HEADER SIGNALING PROTEIN,CELL CYCLE 22-NOV-06 2NZ8 TITLE N-TERMINAL DHPH CASSETTE OF TRIO IN COMPLEX WITH NUCLEOTIDE-FREE RAC1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1 ISOFORM RAC1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: SOLUBLE PART (RESIDUES 1-177); COMPND 5 SYNONYM: RAS-RELATED C3 BOTULINUM TOXIN SUBSTRATE 1; P21-RAC1; RAS- COMPND 6 LIKE PROTEIN TC25; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: TRIPLE FUNCTIONAL DOMAIN PROTEIN; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: N-TERMINAL DH/PH CASSETTE (RESIDUES 1226-1535); COMPND 12 SYNONYM: PTPRF-INTERACTING PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAC1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: TRIO; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 17 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PPROEX-HTA KEYWDS TRIO; RAC1; DBL-FAMILY GEF; RHO-FAMILY GTPASE; DH/PH CASSETTE, KEYWDS 2 SIGNALING PROTEIN, CELL CYCLE EXPDTA X-RAY DIFFRACTION AUTHOR M.K.CHHATRIWALA,L.BETTS,D.K.WORTHYLAKE,J.SONDEK REVDAT 5 30-AUG-23 2NZ8 1 SEQADV REVDAT 4 18-OCT-17 2NZ8 1 REMARK REVDAT 3 24-FEB-09 2NZ8 1 VERSN REVDAT 2 05-JUN-07 2NZ8 1 JRNL REVDAT 1 10-APR-07 2NZ8 0 JRNL AUTH M.K.CHHATRIWALA,L.BETTS,D.K.WORTHYLAKE,J.SONDEK JRNL TITL THE DH AND PH DOMAINS OF TRIO COORDINATELY ENGAGE RHO JRNL TITL 2 GTPASES FOR THEIR EFFICIENT ACTIVATION JRNL REF J.MOL.BIOL. V. 368 1307 2007 JRNL REFN ISSN 0022-2836 JRNL PMID 17391702 JRNL DOI 10.1016/J.JMB.2007.02.060 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.41 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 38900 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.225 REMARK 3 R VALUE (WORKING SET) : 0.223 REMARK 3 FREE R VALUE : 0.249 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1968 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2718 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.89 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 129 REMARK 3 BIN FREE R VALUE : 0.3070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3663 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 242 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.24 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.01000 REMARK 3 B22 (A**2) : 0.20000 REMARK 3 B33 (A**2) : -0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.195 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.165 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.565 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.939 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.917 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3737 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5043 ; 1.138 ; 1.973 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 451 ; 5.078 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 170 ;34.698 ;24.824 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 696 ;15.149 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 17 ;16.585 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 564 ; 0.083 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2767 ; 0.003 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1729 ; 0.190 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2539 ; 0.300 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 251 ; 0.148 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 42 ; 0.200 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 14 ; 0.094 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2359 ; 0.520 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3679 ; 0.848 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1584 ; 1.260 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1364 ; 1.913 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 1 A 177 REMARK 3 ORIGIN FOR THE GROUP (A): 48.0850 32.1290 -7.1214 REMARK 3 T TENSOR REMARK 3 T11: -0.1328 T22: -0.1902 REMARK 3 T33: -0.1971 T12: -0.0171 REMARK 3 T13: -0.0041 T23: 0.0069 REMARK 3 L TENSOR REMARK 3 L11: 1.7443 L22: 2.4427 REMARK 3 L33: 4.6849 L12: 0.1444 REMARK 3 L13: -0.8049 L23: 0.2378 REMARK 3 S TENSOR REMARK 3 S11: -0.0496 S12: 0.0714 S13: -0.0816 REMARK 3 S21: -0.3355 S22: 0.0723 S23: -0.1213 REMARK 3 S31: 0.3195 S32: 0.0851 S33: -0.0227 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1231 B 1411 REMARK 3 ORIGIN FOR THE GROUP (A): 44.3108 41.1008 15.5037 REMARK 3 T TENSOR REMARK 3 T11: -0.1602 T22: -0.1770 REMARK 3 T33: -0.2421 T12: -0.0394 REMARK 3 T13: 0.0117 T23: 0.0000 REMARK 3 L TENSOR REMARK 3 L11: 2.5060 L22: 3.5037 REMARK 3 L33: 1.8732 L12: -0.0472 REMARK 3 L13: -0.2673 L23: -0.2385 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: -0.1939 S13: 0.0513 REMARK 3 S21: 0.3334 S22: 0.0504 S23: -0.0188 REMARK 3 S31: 0.0679 S32: 0.0635 S33: -0.0531 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 4 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 1412 B 1417 REMARK 3 RESIDUE RANGE : B 1423 B 1434 REMARK 3 RESIDUE RANGE : B 1449 B 1497 REMARK 3 RESIDUE RANGE : B 1505 B 1535 REMARK 3 ORIGIN FOR THE GROUP (A): 32.2525 11.8642 14.9497 REMARK 3 T TENSOR REMARK 3 T11: 0.2877 T22: -0.0272 REMARK 3 T33: 1.2075 T12: -0.2386 REMARK 3 T13: -0.6478 T23: 0.3116 REMARK 3 L TENSOR REMARK 3 L11: 30.0993 L22: 12.5573 REMARK 3 L33: 14.3880 L12: -1.8593 REMARK 3 L13: 13.3474 L23: -1.6695 REMARK 3 S TENSOR REMARK 3 S11: 2.9268 S12: -1.1897 S13: -5.8947 REMARK 3 S21: 0.3162 S22: -0.0338 S23: -0.0182 REMARK 3 S31: 2.5485 S32: -0.6843 S33: -2.8930 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2000 B 2241 REMARK 3 ORIGIN FOR THE GROUP (A): 41.9646 37.1742 4.9849 REMARK 3 T TENSOR REMARK 3 T11: -0.0604 T22: -0.0833 REMARK 3 T33: -0.0568 T12: -0.0114 REMARK 3 T13: -0.0088 T23: 0.0335 REMARK 3 L TENSOR REMARK 3 L11: 1.1617 L22: 2.3093 REMARK 3 L33: 2.3013 L12: -0.2572 REMARK 3 L13: -0.4692 L23: 0.5297 REMARK 3 S TENSOR REMARK 3 S11: -0.0079 S12: -0.0112 S13: 0.0247 REMARK 3 S21: -0.0661 S22: 0.0337 S23: 0.1927 REMARK 3 S31: 0.0196 S32: -0.0923 S33: -0.0258 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2NZ8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040486. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-OCT-04 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0712 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI (220) REMARK 200 CRYOGENICALLY COOLED REMARK 200 MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 39416 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 5.400 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.06900 REMARK 200 FOR THE DATA SET : 15.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.52400 REMARK 200 FOR SHELL : 3.530 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: RESIDUES 1231-1390 OF PDB ENTRY 1NTY AND RESIDUES REMARK 200 1-177 OF PDB ENTRY 1FOE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.01 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM SODIUM CACODYLATE PH 5.5 TO REMARK 280 6.5, 14 TO 18% (W/V) PEG 8000, AND 300-500 MM CALCIUM ACETATE, REMARK 280 PH 6.0, VAPOR DIFFUSION, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 48.74600 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 54.27900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 48.74600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 54.27900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THERE IS ONE BIOLOGICAL UNIT IN EACH ASSYMETRIC UNIT REMARK 300 (COMPLEX BETWEEN RAC1 AND TRIO DH/PH) REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2590 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22980 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A2175 LIES ON A SPECIAL POSITION. REMARK 375 HOH B2221 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B 1223 REMARK 465 ALA B 1224 REMARK 465 MET B 1225 REMARK 465 GLU B 1226 REMARK 465 LYS B 1227 REMARK 465 ARG B 1228 REMARK 465 LYS B 1229 REMARK 465 SER B 1230 REMARK 465 ASP B 1418 REMARK 465 GLU B 1419 REMARK 465 ASN B 1420 REMARK 465 ILE B 1421 REMARK 465 GLU B 1422 REMARK 465 VAL B 1435 REMARK 465 TRP B 1436 REMARK 465 ASP B 1437 REMARK 465 PRO B 1438 REMARK 465 LYS B 1439 REMARK 465 THR B 1440 REMARK 465 LEU B 1441 REMARK 465 ILE B 1442 REMARK 465 ARG B 1443 REMARK 465 LYS B 1444 REMARK 465 GLY B 1445 REMARK 465 ARG B 1446 REMARK 465 GLU B 1447 REMARK 465 ARG B 1448 REMARK 465 LEU B 1498 REMARK 465 TRP B 1499 REMARK 465 VAL B 1500 REMARK 465 GLY B 1501 REMARK 465 ARG B 1502 REMARK 465 THR B 1503 REMARK 465 PRO B 1504 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 68 O HOH A 2133 2.04 REMARK 500 OD2 ASP A 38 O HOH A 2199 2.06 REMARK 500 OD1 ASP B 1251 O HOH B 2156 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLN B1434 C GLN B1434 O 0.132 REMARK 500 GLU B1482 CD GLU B1482 OE1 0.144 REMARK 500 GLU B1482 CD GLU B1482 OE2 0.144 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 29 94.05 -66.72 REMARK 500 LYS A 96 -58.66 -127.02 REMARK 500 THR B1258 -80.44 -111.94 REMARK 500 ASN B1284 35.50 -96.34 REMARK 500 GLU B1390 -0.18 82.84 REMARK 500 SER B1481 -69.90 -164.21 REMARK 500 VAL B1489 -107.31 -117.93 REMARK 500 PRO B1493 172.81 -56.48 REMARK 500 REMARK 500 REMARK: NULL DBREF 2NZ8 A 1 177 UNP P63000 RAC1_HUMAN 1 177 DBREF 2NZ8 B 1226 1535 UNP O75962 TRIO_HUMAN 1226 1535 SEQADV 2NZ8 GLY B 1223 UNP O75962 CLONING ARTIFACT SEQADV 2NZ8 ALA B 1224 UNP O75962 CLONING ARTIFACT SEQADV 2NZ8 MET B 1225 UNP O75962 INITIATING METHIONINE SEQRES 1 A 177 MET GLN ALA ILE LYS CYS VAL VAL VAL GLY ASP GLY ALA SEQRES 2 A 177 VAL GLY LYS THR CYS LEU LEU ILE SER TYR THR THR ASN SEQRES 3 A 177 ALA PHE PRO GLY GLU TYR ILE PRO THR VAL PHE ASP ASN SEQRES 4 A 177 TYR SER ALA ASN VAL MET VAL ASP GLY LYS PRO VAL ASN SEQRES 5 A 177 LEU GLY LEU TRP ASP THR ALA GLY GLN GLU ASP TYR ASP SEQRES 6 A 177 ARG LEU ARG PRO LEU SER TYR PRO GLN THR ASP VAL PHE SEQRES 7 A 177 LEU ILE CYS PHE SER LEU VAL SER PRO ALA SER PHE GLU SEQRES 8 A 177 ASN VAL ARG ALA LYS TRP TYR PRO GLU VAL ARG HIS HIS SEQRES 9 A 177 CYS PRO ASN THR PRO ILE ILE LEU VAL GLY THR LYS LEU SEQRES 10 A 177 ASP LEU ARG ASP ASP LYS ASP THR ILE GLU LYS LEU LYS SEQRES 11 A 177 GLU LYS LYS LEU THR PRO ILE THR TYR PRO GLN GLY LEU SEQRES 12 A 177 ALA MET ALA LYS GLU ILE GLY ALA VAL LYS TYR LEU GLU SEQRES 13 A 177 CYS SER ALA LEU THR GLN ARG GLY LEU LYS THR VAL PHE SEQRES 14 A 177 ASP GLU ALA ILE ARG ALA VAL LEU SEQRES 1 B 313 GLY ALA MET GLU LYS ARG LYS SER ALA ARG ARG LYS GLU SEQRES 2 B 313 PHE ILE MET ALA GLU LEU ILE GLN THR GLU LYS ALA TYR SEQRES 3 B 313 VAL ARG ASP LEU ARG GLU CYS MET ASP THR TYR LEU TRP SEQRES 4 B 313 GLU MET THR SER GLY VAL GLU GLU ILE PRO PRO GLY ILE SEQRES 5 B 313 VAL ASN LYS GLU LEU ILE ILE PHE GLY ASN MET GLN GLU SEQRES 6 B 313 ILE TYR GLU PHE HIS ASN ASN ILE PHE LEU LYS GLU LEU SEQRES 7 B 313 GLU LYS TYR GLU GLN LEU PRO GLU ASP VAL GLY HIS CYS SEQRES 8 B 313 PHE VAL THR TRP ALA ASP LYS PHE GLN MET TYR VAL THR SEQRES 9 B 313 TYR CYS LYS ASN LYS PRO ASP SER THR GLN LEU ILE LEU SEQRES 10 B 313 GLU HIS ALA GLY SER TYR PHE ASP GLU ILE GLN GLN ARG SEQRES 11 B 313 HIS GLY LEU ALA ASN SER ILE SER SER TYR LEU ILE LYS SEQRES 12 B 313 PRO VAL GLN ARG ILE THR LYS TYR GLN LEU LEU LEU LYS SEQRES 13 B 313 GLU LEU LEU THR CYS CYS GLU GLU GLY LYS GLY GLU ILE SEQRES 14 B 313 LYS ASP GLY LEU GLU VAL MET LEU SER VAL PRO LYS ARG SEQRES 15 B 313 ALA ASN ASP ALA MET HIS LEU SER MET LEU GLU GLY PHE SEQRES 16 B 313 ASP GLU ASN ILE GLU SER GLN GLY GLU LEU ILE LEU GLN SEQRES 17 B 313 GLU SER PHE GLN VAL TRP ASP PRO LYS THR LEU ILE ARG SEQRES 18 B 313 LYS GLY ARG GLU ARG HIS LEU PHE LEU PHE GLU MET SER SEQRES 19 B 313 LEU VAL PHE SER LYS GLU VAL LYS ASP SER SER GLY ARG SEQRES 20 B 313 SER LYS TYR LEU TYR LYS SER LYS LEU PHE THR SER GLU SEQRES 21 B 313 LEU GLY VAL THR GLU HIS VAL GLU GLY ASP PRO CYS LYS SEQRES 22 B 313 PHE ALA LEU TRP VAL GLY ARG THR PRO THR SER ASP ASN SEQRES 23 B 313 LYS ILE VAL LEU LYS ALA SER SER ILE GLU ASN LYS GLN SEQRES 24 B 313 ASP TRP ILE LYS HIS ILE ARG GLU VAL ILE GLN GLU ARG SEQRES 25 B 313 THR FORMUL 3 HOH *242(H2 O) HELIX 1 1 GLY A 12 VAL A 14 5 3 HELIX 2 2 GLY A 15 THR A 25 1 11 HELIX 3 3 LEU A 67 TYR A 72 5 6 HELIX 4 4 SER A 86 LYS A 96 1 11 HELIX 5 5 LYS A 96 CYS A 105 1 10 HELIX 6 6 LYS A 116 ARG A 120 5 5 HELIX 7 7 ASP A 122 GLU A 131 1 10 HELIX 8 8 THR A 138 GLY A 150 1 13 HELIX 9 9 GLY A 164 LEU A 177 1 14 HELIX 10 10 ALA B 1231 THR B 1258 1 28 HELIX 11 11 THR B 1258 GLY B 1266 1 9 HELIX 12 12 LYS B 1277 GLY B 1283 1 7 HELIX 13 13 ASN B 1284 ILE B 1295 1 12 HELIX 14 14 ILE B 1295 TYR B 1303 1 9 HELIX 15 15 LEU B 1306 ASP B 1309 5 4 HELIX 16 16 VAL B 1310 TRP B 1317 1 8 HELIX 17 17 ALA B 1318 PHE B 1321 5 4 HELIX 18 18 GLN B 1322 ALA B 1342 1 21 HELIX 19 19 SER B 1344 GLY B 1354 1 11 HELIX 20 20 SER B 1358 CYS B 1383 1 26 HELIX 21 21 GLU B 1390 SER B 1412 1 23 HELIX 22 22 SER B 1516 GLU B 1533 1 18 SHEET 1 A 6 TYR A 40 VAL A 46 0 SHEET 2 A 6 LYS A 49 TRP A 56 -1 O VAL A 51 N VAL A 44 SHEET 3 A 6 ALA A 3 GLY A 10 1 N ILE A 4 O ASN A 52 SHEET 4 A 6 VAL A 77 SER A 83 1 O LEU A 79 N VAL A 9 SHEET 5 A 6 ILE A 110 THR A 115 1 O THR A 115 N PHE A 82 SHEET 6 A 6 LYS A 153 GLU A 156 1 O LEU A 155 N GLY A 114 SHEET 1 B 5 LEU B1414 GLU B1415 0 SHEET 2 B 5 SER B1470 LEU B1478 1 O TYR B1472 N GLU B1415 SHEET 3 B 5 LEU B1457 LYS B1464 -1 N LYS B1461 O LEU B1473 SHEET 4 B 5 LEU B1450 PHE B1453 -1 N PHE B1451 O VAL B1458 SHEET 5 B 5 LEU B1427 GLU B1431 -1 N GLU B1431 O LEU B1450 SHEET 1 C 2 LYS B1495 PHE B1496 0 SHEET 2 C 2 LEU B1512 LYS B1513 -1 O LEU B1512 N PHE B1496 CISPEP 1 SER B 1423 GLN B 1424 0 0.68 CRYST1 97.492 108.558 53.416 90.00 90.00 90.00 P 21 21 2 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010257 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009212 0.000000 0.00000 SCALE3 0.000000 0.000000 0.018721 0.00000 MASTER 428 0 0 22 13 0 0 6 3905 2 0 39 END