HEADER SIGNALING PROTEIN,CELL CYCLE 22-NOV-06 2NZ8 TITLE N-TERMINAL DHPH CASSETTE OF TRIO IN COMPLEX WITH NUCLEOTIDE-FREE RAC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1 ISOFORM RAC1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SOLUBLE PART (RESIDUES 1-177); COMPND 5 SYNONYM: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1; P21-RAC1; RAS- COMPND 6 LIKE PROTEIN TC25; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TRIPLE FUNCTIONAL DOMAIN PROTEIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: N-TERMINAL DH/PH CASSETTE (RESIDUES 1226-1535); COMPND 12 SYNONYM: PTPRF-INTERACTING PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: TRIO; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTA KEYWDS TRIO; RAC1; DBL-FAMILY GEF; RHO-FAMILY GTPASE; DH/PH CASSETTE, KEYWDS 2 SIGNALING PROTEIN, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.CHHATRIWALA,L.BETTS,D.K.WORTHYLAKE,J.SONDEK REVDAT 5 30-AUG-23 2NZ8 1 SEQADV REVDAT 4 18-OCT-17 2NZ8 1 REMARK REVDAT 3 24-FEB-09 2NZ8 1 VERSN REVDAT 2 05-JUN-07 2NZ8 1 JRNL REVDAT 1 10-APR-07 2NZ8 0 JRNL AUTH M.K.CHHATRIWALA,L.BETTS,D.K.WORTHYLAKE,J.SONDEK JRNL TITL THE DH AND PH DOMAINS OF TRIO COORDINATELY ENGAGE RHO JRNL TITL 2 GTPASES FOR THEIR EFFICIENT ACTIVATION JRNL REF J.MOL.BIOL. V. 368 1307 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17391702 JRNL DOI 10.1016/J.JMB.2007.02.060 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 38900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1968 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2718 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3663 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.195 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.565 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3737 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5043 ; 1.138 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ; 5.078 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;34.698 ;24.824 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 696 ;15.149 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.585 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 564 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2767 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1729 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2539 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 251 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.094 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2359 ; 0.520 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3679 ; 0.848 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1584 ; 1.260 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1364 ; 1.913 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 48.0850 32.1290 -7.1214 REMARK 3 T TENSOR REMARK 3 T11: -0.1328 T22: -0.1902 REMARK 3 T33: -0.1971 T12: -0.0171 REMARK 3 T13: -0.0041 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.7443 L22: 2.4427 REMARK 3 L33: 4.6849 L12: 0.1444 REMARK 3 L13: -0.8049 L23: 0.2378 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: 0.0714 S13: -0.0816 REMARK 3 S21: -0.3355 S22: 0.0723 S23: -0.1213 REMARK 3 S31: 0.3195 S32: 0.0851 S33: -0.0227 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1231 B 1411 REMARK 3 ORIGIN FOR THE GROUP (A): 44.3108 41.1008 15.5037 REMARK 3 T TENSOR REMARK 3 T11: -0.1602 T22: -0.1770 REMARK 3 T33: -0.2421 T12: -0.0394 REMARK 3 T13: 0.0117 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 2.5060 L22: 3.5037 REMARK 3 L33: 1.8732 L12: -0.0472 REMARK 3 L13: -0.2673 L23: -0.2385 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: -0.1939 S13: 0.0513 REMARK 3 S21: 0.3334 S22: 0.0504 S23: -0.0188 REMARK 3 S31: 0.0679 S32: 0.0635 S33: -0.0531 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1412 B 1417 REMARK 3 RESIDUE RANGE : B 1423 B 1434 REMARK 3 RESIDUE RANGE : B 1449 B 1497 REMARK 3 RESIDUE RANGE : B 1505 B 1535 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2525 11.8642 14.9497 REMARK 3 T TENSOR REMARK 3 T11: 0.2877 T22: -0.0272 REMARK 3 T33: 1.2075 T12: -0.2386 REMARK 3 T13: -0.6478 T23: 0.3116 REMARK 3 L TENSOR REMARK 3 L11: 30.0993 L22: 12.5573 REMARK 3 L33: 14.3880 L12: -1.8593 REMARK 3 L13: 13.3474 L23: -1.6695 REMARK 3 S TENSOR REMARK 3 S11: 2.9268 S12: -1.1897 S13: -5.8947 REMARK 3 S21: 0.3162 S22: -0.0338 S23: -0.0182 REMARK 3 S31: 2.5485 S32: -0.6843 S33: -2.8930 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2000 B 2241 REMARK 3 ORIGIN FOR THE GROUP (A): 41.9646 37.1742 4.9849 REMARK 3 T TENSOR REMARK 3 T11: -0.0604 T22: -0.0833 REMARK 3 T33: -0.0568 T12: -0.0114 REMARK 3 T13: -0.0088 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 1.1617 L22: 2.3093 REMARK 3 L33: 2.3013 L12: -0.2572 REMARK 3 L13: -0.4692 L23: 0.5297 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: -0.0112 S13: 0.0247 REMARK 3 S21: -0.0661 S22: 0.0337 S23: 0.1927 REMARK 3 S31: 0.0196 S32: -0.0923 S33: -0.0258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NZ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0712 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI (220) REMARK 200 CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39416 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52400 REMARK 200 FOR SHELL : 3.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: RESIDUES 1231-1390 OF PDB ENTRY 1NTY AND RESIDUES REMARK 200 1-177 OF PDB ENTRY 1FOE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE PH 5.5 TO REMARK 280 6.5, 14 TO 18% (W/V) PEG 8000, AND 300-500 MM CALCIUM ACETATE, REMARK 280 PH 6.0, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.74600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.27900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.74600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.27900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE IS ONE BIOLOGICAL UNIT IN EACH ASSYMETRIC UNIT REMARK 300 (COMPLEX BETWEEN RAC1 AND TRIO DH/PH) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2175 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2221 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 1223 REMARK 465 ALA B 1224 REMARK 465 MET B 1225 REMARK 465 GLU B 1226 REMARK 465 LYS B 1227 REMARK 465 ARG B 1228 REMARK 465 LYS B 1229 REMARK 465 SER B 1230 REMARK 465 ASP B 1418 REMARK 465 GLU B 1419 REMARK 465 ASN B 1420 REMARK 465 ILE B 1421 REMARK 465 GLU B 1422 REMARK 465 VAL B 1435 REMARK 465 TRP B 1436 REMARK 465 ASP B 1437 REMARK 465 PRO B 1438 REMARK 465 LYS B 1439 REMARK 465 THR B 1440 REMARK 465 LEU B 1441 REMARK 465 ILE B 1442 REMARK 465 ARG B 1443 REMARK 465 LYS B 1444 REMARK 465 GLY B 1445 REMARK 465 ARG B 1446 REMARK 465 GLU B 1447 REMARK 465 ARG B 1448 REMARK 465 LEU B 1498 REMARK 465 TRP B 1499 REMARK 465 VAL B 1500 REMARK 465 GLY B 1501 REMARK 465 ARG B 1502 REMARK 465 THR B 1503 REMARK 465 PRO B 1504 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 68 O HOH A 2133 2.04 REMARK 500 OD2 ASP A 38 O HOH A 2199 2.06 REMARK 500 OD1 ASP B 1251 O HOH B 2156 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN B1434 C GLN B1434 O 0.132 REMARK 500 GLU B1482 CD GLU B1482 OE1 0.144 REMARK 500 GLU B1482 CD GLU B1482 OE2 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 29 94.05 -66.72 REMARK 500 LYS A 96 -58.66 -127.02 REMARK 500 THR B1258 -80.44 -111.94 REMARK 500 ASN B1284 35.50 -96.34 REMARK 500 GLU B1390 -0.18 82.84 REMARK 500 SER B1481 -69.90 -164.21 REMARK 500 VAL B1489 -107.31 -117.93 REMARK 500 PRO B1493 172.81 -56.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 2NZ8 A 1 177 UNP P63000 RAC1_HUMAN 1 177 DBREF 2NZ8 B 1226 1535 UNP O75962 TRIO_HUMAN 1226 1535 SEQADV 2NZ8 GLY B 1223 UNP O75962 CLONING ARTIFACT SEQADV 2NZ8 ALA B 1224 UNP O75962 CLONING ARTIFACT SEQADV 2NZ8 MET B 1225 UNP O75962 INITIATING METHIONINE SEQRES 1 A 177 MET GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY ALA SEQRES 2 A 177 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 A 177 ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP ASN SEQRES 4 A 177 TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL ASN SEQRES 5 A 177 LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 A 177 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 A 177 LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE GLU SEQRES 8 A 177 ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS HIS SEQRES 9 A 177 CYS PRO ASN THR PRO ILE ILE LEU VAL GLY THR LYS LEU SEQRES 10 A 177 ASP LEU ARG ASP ASP LYS ASP THR ILE GLU LYS LEU LYS SEQRES 11 A 177 GLU LYS LYS LEU THR PRO ILE THR TYR PRO GLN GLY LEU SEQRES 12 A 177 ALA MET ALA LYS GLU ILE GLY ALA VAL LYS TYR LEU GLU SEQRES 13 A 177 CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL PHE SEQRES 14 A 177 ASP GLU ALA ILE ARG ALA VAL LEU SEQRES 1 B 313 GLY ALA MET GLU LYS ARG LYS SER ALA ARG ARG LYS GLU SEQRES 2 B 313 PHE ILE MET ALA GLU LEU ILE GLN THR GLU LYS ALA TYR SEQRES 3 B 313 VAL ARG ASP LEU ARG GLU CYS MET ASP THR TYR LEU TRP SEQRES 4 B 313 GLU MET THR SER GLY VAL GLU GLU ILE PRO PRO GLY ILE SEQRES 5 B 313 VAL ASN LYS GLU LEU ILE ILE PHE GLY ASN MET GLN GLU SEQRES 6 B 313 ILE TYR GLU PHE HIS ASN ASN ILE PHE LEU LYS GLU LEU SEQRES 7 B 313 GLU LYS TYR GLU GLN LEU PRO GLU ASP VAL GLY HIS CYS SEQRES 8 B 313 PHE VAL THR TRP ALA ASP LYS PHE GLN MET TYR VAL THR SEQRES 9 B 313 TYR CYS LYS ASN LYS PRO ASP SER THR GLN LEU ILE LEU SEQRES 10 B 313 GLU HIS ALA GLY SER TYR PHE ASP GLU ILE GLN GLN ARG SEQRES 11 B 313 HIS GLY LEU ALA ASN SER ILE SER SER TYR LEU ILE LYS SEQRES 12 B 313 PRO VAL GLN ARG ILE THR LYS TYR GLN LEU LEU LEU LYS SEQRES 13 B 313 GLU LEU LEU THR CYS CYS GLU GLU GLY LYS GLY GLU ILE SEQRES 14 B 313 LYS ASP GLY LEU GLU VAL MET LEU SER VAL PRO LYS ARG SEQRES 15 B 313 ALA ASN ASP ALA MET HIS LEU SER MET LEU GLU GLY PHE SEQRES 16 B 313 ASP GLU ASN ILE GLU SER GLN GLY GLU LEU ILE LEU GLN SEQRES 17 B 313 GLU SER PHE GLN VAL TRP ASP PRO LYS THR LEU ILE ARG SEQRES 18 B 313 LYS GLY ARG GLU ARG HIS LEU PHE LEU PHE GLU MET SER SEQRES 19 B 313 LEU VAL PHE SER LYS GLU VAL LYS ASP SER SER GLY ARG SEQRES 20 B 313 SER LYS TYR LEU TYR LYS SER LYS LEU PHE THR SER GLU SEQRES 21 B 313 LEU GLY VAL THR GLU HIS VAL GLU GLY ASP PRO CYS LYS SEQRES 22 B 313 PHE ALA LEU TRP VAL GLY ARG THR PRO THR SER ASP ASN SEQRES 23 B 313 LYS ILE VAL LEU LYS ALA SER SER ILE GLU ASN LYS GLN SEQRES 24 B 313 ASP TRP ILE LYS HIS ILE ARG GLU VAL ILE GLN GLU ARG SEQRES 25 B 313 THR FORMUL 3 HOH *242(H2 O) HELIX 1 1 GLY A 12 VAL A 14 5 3 HELIX 2 2 GLY A 15 THR A 25 1 11 HELIX 3 3 LEU A 67 TYR A 72 5 6 HELIX 4 4 SER A 86 LYS A 96 1 11 HELIX 5 5 LYS A 96 CYS A 105 1 10 HELIX 6 6 LYS A 116 ARG A 120 5 5 HELIX 7 7 ASP A 122 GLU A 131 1 10 HELIX 8 8 THR A 138 GLY A 150 1 13 HELIX 9 9 GLY A 164 LEU A 177 1 14 HELIX 10 10 ALA B 1231 THR B 1258 1 28 HELIX 11 11 THR B 1258 GLY B 1266 1 9 HELIX 12 12 LYS B 1277 GLY B 1283 1 7 HELIX 13 13 ASN B 1284 ILE B 1295 1 12 HELIX 14 14 ILE B 1295 TYR B 1303 1 9 HELIX 15 15 LEU B 1306 ASP B 1309 5 4 HELIX 16 16 VAL B 1310 TRP B 1317 1 8 HELIX 17 17 ALA B 1318 PHE B 1321 5 4 HELIX 18 18 GLN B 1322 ALA B 1342 1 21 HELIX 19 19 SER B 1344 GLY B 1354 1 11 HELIX 20 20 SER B 1358 CYS B 1383 1 26 HELIX 21 21 GLU B 1390 SER B 1412 1 23 HELIX 22 22 SER B 1516 GLU B 1533 1 18 SHEET 1 A 6 TYR A 40 VAL A 46 0 SHEET 2 A 6 LYS A 49 TRP A 56 -1 O VAL A 51 N VAL A 44 SHEET 3 A 6 ALA A 3 GLY A 10 1 N ILE A 4 O ASN A 52 SHEET 4 A 6 VAL A 77 SER A 83 1 O LEU A 79 N VAL A 9 SHEET 5 A 6 ILE A 110 THR A 115 1 O THR A 115 N PHE A 82 SHEET 6 A 6 LYS A 153 GLU A 156 1 O LEU A 155 N GLY A 114 SHEET 1 B 5 LEU B1414 GLU B1415 0 SHEET 2 B 5 SER B1470 LEU B1478 1 O TYR B1472 N GLU B1415 SHEET 3 B 5 LEU B1457 LYS B1464 -1 N LYS B1461 O LEU B1473 SHEET 4 B 5 LEU B1450 PHE B1453 -1 N PHE B1451 O VAL B1458 SHEET 5 B 5 LEU B1427 GLU B1431 -1 N GLU B1431 O LEU B1450 SHEET 1 C 2 LYS B1495 PHE B1496 0 SHEET 2 C 2 LEU B1512 LYS B1513 -1 O LEU B1512 N PHE B1496 CISPEP 1 SER B 1423 GLN B 1424 0 0.68 CRYST1 97.492 108.558 53.416 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010257 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018721 0.00000