER D 22 30.06 -81.16 REMARK 500 ARG D 23 1.20 -155.57 REMARK 500 THR D 26 -167.45 -125.09 REMARK 500 THR D 28 132.43 -174.32 REMARK 500 SER D 33 -75.23 -69.15 REMARK 500 LEU D 45 134.24 1.41 REMARK 500 ARG E 70 43.13 -87.79 REMARK 500 ASN E 71 71.24 -155.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1MKF RELATED DB: PDB REMARK 900 VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE GAMMAHERPESVIRUS 68 REMARK 900 RELATED ID: 1ML0 RELATED DB: PDB REMARK 900 VIRAL CHEMOKINE BINDING PROTEIN M3 FROM MURINE GAMMAHERPESVIRUS68 REMARK 900 IN COMPLEX WITH THE P8A VARIANT OF CC- CHEMOKINE MCP-1 REMARK 900 RELATED ID: 2NZ1 RELATED DB: PDB DBREF 2NYZ A 1 382 UNP O41925 O41925_MHV68 25 406 DBREF 2NYZ B 1 382 UNP O41925 O41925_MHV68 25 406 DBREF 2NYZ D 1 93 UNP P47992 XCL1_HUMAN 22 114 DBREF 2NYZ E 1 93 UNP P47992 XCL1_HUMAN 22 114 SEQRES 1 A 382 LEU THR LEU GLY LEU ALA PRO ALA LEU SER THR HIS SER SEQRES 2 A 382 SER GLY VAL SER THR GLN SER VAL ASP LEU SER GLN ILE SEQRES 3 A 382 LYS ARG GLY ASP GLU ILE GLN ALA HIS CYS LEU THR PRO SEQRES 4 A 382 ALA GLU THR GLU VAL THR GLU CYS ALA GLY ILE LEU LYS SEQRES 5 A 382 ASP VAL LEU SER LYS ASN LEU HIS GLU LEU GLN GLY LEU SEQRES 6 A 382 CYS ASN VAL LYS ASN LYS MET GLY VAL PRO TRP VAL SER SEQRES 7 A 382 VAL GLU GLU LEU GLY GLN GLU ILE ILE THR GLY ARG LEU SEQRES 8 A 382 PRO PHE PRO SER VAL GLY GLY THR PRO VAL ASN ASP LEU SEQRES 9 A 382 VAL ARG VAL LEU VAL VAL ALA GLU SER ASN THR PRO GLU SEQRES 10 A 382 GLU THR PRO GLU GLU GLU PHE TYR ALA TYR VAL GLU LEU SEQRES 11 A 382 GLN THR GLU LEU TYR THR PHE GLY LEU SER ASP ASP ASN SEQRES 12 A 382 VAL VAL PHE THR SER ASP TYR MET THR VAL TRP MET ILE SEQRES 13 A 382 ASP ILE PRO LYS SER TYR VAL ASP VAL GLY MET LEU THR SEQRES 14 A 382 ARG ALA THR PHE LEU GLU GLN TRP PRO GLY ALA LYS VAL SEQRES 15 A 382 THR VAL MET ILE PRO TYR SER SER THR PHE THR TRP CYS SEQRES 16 A 382 GLY GLU LEU GLY ALA ILE SER GLU GLU SER ALA PRO GLN SEQRES 17 A 382 PRO SER LEU SER ALA ARG SER PRO VAL CYS LYS ASN SER SEQRES 18 A 382 ALA ARG TYR SER THR SER LYS PHE CYS GLU VAL ASP GLY SEQRES 19 A 382 CYS THR ALA GLU THR GLY MET GLU LYS MET SER LEU LEU SEQRES 20 A 382 THR PRO PHE GLY GLY PRO PRO GLN GLN ALA LYS MET ASN SEQRES 21 A 382 THR CYS PRO CYS TYR TYR LYS TYR SER VAL SER PRO LEU SEQRES 22 A 382 PRO ALA MET ASP HIS LEU ILE LEU ALA ASP LEU ALA GLY SEQRES 23 A 382 LEU ASP SER LEU THR SER PRO VAL TYR VAL MET ALA ALA SEQRES 24 A 382 TYR PHE ASP SER THR HIS GLU ASN PRO VAL ARG PRO SER SEQRES 25 A 382 SER LYS LEU TYR HIS CYS ALA LEU GLN MET THR SER HIS SEQRES 26 A 382 ASP GLY VAL TRP THR SER THR SER SER GLU GLN CYS PRO SEQRES 27 A 382 ILE ARG LEU VAL GLU GLY GLN SER GLN ASN VAL LEU GLN SEQRES 28 A 382 VAL ARG VAL ALA PRO THR SER MET PRO ASN LEU VAL GLY SEQRES 29 A 382 VAL SER LEU MET LEU GLU GLY GLN GLN TYR ARG LEU GLU SEQRES 30 A 382 TYR PHE GLY ASP HIS SEQRES 1 B 382 LEU THR LEU GLY LEU ALA PRO ALA LEU SER THR HIS SER SEQRES 2 B 382 SER GLY VAL SER THR GLN SER VAL ASP LEU SER GLN ILE SEQRES 3 B 382 LYS ARG GLY ASP GLU ILE GLN ALA HIS CYS LEU THR PRO SEQRES 4 B 382 ALA GLU THR GLU VAL THR GLU CYS ALA GLY ILE LEU LYS SEQRES 5 B 382 ASP VAL LEU SER LYS ASN LEU HIS GLU LEU GLN GLY LEU SEQRES 6 B 382 CYS ASN VAL LYS ASN LYS MET GLY VAL PRO TRP VAL SER SEQRES 7 B 382 VAL GLU GLU LEU GLY GLN GLU ILE ILE THR GLY ARG LEU SEQRES 8 B 382 PRO PHE PRO SER VAL GLY GLY THR PRO VAL ASN ASP LEU SEQRES 9 B 382 VAL ARG VAL LEU VAL VAL ALA GLU SER ASN THR PRO GLU SEQRES 10 B 382 GLU THR PRO GLU GLU GLU PHE TYR ALA TYR VAL GLU LEU SEQRES 11 B 382 GLN THR GLU LEU TYR THR PHE GLY LEU SER ASP ASP ASN SEQRES 12 B 382 VAL VAL PHE THR SER ASP TYR MET THR VAL TRP MET ILE SEQRES 13 B 382 ASP ILE PRO LYS SER TYR VAL ASP VAL GLY MET LEU THR SEQRES 14 B 382 ARG ALA THR PHE LEU GLU GLN TRP PRO GLY ALA LYS VAL SEQRES 15 B 382 THR VAL MET ILE PRO TYR SER SER THR PHE THR TRP CYS SEQRES 16 B 382 GLY GLU LEU GLY ALA ILE SER GLU GLU SER ALA PRO GLN SEQRES 17 B 382 PRO SER LEU SER ALA ARG SER PRO VAL CYS LYS ASN SER SEQRES 18 B 382 ALA ARG TYR SER THR SER LYS PHE CYS GLU VAL ASP GLY SEQRES 19 B 382 CYS THR ALA GLU THR GLY MET GLU LYS MET SER LEU LEU SEQRES 20 B 382 THR PRO PHE GLY GLY PRO PRO GLN GLN ALA LYS MET ASN SEQRES 21 B 382 THR CYS PRO CYS TYR TYR LYS TYR SER VAL SER PRO LEU SEQRES 22 B 382 PRO ALA MET ASP HIS LEU ILE LEU ALA ASP LEU ALA GLY SEQRES 23 B 382 LEU ASP SER LEU THR SER PRO VAL TYR VAL MET ALA ALA SEQRES 24 B 382 TYR PHE ASP SER THR HIS GLU ASN PRO VAL ARG PRO SER SEQRES 25 B 382 SER LYS LEU TYR HIS CYS ALA LEU GLN MET THR SER HIS SEQRES 26 B 382 ASP GLY VAL TRP THR SER THR SER SER GLU GLN CYS PRO SEQRES 27 B 382 ILE ARG LEU VAL GLU GLY GLN SER GLN ASN VAL LEU GLN SEQRES 28 B 382 VAL ARG VAL ALA PRO THR SER MET PRO ASN LEU VAL GLY SEQRES 29 B 382 VAL SER LEU MET LEU GLU GLY GLN GLN TYR ARG LEU GLU SEQRES 30 B 382 TYR PHE GLY ASP HIS SEQRES 1 D 93 VAL GLY SER GLU VAL SER ASP LYS ARG THR CYS VAL SER SEQRES 2 D 93 LEU THR THR GLN ARG LEU PRO VAL SER ARG ILE LYS THR SEQRES 3 D 93 TYR THR ILE THR GLU GLY SER LEU ARG ALA VAL ILE PHE SEQRES 4 D 93 ILE THR LYS ARG GLY LEU LYS VAL CYS ALA ASP PRO GLN SEQRES 5 D 93 ALA THR TRP VAL ARG ASP VAL VAL ARG SER MET ASP ARG SEQRES 6 D 93 LYS SER ASN THR ARG ASN ASN MET ILE GLN THR LYS PRO SEQRES 7 D 93 THR GLY THR GLN GLN SER THR ASN THR ALA VAL THR LEU SEQRES 8 D 93 THR GLY SEQRES 1 E 93 VAL GLY SER GLU VAL SER ASP LYS ARG THR CYS VAL SER SEQRES 2 E 93 LEU THR THR GLN ARG LEU PRO VAL SER ARG ILE LYS THR SEQRES 3 E 93 TYR THR ILE THR GLU GLY SER LEU ARG ALA VAL ILE PHE SEQRES 4 E 93 ILE THR LYS ARG GLY LEU LYS VAL CYS ALA ASP PRO GLN SEQRES 5 E 93 ALA THR TRP VAL ARG ASP VAL VAL ARG SER MET ASP ARG SEQRES 6 E 93 LYS SER ASN THR ARG ASN ASN MET ILE GLN THR LYS PRO SEQRES 7 E 93 THR GLY THR GLN GLN SER THR ASN THR ALA VAL THR LEU SEQRES 8 E 93 THR GLY FORMUL 5 HOH *194(H2 O) HELIX 1 1 ASP A 22 ILE A 26 5 5 HELIX 2 2 ARG A 28 CYS A 36 1 9 HELIX 3 3 VAL A 44 ASN A 58 1 15 HELIX 4 4 HIS A 60 CYS A 66 5 7 HELIX 5 5 GLU A 80 GLY A 83 5 4 HELIX 6 6 SER A 140 ASP A 142 5 3 HELIX 7 7 SER A 161 VAL A 163 5 3 HELIX 8 8 ASN A 220 THR A 226 5 7 HELIX 9 9 CYS A 262 SER A 269 1 8 HELIX 10 10 PRO A 356 MET A 359 5 4 HELIX 11 11 ASP B 22 ILE B 26 5 5 HELIX 12 12 ARG B 28 LEU B 37 1 10 HELIX 13 13 VAL B 44 ASN B 58 1 15 HELIX 14 14 HIS B 60 CYS B 66 5 7 HELIX 15 15 GLU B 80 GLY B 83 5 4 HELIX 16 16 SER B 140 ASP B 142 5 3 HELIX 17 17 SER B 161 VAL B 163 5 3 HELIX 18 18 ASN B 220 SER B 225 5 6 HELIX 19 19 THR B 226 LYS B 228 5 3 HELIX 20 20 PHE B 229 GLY B 234 1 6 HELIX 21 21 CYS B 262 SER B 269 1 8 HELIX 22 22 LEU B 287 LEU B 290 5 4 HELIX 23 23 PRO B 356 PRO B 360 5 5 HELIX 24 24 PRO D 20 ILE D 24 5 5 HELIX 25 25 ALA D 53 SER D 62 1 10 HELIX 26 26 MET D 63 SER D 67 5 5 HELIX 27 27 PRO E 20 SER E 22 5 3 HELIX 28 28 ALA E 53 ARG E 65 1 13 SHEET 1 A 7 GLY A 15 THR A 18 0 SHEET 2 A 7 VAL A 68 PRO A 75 -1 O LYS A 69 N SER A 17 SHEET 3 A 7 THR A 193 ILE A 201 1 O CYS A 195 N VAL A 68 SHEET 4 A 7 LYS A 181 PRO A 187 -1 N VAL A 182 O LEU A 198 SHEET 5 A 7 LEU A 104 GLU A 112 -1 N VAL A 110 O THR A 183 SHEET 6 A 7 MET A 151 PRO A 159 -1 O ILE A 156 N VAL A 107 SHEET 7 A 7 VAL A 144 SER A 148 -1 N VAL A 145 O VAL A 153 SHEET 1 B 5 VAL A 77 VAL A 79 0 SHEET 2 B 5 GLN A 84 GLY A 89 -1 O ILE A 86 N VAL A 77 SHEET 3 B 5 LEU A 168 PHE A 173 -1 O ALA A 171 N ILE A 87 SHEET 4 B 5 ALA A 126 GLN A 131 -1 N GLN A 131 O LEU A 168 SHEET 5 B 5 THR A 136 LEU A 139 -1 O PHE A 137 N LEU A 130 SHEET 1 C 6 SER A 212 PRO A 216 0 SHEET 2 C 6 GLN A 372 GLU A 377 1 O ARG A 375 N ALA A 213 SHEET 3 C 6 LEU A 362 LEU A 369 -1 N VAL A 365 O LEU A 376 SHEET 4 C 6 VAL A 294 PHE A 301 -1 N ALA A 299 O GLY A 364 SHEET 5 C 6 LEU A 315 HIS A 325 -1 O TYR A 316 N TYR A 300 SHEET 6 C 6 VAL A 328 SER A 331 -1 O THR A 330 N THR A 323 SHEET 1 D 5 MET A 244 LEU A 246 0 SHEET 2 D 5 GLN A 256 ASN A 260 -1 O MET A 259 N SER A 245 SHEET 3 D 5 LEU A 279 ALA A 285 -1 O ALA A 285 N GLN A 256 SHEET 4 D 5 VAL A 349 VAL A 354 -1 O VAL A 352 N ALA A 282 SHEET 5 D 5 ILE A 339 GLU A 343 -1 N ARG A 340 O ARG A 353 SHEET 1 E 2 LEU A 273 PRO A 274 0 SHEET 2 E 2 ARG D 9 THR D 10 -1 O THR D 10 N LEU A 273 SHEET 1 F 7 GLY B 15 THR B 18 0 SHEET 2 F 7 VAL B 68 PRO B 75 -1 O LYS B 69 N SER B 17 SHEET 3 F 7 PHE B 192 ILE B 201 1 O GLY B 199 N MET B 72 SHEET 4 F 7 LYS B 181 SER B 189 -1 N ILE B 186 O TRP B 194 SHEET 5 F 7 LEU B 104 GLU B 112 -1 N GLU B 112 O LYS B 181 SHEET 6 F 7 MET B 151 PRO B 159 -1 O ILE B 156 N VAL B 107 SHEET 7 F 7 VAL B 144 SER B 148 -1 N VAL B 145 O VAL B 153 SHEET 1 G 5 VAL B 77 VAL B 79 0 SHEET 2 G 5 GLN B 84 ARG B 90 -1 O ILE B 86 N VAL B 77 SHEET 3 G 5 LEU B 168 PHE B 173 -1 O PHE B 173 N GLU B 85 SHEET 4 G 5 ALA B 126 GLN B 131 -1 N TYR B 127 O THR B 172 SHEET 5 G 5 THR B 136 GLY B 138 -1 O PHE B 137 N LEU B 130 SHEET 1 H 6 SER B 212 PRO B 216 0 SHEET 2 H 6 GLN B 372 GLU B 377 1 O ARG B 375 N ALA B 213 SHEET 3 H 6 LEU B 362 LEU B 369 -1 N VAL B 365 O LEU B 376 SHEET 4 H 6 VAL B 294 PHE B 301 -1 N ALA B 299 O GLY B 364 SHEET 5 H 6 LEU B 315 HIS B 325 -1 O TYR B 316 N TYR B 300 SHEET 6 H 6 VAL B 328 THR B 332 -1 O VAL B 328 N HIS B 325 SHEET 1 I 5 MET B 244 LEU B 246 0 SHEET 2 I 5 ALA B 257 ASN B 260 -1 O MET B 259 N SER B 245 SHEET 3 I 5 LEU B 279 ALA B 285 -1 O ASP B 283 N LYS B 258 SHEET 4 I 5 VAL B 349 VAL B 354 -1 O VAL B 354 N LEU B 279 SHEET 5 I 5 ILE B 339 GLU B 343 -1 N ARG B 340 O ARG B 353 SHEET 1 J 2 LEU B 273 PRO B 274 0 SHEET 2 J 2 ARG E 9 THR E 10 -1 O THR E 10 N LEU B 273 SHEET 1 K 3 ILE D 29 THR D 30 0 SHEET 2 K 3 ALA D 36 THR D 41 -1 O ALA D 36 N THR D 30 SHEET 3 K 3 GLY D 44 ALA D 49 -1 O LEU D 45 N THR D 41 SHEET 1 L 3 ILE E 24 THR E 28 0 SHEET 2 L 3 VAL E 37 THR E 41 -1 O ILE E 40 N LYS E 25 SHEET 3 L 3 LYS E 46 ALA E 49 -1 O VAL E 47 N PHE E 39 SSBOND 1 CYS A 36 CYS A 47 1555 1555 2.04 SSBOND 2 CYS A 66 CYS A 195 1555 1555 2.04 SSBOND 3 CYS A 218 CYS A 264 1555 1555 2.04 SSBOND 4 CYS A 235 CYS A 262 1555 1555 2.04 SSBOND 5 CYS A 318 CYS A 337 1555 1555 2.05 SSBOND 6 CYS B 36 CYS B 47 1555 1555 2.03 SSBOND 7 CYS B 66 CYS B 195 1555 1555 2.04 SSBOND 8 CYS B 218 CYS B 264 1555 1555 2.03 SSBOND 9 CYS B 235 CYS B 262 1555 1555 2.04 SSBOND 10 CYS B 318 CYS B 337 1555 1555 2.04 SSBOND 11 CYS D 11 CYS D 48 1555 1555 2.04 SSBOND 12 CYS E 11 CYS E 48 1555 1555 2.03 CRYST1 84.370 103.190 290.940 90.00 90.00 90.00 I 21 21 21 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011853 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009691 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003437 0.00000