HEADER HYDROLASE 28-NOV-06 2O1C TITLE STRUCTURE OF THE E. COLI DIHYDRONEOPTERIN TRIPHOSPHATE TITLE 2 PYROPHOSPHOHYDROLASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DATP PYROPHOSPHOHYDROLASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.6.1.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 STRAIN: HB101; SOURCE 5 GENE: NUDB, NTPA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HMS174(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET11B KEYWDS NUDIX NTP HYDROLASE NTP PYROPHOSPHOHYDROLASE MUTT DIHYDRONEOPTERIN KEYWDS 2 TRIPHOSPHATE PYROPHOSPHOHYDROLASE FOLATE BIOSYNTHESIS, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR S.B.GABELLI,M.A.BIANCHET,L.M.AMZEL REVDAT 4 27-DEC-23 2O1C 1 REMARK REVDAT 3 13-JUL-11 2O1C 1 VERSN REVDAT 2 24-FEB-09 2O1C 1 VERSN REVDAT 1 28-AUG-07 2O1C 0 JRNL AUTH S.B.GABELLI,M.A.BIANCHET,W.XU,C.A.DUNN,Z.D.NIU,L.M.AMZEL, JRNL AUTH 2 M.J.BESSMAN JRNL TITL STRUCTURE AND FUNCTION OF THE E. COLI DIHYDRONEOPTERIN JRNL TITL 2 TRIPHOSPHATE PYROPHOSPHATASE: A NUDIX ENZYME INVOLVED IN JRNL TITL 3 FOLATE BIOSYNTHESIS. JRNL REF STRUCTURE V. 15 1014 2007 JRNL REFN ISSN 0969-2126 JRNL PMID 17698004 JRNL DOI 10.1016/J.STR.2007.06.018 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.F.O'HANDLEY,D.N.FRICK,L.C.BULLIONS,A.S.MILDVAN,M.J.BESSMAN REMARK 1 TITL ESCHERICHIA COLI ORF17 CODES FOR A NUCLEOSIDE TRIPHOSPHATE REMARK 1 TITL 2 PYROPHOSPHOHYDROLASE MEMBER OF THE MUTT FAMILY OF PROTEINS. REMARK 1 TITL 3 CLONING, PURIFICATION, AND CHARACTERIZATION OF THE ENZYME. REMARK 1 REF J.BIOL.CHEM. V. 271 24649 1996 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 8798731 REMARK 1 DOI 10.1074/JBC.271.40.24649 REMARK 1 REFERENCE 2 REMARK 1 AUTH Y.SUZUKI,G.M.BROWN REMARK 1 TITL THE BIOSYNTHESIS OF FOLIC ACID. XII. PURIFICATION AND REMARK 1 TITL 2 PROPERTIES OF DIHYDRONEOPTERIN TRIPHOSPHATE REMARK 1 TITL 3 PYROPHOSPHOHYDROLASE. REMARK 1 REF J.BIOL.CHEM. V. 249 2405 1974 REMARK 1 REFN ISSN 0021-9258 REMARK 1 PMID 4362677 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 95.78 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 3 NUMBER OF REFLECTIONS : 44933 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.229 REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.289 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2238 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3128 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.90 REMARK 3 BIN R VALUE (WORKING SET) : 0.2560 REMARK 3 BIN FREE R VALUE SET COUNT : 181 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4706 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 611 REMARK 3 REMARK 3 B VALUES. REMARK 3 B VALUE TYPE : LIKELY RESIDUAL REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.29000 REMARK 3 B22 (A**2) : -0.32000 REMARK 3 B33 (A**2) : 0.59000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.64000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.211 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.191 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.120 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.090 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.885 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4854 ; 0.009 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6611 ; 1.237 ; 1.943 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 573 ; 5.736 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 243 ;32.783 ;23.457 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 821 ;15.036 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 44 ;16.880 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 739 ; 0.079 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3668 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2408 ; 0.206 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3258 ; 0.301 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 556 ; 0.150 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 209 ; 0.414 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 78 ; 0.151 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2999 ; 0.519 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4715 ; 0.838 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2145 ; 1.411 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1896 ; 2.132 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 4 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 148 REMARK 3 ORIGIN FOR THE GROUP (A): -16.3530 2.4640 63.4410 REMARK 3 T TENSOR REMARK 3 T11: -0.0547 T22: -0.0395 REMARK 3 T33: -0.0086 T12: -0.0060 REMARK 3 T13: -0.0040 T23: 0.0035 REMARK 3 L TENSOR REMARK 3 L11: 1.2410 L22: 1.1599 REMARK 3 L33: 0.8666 L12: -0.2338 REMARK 3 L13: 0.2341 L23: 0.1784 REMARK 3 S TENSOR REMARK 3 S11: -0.0425 S12: -0.0694 S13: 0.0543 REMARK 3 S21: 0.1719 S22: -0.0028 S23: -0.0468 REMARK 3 S31: -0.0266 S32: 0.0269 S33: 0.0452 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 4 B 149 REMARK 3 ORIGIN FOR THE GROUP (A): 21.7170 2.5370 57.1450 REMARK 3 T TENSOR REMARK 3 T11: -0.0561 T22: -0.0416 REMARK 3 T33: 0.0049 T12: 0.0020 REMARK 3 T13: -0.0099 T23: -0.0082 REMARK 3 L TENSOR REMARK 3 L11: 1.4338 L22: 0.9079 REMARK 3 L33: 0.5605 L12: 0.0370 REMARK 3 L13: 0.4277 L23: -0.0608 REMARK 3 S TENSOR REMARK 3 S11: -0.0125 S12: 0.0458 S13: -0.0329 REMARK 3 S21: -0.1499 S22: -0.0076 S23: 0.0352 REMARK 3 S31: 0.0117 S32: 0.0429 S33: 0.0201 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : C 6 C 147 REMARK 3 ORIGIN FOR THE GROUP (A): -27.0250 24.3060 88.5160 REMARK 3 T TENSOR REMARK 3 T11: -0.0017 T22: -0.0155 REMARK 3 T33: -0.1228 T12: -0.0190 REMARK 3 T13: 0.0127 T23: 0.0388 REMARK 3 L TENSOR REMARK 3 L11: 2.2248 L22: 1.0498 REMARK 3 L33: 1.9704 L12: -0.1183 REMARK 3 L13: 0.5587 L23: -0.0013 REMARK 3 S TENSOR REMARK 3 S11: -0.0583 S12: -0.2229 S13: -0.1726 REMARK 3 S21: 0.1539 S22: -0.0136 S23: 0.0459 REMARK 3 S31: -0.2041 S32: 0.0748 S33: 0.0720 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : D 7 D 147 REMARK 3 ORIGIN FOR THE GROUP (A): 9.5270 23.6680 79.4800 REMARK 3 T TENSOR REMARK 3 T11: -0.0318 T22: 0.0026 REMARK 3 T33: -0.1120 T12: -0.0067 REMARK 3 T13: 0.0431 T23: 0.0108 REMARK 3 L TENSOR REMARK 3 L11: 1.4696 L22: 1.3923 REMARK 3 L33: 0.7792 L12: -0.2785 REMARK 3 L13: 0.2541 L23: -0.1134 REMARK 3 S TENSOR REMARK 3 S11: -0.0069 S12: 0.0485 S13: -0.0403 REMARK 3 S21: -0.0290 S22: -0.0658 S23: 0.0124 REMARK 3 S31: 0.0287 S32: -0.0334 S33: 0.0727 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2O1C COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-NOV-06. REMARK 100 THE DEPOSITION ID IS D_1000040562. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-APR-97; 08-AUG-98 REMARK 200 TEMPERATURE (KELVIN) : 100; 298 REMARK 200 PH : 6.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; N REMARK 200 RADIATION SOURCE : NSLS; ROTATING ANODE REMARK 200 BEAMLINE : X4A; NULL REMARK 200 X-RAY GENERATOR MODEL : NULL; RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1; 1.541 REMARK 200 MONOCHROMATOR : MIRRORS; GRAPHITE REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : FUJI; RIGAKU RAXIS IIC REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 44935 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 95.945 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08600 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.88 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.34200 REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 32.99 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.84 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.3-1.5 AMMONIUM SULFATE, 1% PROPANOL, REMARK 280 3-5 MM DTT, 4MM SODIUM PYROPHOSPHATE, 100MM NA HEPES PH 6.8, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 62.05200 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 21.28950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 62.05200 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 21.28950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 310 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 ALA A 149 REMARK 465 ALA A 150 REMARK 465 MET B 1 REMARK 465 LYS B 2 REMARK 465 ASP B 3 REMARK 465 ALA B 150 REMARK 465 MET C 1 REMARK 465 LYS C 2 REMARK 465 ASP C 3 REMARK 465 LYS C 4 REMARK 465 VAL C 5 REMARK 465 ASN C 148 REMARK 465 ALA C 149 REMARK 465 ALA C 150 REMARK 465 MET D 1 REMARK 465 LYS D 2 REMARK 465 ASP D 3 REMARK 465 LYS D 4 REMARK 465 VAL D 5 REMARK 465 TYR D 6 REMARK 465 ALA D 149 REMARK 465 ALA D 150 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH1 ARG D 139 O HOH D 151 2.08 REMARK 500 O HOH C 199 O HOH C 271 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 S SO4 A 165 O4 SO4 A 165 2556 1.20 REMARK 500 O2 SO4 A 165 O3 SO4 A 165 2556 1.23 REMARK 500 S SO4 A 165 S SO4 A 165 2556 1.29 REMARK 500 O1 SO4 A 165 O4 SO4 A 165 2556 1.41 REMARK 500 S SO4 A 165 O2 SO4 A 165 2556 1.51 REMARK 500 O4 SO4 A 165 O4 SO4 A 165 2556 1.59 REMARK 500 O2 SO4 A 165 O4 SO4 A 165 2556 1.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 97 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 ARG A 97 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 9 27.88 -78.96 REMARK 500 PRO B 9 31.72 -83.89 REMARK 500 PRO C 9 35.67 -84.65 REMARK 500 LYS C 22 13.05 58.22 REMARK 500 GLN C 69 57.40 -99.93 REMARK 500 PRO D 9 43.20 -78.52 REMARK 500 SER D 38 -167.15 -79.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 164 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPV A 163 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPV B 165 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PPV C 163 DBREF 2O1C A 1 150 UNP P0AFC0 NUDB_ECOLI 1 150 DBREF 2O1C B 1 150 UNP P0AFC0 NUDB_ECOLI 1 150 DBREF 2O1C C 1 150 UNP P0AFC0 NUDB_ECOLI 1 150 DBREF 2O1C D 1 150 UNP P0AFC0 NUDB_ECOLI 1 150 SEQRES 1 A 150 MET LYS ASP LYS VAL TYR LYS ARG PRO VAL SER ILE LEU SEQRES 2 A 150 VAL VAL ILE TYR ALA GLN ASP THR LYS ARG VAL LEU MET SEQRES 3 A 150 LEU GLN ARG ARG ASP ASP PRO ASP PHE TRP GLN SER VAL SEQRES 4 A 150 THR GLY SER VAL GLU GLU GLY GLU THR ALA PRO GLN ALA SEQRES 5 A 150 ALA MET ARG GLU VAL LYS GLU GLU VAL THR ILE ASP VAL SEQRES 6 A 150 VAL ALA GLU GLN LEU THR LEU ILE ASP CYS GLN ARG THR SEQRES 7 A 150 VAL GLU PHE GLU ILE PHE SER HIS LEU ARG HIS ARG TYR SEQRES 8 A 150 ALA PRO GLY VAL THR ARG ASN THR GLU SER TRP PHE CYS SEQRES 9 A 150 LEU ALA LEU PRO HIS GLU ARG GLN ILE VAL PHE THR GLU SEQRES 10 A 150 HIS LEU ALA TYR LYS TRP LEU ASP ALA PRO ALA ALA ALA SEQRES 11 A 150 ALA LEU THR LYS SER TRP SER ASN ARG GLN ALA ILE GLU SEQRES 12 A 150 GLN PHE VAL ILE ASN ALA ALA SEQRES 1 B 150 MET LYS ASP LYS VAL TYR LYS ARG PRO VAL SER ILE LEU SEQRES 2 B 150 VAL VAL ILE TYR ALA GLN ASP THR LYS ARG VAL LEU MET SEQRES 3 B 150 LEU GLN ARG ARG ASP ASP PRO ASP PHE TRP GLN SER VAL SEQRES 4 B 150 THR GLY SER VAL GLU GLU GLY GLU THR ALA PRO GLN ALA SEQRES 5 B 150 ALA MET ARG GLU VAL LYS GLU GLU VAL THR ILE ASP VAL SEQRES 6 B 150 VAL ALA GLU GLN LEU THR LEU ILE ASP CYS GLN ARG THR SEQRES 7 B 150 VAL GLU PHE GLU ILE PHE SER HIS LEU ARG HIS ARG TYR SEQRES 8 B 150 ALA PRO GLY VAL THR ARG ASN THR GLU SER TRP PHE CYS SEQRES 9 B 150 LEU ALA LEU PRO HIS GLU ARG GLN ILE VAL PHE THR GLU SEQRES 10 B 150 HIS LEU ALA TYR LYS TRP LEU ASP ALA PRO ALA ALA ALA SEQRES 11 B 150 ALA LEU THR LYS SER TRP SER ASN ARG GLN ALA ILE GLU SEQRES 12 B 150 GLN PHE VAL ILE ASN ALA ALA SEQRES 1 C 150 MET LYS ASP LYS VAL TYR LYS ARG PRO VAL SER ILE LEU SEQRES 2 C 150 VAL VAL ILE TYR ALA GLN ASP THR LYS ARG VAL LEU MET SEQRES 3 C 150 LEU GLN ARG ARG ASP ASP PRO ASP PHE TRP GLN SER VAL SEQRES 4 C 150 THR GLY SER VAL GLU GLU GLY GLU THR ALA PRO GLN ALA SEQRES 5 C 150 ALA MET ARG GLU VAL LYS GLU GLU VAL THR ILE ASP VAL SEQRES 6 C 150 VAL ALA GLU GLN LEU THR LEU ILE ASP CYS GLN ARG THR SEQRES 7 C 150 VAL GLU PHE GLU ILE PHE SER HIS LEU ARG HIS ARG TYR SEQRES 8 C 150 ALA PRO GLY VAL THR ARG ASN THR GLU SER TRP PHE CYS SEQRES 9 C 150 LEU ALA LEU PRO HIS GLU ARG GLN ILE VAL PHE THR GLU SEQRES 10 C 150 HIS LEU ALA TYR LYS TRP LEU ASP ALA PRO ALA ALA ALA SEQRES 11 C 150 ALA LEU THR LYS SER TRP SER ASN ARG GLN ALA ILE GLU SEQRES 12 C 150 GLN PHE VAL ILE ASN ALA ALA SEQRES 1 D 150 MET LYS ASP LYS VAL TYR LYS ARG PRO VAL SER ILE LEU SEQRES 2 D 150 VAL VAL ILE TYR ALA GLN ASP THR LYS ARG VAL LEU MET SEQRES 3 D 150 LEU GLN ARG ARG ASP ASP PRO ASP PHE TRP GLN SER VAL SEQRES 4 D 150 THR GLY SER VAL GLU GLU GLY GLU THR ALA PRO GLN ALA SEQRES 5 D 150 ALA MET ARG GLU VAL LYS GLU GLU VAL THR ILE ASP VAL SEQRES 6 D 150 VAL ALA GLU GLN LEU THR LEU ILE ASP CYS GLN ARG THR SEQRES 7 D 150 VAL GLU PHE GLU ILE PHE SER HIS LEU ARG HIS ARG TYR SEQRES 8 D 150 ALA PRO GLY VAL THR ARG ASN THR GLU SER TRP PHE CYS SEQRES 9 D 150 LEU ALA LEU PRO HIS GLU ARG GLN ILE VAL PHE THR GLU SEQRES 10 D 150 HIS LEU ALA TYR LYS TRP LEU ASP ALA PRO ALA ALA ALA SEQRES 11 D 150 ALA LEU THR LYS SER TRP SER ASN ARG GLN ALA ILE GLU SEQRES 12 D 150 GLN PHE VAL ILE ASN ALA ALA HET SO4 A 164 5 HET SO4 A 165 5 HET PPV A 163 9 HET SO4 B 164 5 HET SO4 B 163 5 HET PPV B 165 9 HET PPV C 163 9 HETNAM SO4 SULFATE ION HETNAM PPV PYROPHOSPHATE FORMUL 5 SO4 4(O4 S 2-) FORMUL 7 PPV 3(H4 O7 P2) FORMUL 12 HOH *611(H2 O) HELIX 1 1 THR A 48 THR A 62 1 15 HELIX 2 2 ASP A 64 GLN A 69 1 6 HELIX 3 3 PHE A 84 TYR A 91 5 8 HELIX 4 4 ALA A 126 THR A 133 1 8 HELIX 5 5 SER A 135 VAL A 146 1 12 HELIX 6 6 THR B 48 THR B 62 1 15 HELIX 7 7 PHE B 84 TYR B 91 5 8 HELIX 8 8 ALA B 126 THR B 133 1 8 HELIX 9 9 SER B 135 VAL B 146 1 12 HELIX 10 10 THR C 48 THR C 62 1 15 HELIX 11 11 PHE C 84 TYR C 91 5 8 HELIX 12 12 ASP C 125 THR C 133 1 9 HELIX 13 13 SER C 135 VAL C 146 1 12 HELIX 14 14 THR D 48 THR D 62 1 15 HELIX 15 15 PHE D 84 TYR D 91 5 8 HELIX 16 16 ALA D 126 THR D 133 1 8 HELIX 17 17 SER D 135 VAL D 146 1 12 SHEET 1 A 4 VAL A 39 SER A 42 0 SHEET 2 A 4 VAL A 10 ALA A 18 -1 N VAL A 14 O VAL A 39 SHEET 3 A 4 ARG A 97 LEU A 107 1 O THR A 99 N SER A 11 SHEET 4 A 4 LEU A 72 GLU A 82 -1 N PHE A 81 O ASN A 98 SHEET 1 B 3 TRP A 36 GLN A 37 0 SHEET 2 B 3 ARG A 23 GLN A 28 -1 N LEU A 27 O GLN A 37 SHEET 3 B 3 TYR A 121 ASP A 125 -1 O LEU A 124 N VAL A 24 SHEET 1 C 4 VAL B 39 SER B 42 0 SHEET 2 C 4 VAL B 10 ALA B 18 -1 N VAL B 14 O VAL B 39 SHEET 3 C 4 ARG B 97 LEU B 107 1 O THR B 99 N SER B 11 SHEET 4 C 4 LEU B 72 GLU B 82 -1 N PHE B 81 O ASN B 98 SHEET 1 D 3 TRP B 36 GLN B 37 0 SHEET 2 D 3 ARG B 23 GLN B 28 -1 N LEU B 27 O GLN B 37 SHEET 3 D 3 TYR B 121 ASP B 125 -1 O LEU B 124 N VAL B 24 SHEET 1 E 4 VAL C 39 SER C 42 0 SHEET 2 E 4 VAL C 10 ALA C 18 -1 N VAL C 14 O VAL C 39 SHEET 3 E 4 ARG C 97 LEU C 107 1 O THR C 99 N SER C 11 SHEET 4 E 4 LEU C 72 GLU C 82 -1 N VAL C 79 O GLU C 100 SHEET 1 F 3 TRP C 36 GLN C 37 0 SHEET 2 F 3 VAL C 24 GLN C 28 -1 N LEU C 27 O GLN C 37 SHEET 3 F 3 ALA C 120 LEU C 124 -1 O LEU C 124 N VAL C 24 SHEET 1 G 4 VAL D 39 SER D 42 0 SHEET 2 G 4 VAL D 10 ALA D 18 -1 N VAL D 14 O VAL D 39 SHEET 3 G 4 ARG D 97 LEU D 107 1 O THR D 99 N SER D 11 SHEET 4 G 4 LEU D 72 GLU D 82 -1 N PHE D 81 O ASN D 98 SHEET 1 H 3 TRP D 36 GLN D 37 0 SHEET 2 H 3 ARG D 23 ARG D 29 -1 N LEU D 27 O GLN D 37 SHEET 3 H 3 HIS D 118 ASP D 125 -1 O LEU D 124 N VAL D 24 SITE 1 AC1 6 LYS A 4 LYS A 7 ARG A 30 ARG A 90 SITE 2 AC1 6 HOH A 190 HOH A 253 SITE 1 AC2 6 PHE A 81 GLU A 82 ARG A 97 TRP A 136 SITE 2 AC2 6 HOH A 169 HOH A 191 SITE 1 AC3 3 LYS B 4 LYS B 7 ARG B 90 SITE 1 AC4 11 PHE B 81 GLU B 82 ARG B 97 TRP B 136 SITE 2 AC4 11 HOH B 169 PHE C 81 GLU C 82 ARG C 97 SITE 3 AC4 11 TRP C 136 HOH C 181 HOH C 182 SITE 1 AC5 10 LYS A 7 ARG A 29 THR A 40 GLY A 41 SITE 2 AC5 10 SER A 42 GLU A 56 HOH A 194 HOH A 198 SITE 3 AC5 10 HOH A 238 HOH A 282 SITE 1 AC6 8 LYS B 7 ARG B 29 THR B 40 GLY B 41 SITE 2 AC6 8 SER B 42 GLU B 56 HOH B 209 HOH B 315 SITE 1 AC7 10 LYS C 7 THR C 40 GLY C 41 SER C 42 SITE 2 AC7 10 GLU C 56 ARG C 90 HOH C 177 HOH C 245 SITE 3 AC7 10 HOH C 272 HOH C 274 CRYST1 124.104 42.579 106.467 90.00 115.69 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008058 0.000000 0.003876 0.00000 SCALE2 0.000000 0.023486 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010423 0.00000