data_2O1I # _entry.id 2O1I # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.383 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 2O1I pdb_00002o1i 10.2210/pdb2o1i/pdb NDB DD0088 ? ? RCSB RCSB040568 ? ? WWPDB D_1000040568 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2007-01-09 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-12-27 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_special_symmetry 5 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 4 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 5 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 2O1I _pdbx_database_status.recvd_initial_deposition_date 2006-11-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Pierre, V.C.' 1 'Kaiser, J.T.' 2 'Barton, J.K.' 3 # _citation.id primary _citation.title 'Insights into finding a mismatch through the structure of a mispaired DNA bound by a rhodium intercalator.' _citation.journal_abbrev Proc.Natl.Acad.Sci.Usa _citation.journal_volume 104 _citation.page_first 429 _citation.page_last 434 _citation.year 2007 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 17194756 _citation.pdbx_database_id_DOI 10.1073/pnas.0610170104 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Pierre, V.C.' 1 ? primary 'Kaiser, J.T.' 2 ? primary 'Barton, J.K.' 3 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "5'-D(*CP*GP*GP*AP*AP*AP*TP*TP*CP*CP*CP*G)-3'" 3647.393 1 ? ? ? ? 2 non-polymer syn "bis(2,2'-bipyridine-kappa~2~N~1~,N~1'~)[chrysene-5,6-diiminato(2-)-kappa~2~N,N']rhodium(4+)" 669.559 3 ? ? ? ? 3 water nat water 18.015 75 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DG)(DA)(DA)(DA)(DT)(DT)(DC)(DC)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGGAAATTCCCG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 "bis(2,2'-bipyridine-kappa~2~N~1~,N~1'~)[chrysene-5,6-diiminato(2-)-kappa~2~N,N']rhodium(4+)" R1C 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DG n 1 4 DA n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DC n 1 11 DC n 1 12 DG n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'solid phase synthesis' # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 R1C non-polymer . "bis(2,2'-bipyridine-kappa~2~N~1~,N~1'~)[chrysene-5,6-diiminato(2-)-kappa~2~N,N']rhodium(4+)" ;DELTA-Rhodium(III)- bis-(2,2'-bipyridyl)-5,6-chrysenequinone diimine ; 'C38 H26 N6 Rh 4' 669.559 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DG 3 3 3 DG G A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DC 10 10 10 DC C A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 R1C 1 1001 1001 R1C R1C A . C 2 R1C 1 2011 2011 R1C R1C A . D 2 R1C 1 1002 1002 R1C R1C A . E 3 HOH 1 2012 1 HOH HOH A . E 3 HOH 2 2013 2 HOH HOH A . E 3 HOH 3 2014 3 HOH HOH A . E 3 HOH 4 2015 4 HOH HOH A . E 3 HOH 5 2016 5 HOH HOH A . E 3 HOH 6 2017 6 HOH HOH A . E 3 HOH 7 2018 7 HOH HOH A . E 3 HOH 8 2019 8 HOH HOH A . E 3 HOH 9 2020 9 HOH HOH A . E 3 HOH 10 2021 10 HOH HOH A . E 3 HOH 11 2022 11 HOH HOH A . E 3 HOH 12 2023 12 HOH HOH A . E 3 HOH 13 2024 13 HOH HOH A . E 3 HOH 14 2025 14 HOH HOH A . E 3 HOH 15 2026 15 HOH HOH A . E 3 HOH 16 2027 16 HOH HOH A . E 3 HOH 17 2028 17 HOH HOH A . E 3 HOH 18 2029 18 HOH HOH A . E 3 HOH 19 2030 19 HOH HOH A . E 3 HOH 20 2031 20 HOH HOH A . E 3 HOH 21 2032 21 HOH HOH A . E 3 HOH 22 2033 22 HOH HOH A . E 3 HOH 23 2034 23 HOH HOH A . E 3 HOH 24 2035 24 HOH HOH A . E 3 HOH 25 2036 25 HOH HOH A . E 3 HOH 26 2037 26 HOH HOH A . E 3 HOH 27 2038 27 HOH HOH A . E 3 HOH 28 2039 28 HOH HOH A . E 3 HOH 29 2040 29 HOH HOH A . E 3 HOH 30 2041 30 HOH HOH A . E 3 HOH 31 2042 31 HOH HOH A . E 3 HOH 32 2043 32 HOH HOH A . E 3 HOH 33 2044 33 HOH HOH A . E 3 HOH 34 2045 34 HOH HOH A . E 3 HOH 35 2046 35 HOH HOH A . E 3 HOH 36 2047 36 HOH HOH A . E 3 HOH 37 2048 37 HOH HOH A . E 3 HOH 38 2049 38 HOH HOH A . E 3 HOH 39 2050 39 HOH HOH A . E 3 HOH 40 2051 40 HOH HOH A . E 3 HOH 41 2052 41 HOH HOH A . E 3 HOH 42 2053 42 HOH HOH A . E 3 HOH 43 2054 43 HOH HOH A . E 3 HOH 44 2055 44 HOH HOH A . E 3 HOH 45 2056 45 HOH HOH A . E 3 HOH 46 2057 46 HOH HOH A . E 3 HOH 47 2058 47 HOH HOH A . E 3 HOH 48 2059 48 HOH HOH A . E 3 HOH 49 2060 49 HOH HOH A . E 3 HOH 50 2061 50 HOH HOH A . E 3 HOH 51 2062 51 HOH HOH A . E 3 HOH 52 2063 52 HOH HOH A . E 3 HOH 53 2064 53 HOH HOH A . E 3 HOH 54 2065 54 HOH HOH A . E 3 HOH 55 2066 55 HOH HOH A . E 3 HOH 56 2067 56 HOH HOH A . E 3 HOH 57 2068 57 HOH HOH A . E 3 HOH 58 2069 58 HOH HOH A . E 3 HOH 59 2070 59 HOH HOH A . E 3 HOH 60 2071 60 HOH HOH A . E 3 HOH 61 2072 61 HOH HOH A . E 3 HOH 62 2073 62 HOH HOH A . E 3 HOH 63 2074 64 HOH HOH A . E 3 HOH 64 2075 65 HOH HOH A . E 3 HOH 65 2076 66 HOH HOH A . E 3 HOH 66 2077 67 HOH HOH A . E 3 HOH 67 2078 68 HOH HOH A . E 3 HOH 68 2079 69 HOH HOH A . E 3 HOH 69 2080 70 HOH HOH A . E 3 HOH 70 2081 71 HOH HOH A . E 3 HOH 71 2082 72 HOH HOH A . E 3 HOH 72 2083 73 HOH HOH A . E 3 HOH 73 2084 74 HOH HOH A . E 3 HOH 74 2085 75 HOH HOH A . E 3 HOH 75 2086 76 HOH HOH A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELX 'model building' . ? 1 SHELXL-97 refinement . ? 2 Blu-Ice 'data collection' . ? 3 MOSFLM 'data reduction' . ? 4 CCP4 'data scaling' '(SCALA)' ? 5 SHELXD phasing . ? 6 # _cell.entry_id 2O1I _cell.length_a 38.740 _cell.length_b 38.740 _cell.length_c 57.560 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2O1I _symmetry.space_group_name_H-M 'P 43 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? # _exptl.entry_id 2O1I _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.0 _exptl_crystal.density_percent_sol 56.63 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;SrCl2 40mM, MgCl2 10mM, Na-cacodylate 20mM, spermine-4HCl 6mM, MPD 5%(v/v)equilibrated against 35% MPD, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range . # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 SrCl2 ? ? ? 1 2 1 MgCl2 ? ? ? 1 3 1 Na-cacodylate ? ? ? 1 4 1 spermine-4HCl ? ? ? 1 5 1 MPD ? ? ? 1 6 1 HOH ? ? ? 1 7 2 SrCl2 ? ? ? 1 8 2 MgCl2 ? ? ? 1 9 2 Na-cacodylate ? ? ? 1 10 2 MPD ? ? ? 1 11 2 HOH ? ? ? # loop_ _diffrn.id _diffrn.ambient_temp _diffrn.ambient_temp_details _diffrn.crystal_id 1 100 ? 1 2 100 ? 1 # loop_ _diffrn_detector.diffrn_id _diffrn_detector.detector _diffrn_detector.type _diffrn_detector.pdbx_collection_date _diffrn_detector.details 1 'IMAGE PLATE' 'RIGAKU RAXIS IV' 2006-05-05 ? 2 CCD 'ADSC QUANTUM 315' 2006-05-19 ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # loop_ _diffrn_radiation_wavelength.id _diffrn_radiation_wavelength.wavelength _diffrn_radiation_wavelength.wt 1 1.5418 1.0 2 1.03317 1.0 # loop_ _diffrn_source.diffrn_id _diffrn_source.source _diffrn_source.type _diffrn_source.pdbx_synchrotron_site _diffrn_source.pdbx_synchrotron_beamline _diffrn_source.pdbx_wavelength _diffrn_source.pdbx_wavelength_list 1 'ROTATING ANODE' RIGAKU ? ? ? 1.5418 2 SYNCHROTRON 'SSRL BEAMLINE BL11-1' SSRL BL11-1 ? 1.03317 # _reflns.entry_id 2O1I _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I ? _reflns.d_resolution_high 1.10 _reflns.d_resolution_low 24 _reflns.number_all ? _reflns.number_obs 17269 _reflns.percent_possible_obs 94.0 _reflns.pdbx_Rmerge_I_obs 0.107 _reflns.pdbx_Rsym_value 0.107 _reflns.pdbx_netI_over_sigmaI 13.4 _reflns.B_iso_Wilson_estimate 14.85 _reflns.pdbx_redundancy 8.7 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.07 _reflns_shell.d_res_low 1.14 _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.015 _reflns_shell.pdbx_Rsym_value 1.5 _reflns_shell.meanI_over_sigI_obs .9 _reflns_shell.pdbx_redundancy 5.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2O1I _refine.ls_number_reflns_obs 17269 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low ? _refine.ls_d_res_high 1.10 _refine.ls_percent_reflns_obs 94.0 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all 0.1515 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.204 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters 4070 _refine.ls_number_restraints 5578 _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_phase_error ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 2O1I _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 2 _refine_analyze.occupancy_sum_hydrogen 178.00 _refine_analyze.occupancy_sum_non_hydrogen 384.00 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 242 _refine_hist.pdbx_number_atoms_ligand 135 _refine_hist.number_atoms_solvent 75 _refine_hist.number_atoms_total 452 _refine_hist.d_res_high 1.10 _refine_hist.d_res_low . # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.024 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.041 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0135 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.022 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.005 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.036 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.109 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 2O1I _pdbx_refine.R_factor_all_no_cutoff 0.1515 _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff 0.13 _pdbx_refine.R_factor_obs_4sig_cutoff ? _pdbx_refine.free_R_factor_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff ? _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff ? _pdbx_refine.number_reflns_obs_4sig_cutoff 12124 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 2O1I _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 2O1I _struct.title 'RH(BPY)2CHRYSI complexed to mismatched DNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2O1I _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DNA mismatch, metallointercalator, DNA recognition, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 2O1I _struct_ref.pdbx_db_accession 2O1I _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 2O1I _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 12 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 2O1I _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 12 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 7_555 y,x,-z 0.0000000000 1.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 # loop_ _struct_biol.id _struct_biol.details _struct_biol.pdbx_parent_biol_id 1 'The second part of the biological assembly is generated by the two fold axis y,x,-z.' ? 2 'The second part of the biological assembly is generated by the two fold axis y,x,-z.' ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 12 N1 ? ? A DC 1 A DG 12 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 12 O6 ? ? A DC 1 A DG 12 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 12 N2 ? ? A DC 1 A DG 12 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 A DC 11 N3 ? ? A DG 2 A DC 11 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 A DC 11 O2 ? ? A DG 2 A DC 11 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 A DC 11 N4 ? ? A DG 2 A DC 11 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DG 3 N1 ? ? ? 1_555 A DC 10 N3 ? ? A DG 3 A DC 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DG 3 N2 ? ? ? 1_555 A DC 10 O2 ? ? A DG 3 A DC 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 3 O6 ? ? ? 1_555 A DC 10 N4 ? ? A DG 3 A DC 10 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 5 N1 ? ? ? 1_555 A DT 8 N3 ? ? A DA 5 A DT 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 5 N6 ? ? ? 1_555 A DT 8 O4 ? ? A DA 5 A DT 8 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DA 6 N1 ? ? ? 1_555 A DT 7 N3 ? ? A DA 6 A DT 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 6 N6 ? ? ? 1_555 A DT 7 O4 ? ? A DA 6 A DT 7 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DT 7 N3 ? ? ? 1_555 A DA 6 N1 ? ? A DT 7 A DA 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DT 7 O4 ? ? ? 1_555 A DA 6 N6 ? ? A DT 7 A DA 6 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 5 N1 ? ? A DT 8 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 5 N6 ? ? A DT 8 A DA 5 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 10 N3 ? ? ? 1_555 A DG 3 N1 ? ? A DC 10 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 10 N4 ? ? ? 1_555 A DG 3 O6 ? ? A DC 10 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 10 O2 ? ? ? 1_555 A DG 3 N2 ? ? A DC 10 A DG 3 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 11 N3 ? ? ? 1_555 A DG 2 N1 ? ? A DC 11 A DG 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 11 N4 ? ? ? 1_555 A DG 2 O6 ? ? A DC 11 A DG 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 11 O2 ? ? ? 1_555 A DG 2 N2 ? ? A DC 11 A DG 2 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 12 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 12 A DC 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 12 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 12 A DC 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 12 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 12 A DC 1 7_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A R1C 1001 ? 6 'BINDING SITE FOR RESIDUE R1C A 1001' AC2 Software A R1C 2011 ? 7 'BINDING SITE FOR RESIDUE R1C A 2011' AC3 Software A R1C 1002 ? 8 'BINDING SITE FOR RESIDUE R1C A 1002' 1 ? ? ? ? ? ? ? # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 DC A 1 ? DC A 1 . ? 5_444 ? 2 AC1 6 DA A 5 ? DA A 5 . ? 1_555 ? 3 AC1 6 DA A 6 ? DA A 6 . ? 7_555 ? 4 AC1 6 DT A 7 ? DT A 7 . ? 7_555 ? 5 AC1 6 DG A 12 ? DG A 12 . ? 3_444 ? 6 AC1 6 HOH E . ? HOH A 2047 . ? 1_555 ? 7 AC2 7 DC A 1 ? DC A 1 . ? 4_445 ? 8 AC2 7 DA A 5 ? DA A 5 . ? 7_555 ? 9 AC2 7 DA A 6 ? DA A 6 . ? 7_555 ? 10 AC2 7 DT A 7 ? DT A 7 . ? 7_555 ? 11 AC2 7 DG A 12 ? DG A 12 . ? 6_445 ? 12 AC2 7 HOH E . ? HOH A 2017 . ? 7_555 ? 13 AC2 7 HOH E . ? HOH A 2047 . ? 1_555 ? 14 AC3 8 DG A 3 ? DG A 3 . ? 7_555 ? 15 AC3 8 DA A 4 ? DA A 4 . ? 2_555 ? 16 AC3 8 DA A 5 ? DA A 5 . ? 7_555 ? 17 AC3 8 DT A 8 ? DT A 8 . ? 1_555 ? 18 AC3 8 DC A 9 ? DC A 9 . ? 1_555 ? 19 AC3 8 DC A 10 ? DC A 10 . ? 1_555 ? 20 AC3 8 DC A 11 ? DC A 11 . ? 1_555 ? 21 AC3 8 HOH E . ? HOH A 2065 . ? 1_555 ? # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 "O5'" A DC 10 ? ? O A HOH 2078 ? ? 1.26 2 1 P A DC 10 ? ? O A HOH 2078 ? ? 1.41 3 1 O A HOH 2059 ? ? O A HOH 2069 ? ? 1.54 4 1 OP1 A DC 10 ? ? O A HOH 2078 ? ? 1.55 5 1 O A HOH 2034 ? ? O A HOH 2073 ? ? 1.59 6 1 O A HOH 2036 ? ? O A HOH 2074 ? ? 2.04 7 1 O A HOH 2061 ? ? O A HOH 2085 ? ? 2.13 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 C5 A DG 2 ? ? N7 A DG 2 ? ? 1.429 1.388 0.041 0.006 N 2 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? 1.546 1.420 0.126 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 4 ? ? "C4'" A DA 4 ? ? "C3'" A DA 4 ? ? 101.78 104.50 -2.72 0.40 N 2 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 100.21 108.00 -7.79 0.70 N 3 1 "C3'" A DA 5 ? ? "C2'" A DA 5 ? ? "C1'" A DA 5 ? ? 96.36 102.40 -6.04 0.80 N 4 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 111.57 108.30 3.27 0.30 N 5 1 C2 A DA 6 ? ? N3 A DA 6 ? ? C4 A DA 6 ? ? 106.70 110.60 -3.90 0.50 N 6 1 "O4'" A DT 7 ? ? "C4'" A DT 7 ? ? "C3'" A DT 7 ? ? 99.81 104.50 -4.69 0.40 N 7 1 "C4'" A DT 7 ? ? "C3'" A DT 7 ? ? "C2'" A DT 7 ? ? 110.06 103.10 6.96 0.90 N 8 1 N1 A DT 7 ? ? "C1'" A DT 7 ? ? "C2'" A DT 7 ? ? 122.79 114.30 8.49 1.40 N 9 1 "O4'" A DT 7 ? ? "C1'" A DT 7 ? ? N1 A DT 7 ? ? 99.41 108.00 -8.59 0.70 N 10 1 "O4'" A DT 8 ? ? "C1'" A DT 8 ? ? N1 A DT 8 ? ? 103.64 108.00 -4.36 0.70 N 11 1 C6 A DT 8 ? ? N1 A DT 8 ? ? C2 A DT 8 ? ? 124.90 121.30 3.60 0.50 N 12 1 C6 A DC 9 ? ? N1 A DC 9 ? ? C2 A DC 9 ? ? 124.34 120.30 4.04 0.40 N 13 1 N3 A DC 9 ? ? C4 A DC 9 ? ? C5 A DC 9 ? ? 124.91 121.90 3.01 0.40 N 14 1 N3 A DC 9 ? ? C2 A DC 9 ? ? O2 A DC 9 ? ? 126.21 121.90 4.31 0.70 N 15 1 C5 A DC 9 ? ? C4 A DC 9 ? ? N4 A DC 9 ? ? 114.17 120.20 -6.03 0.70 N 16 1 "O5'" A DC 10 ? ? "C5'" A DC 10 ? ? "C4'" A DC 10 ? ? 103.53 109.40 -5.87 0.80 N 17 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 101.83 108.00 -6.17 0.70 N 18 1 "O4'" A DG 12 ? ? "C4'" A DG 12 ? ? "C3'" A DG 12 ? ? 101.98 104.50 -2.52 0.40 N 19 1 N9 A DG 12 ? ? "C1'" A DG 12 ? ? "C2'" A DG 12 ? ? 124.40 114.30 10.10 1.40 N 20 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 93.93 108.00 -14.07 0.70 N # _struct_site_keywords.site_id 1 _struct_site_keywords.text INTERCALATION # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A R1C 1001 ? B R1C . 2 1 A HOH 2013 ? E HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 R1C RH RH N N 147 R1C N5 N N N 148 R1C N6 N N N 149 R1C C21 C Y N 150 R1C C22 C Y N 151 R1C C23 C Y N 152 R1C C24 C Y N 153 R1C C25 C Y N 154 R1C C26 C Y N 155 R1C C27 C Y N 156 R1C C28 C Y N 157 R1C C29 C Y N 158 R1C C30 C Y N 159 R1C C31 C Y N 160 R1C C32 C Y N 161 R1C C33 C Y N 162 R1C C34 C Y N 163 R1C C35 C Y N 164 R1C C36 C Y N 165 R1C C37 C Y N 166 R1C C38 C Y N 167 R1C N1 N Y N 168 R1C N2 N Y N 169 R1C N3 N Y N 170 R1C N4 N Y N 171 R1C C1 C Y N 172 R1C C2 C Y N 173 R1C C3 C Y N 174 R1C C4 C Y N 175 R1C C5 C Y N 176 R1C C6 C Y N 177 R1C C7 C Y N 178 R1C C8 C Y N 179 R1C C9 C Y N 180 R1C C10 C Y N 181 R1C C11 C Y N 182 R1C C12 C Y N 183 R1C C13 C Y N 184 R1C C14 C Y N 185 R1C C15 C Y N 186 R1C C16 C Y N 187 R1C C17 C Y N 188 R1C C18 C Y N 189 R1C C19 C Y N 190 R1C C20 C Y N 191 R1C H25 H N N 192 R1C H26 H N N 193 R1C H27 H N N 194 R1C H28 H N N 195 R1C H30 H N N 196 R1C H31 H N N 197 R1C H34 H N N 198 R1C H35 H N N 199 R1C H36 H N N 200 R1C H37 H N N 201 R1C H1 H N N 202 R1C H2 H N N 203 R1C H3 H N N 204 R1C H4 H N N 205 R1C H7 H N N 206 R1C H8 H N N 207 R1C H9 H N N 208 R1C H10 H N N 209 R1C H11 H N N 210 R1C H12 H N N 211 R1C H13 H N N 212 R1C H14 H N N 213 R1C H17 H N N 214 R1C H18 H N N 215 R1C H19 H N N 216 R1C H20 H N N 217 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 R1C C27 C26 doub Y N 152 R1C C27 C28 sing Y N 153 R1C C2 C3 doub Y N 154 R1C C2 C1 sing Y N 155 R1C C26 C25 sing Y N 156 R1C C28 C29 doub Y N 157 R1C C3 C4 sing Y N 158 R1C C12 C11 doub Y N 159 R1C C12 C13 sing Y N 160 R1C C1 N1 doub Y N 161 R1C C25 C24 doub Y N 162 R1C C29 C24 sing Y N 163 R1C C29 C30 sing Y N 164 R1C C11 N3 sing Y N 165 R1C C4 C5 doub Y N 166 R1C C13 C14 doub Y N 167 R1C C24 C23 sing Y N 168 R1C C30 C31 doub Y N 169 R1C N1 C5 sing Y N 170 R1C N1 RH sing N N 171 R1C C5 C6 sing Y N 172 R1C N6 C22 doub N N 173 R1C N6 RH sing N N 174 R1C N3 C15 doub Y N 175 R1C N3 RH sing N N 176 R1C C23 C22 sing Y N 177 R1C C23 C32 doub Y N 178 R1C C14 C15 sing Y N 179 R1C C31 C32 sing Y N 180 R1C C22 C21 sing Y N 181 R1C C32 C33 sing Y N 182 R1C C15 C16 sing Y N 183 R1C RH N2 sing N N 184 R1C RH N5 sing N N 185 R1C RH N4 sing N N 186 R1C C6 N2 doub Y N 187 R1C C6 C7 sing Y N 188 R1C C21 N5 doub N N 189 R1C C21 C38 sing Y N 190 R1C N2 C10 sing Y N 191 R1C C33 C38 doub Y N 192 R1C C33 C34 sing Y N 193 R1C C7 C8 doub Y N 194 R1C C38 C37 sing Y N 195 R1C C16 N4 doub Y N 196 R1C C16 C17 sing Y N 197 R1C C34 C35 doub Y N 198 R1C N4 C20 sing Y N 199 R1C C10 C9 doub Y N 200 R1C C8 C9 sing Y N 201 R1C C17 C18 doub Y N 202 R1C C37 C36 doub Y N 203 R1C C35 C36 sing Y N 204 R1C C20 C19 doub Y N 205 R1C C18 C19 sing Y N 206 R1C C25 H25 sing N N 207 R1C C26 H26 sing N N 208 R1C C27 H27 sing N N 209 R1C C28 H28 sing N N 210 R1C C30 H30 sing N N 211 R1C C31 H31 sing N N 212 R1C C34 H34 sing N N 213 R1C C35 H35 sing N N 214 R1C C36 H36 sing N N 215 R1C C37 H37 sing N N 216 R1C C1 H1 sing N N 217 R1C C2 H2 sing N N 218 R1C C3 H3 sing N N 219 R1C C4 H4 sing N N 220 R1C C7 H7 sing N N 221 R1C C8 H8 sing N N 222 R1C C9 H9 sing N N 223 R1C C10 H10 sing N N 224 R1C C11 H11 sing N N 225 R1C C12 H12 sing N N 226 R1C C13 H13 sing N N 227 R1C C14 H14 sing N N 228 R1C C17 H17 sing N N 229 R1C C18 H18 sing N N 230 R1C C19 H19 sing N N 231 R1C C20 H20 sing N N 232 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 2O1I 'double helix' 2O1I 'b-form double helix' 2O1I 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 12 7_555 0.212 -0.238 0.489 -8.306 -8.404 -2.428 1 A_DC1:DG12_A A 1 ? A 12 ? 19 1 1 A DG 2 1_555 A DC 11 7_555 -0.165 -0.205 0.049 4.494 2.404 -2.532 2 A_DG2:DC11_A A 2 ? A 11 ? 19 1 1 A DG 3 1_555 A DC 10 7_555 -0.296 -0.104 0.449 17.668 -5.018 -1.038 3 A_DG3:DC10_A A 3 ? A 10 ? 19 1 1 A DC 1 1_555 A DG 12 1_555 0.212 -0.238 0.489 -8.306 -8.404 -2.428 4 A_DC1:DG12_A A 1 ? A 12 ? 19 1 1 A DG 2 1_555 A DC 11 1_555 -0.165 -0.205 0.049 4.493 2.404 -2.532 5 A_DG2:DC11_A A 2 ? A 11 ? 19 1 1 A DG 3 1_555 A DC 10 1_555 -0.296 -0.104 0.449 17.668 -5.018 -1.038 6 A_DG3:DC10_A A 3 ? A 10 ? 19 1 1 A DA 5 1_555 A DT 8 7_555 0.016 -0.078 0.120 -2.520 5.812 6.029 7 A_DA5:DT8_A A 5 ? A 8 ? 20 1 1 A DA 6 1_555 A DT 7 7_555 0.029 -0.123 0.281 10.049 -8.199 0.665 8 A_DA6:DT7_A A 6 ? A 7 ? 20 1 1 A DT 7 1_555 A DA 6 7_555 -0.029 -0.123 0.281 -10.049 -8.199 0.665 9 A_DT7:DA6_A A 7 ? A 6 ? 20 1 1 A DT 8 1_555 A DA 5 7_555 -0.016 -0.078 0.120 2.520 5.812 6.029 10 A_DT8:DA5_A A 8 ? A 5 ? 20 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 12 7_555 A DG 2 1_555 A DC 11 7_555 1.076 2.308 3.244 8.295 3.622 37.952 2.995 -0.550 3.589 5.475 -12.538 38.977 1 AA_DC1DG2:DC11DG12_AA A 1 ? A 12 ? A 2 ? A 11 ? 1 A DG 2 1_555 A DC 11 7_555 A DG 3 1_555 A DC 10 7_555 -0.355 2.520 3.328 -4.789 7.247 35.368 2.924 -0.166 3.769 11.710 7.739 36.386 2 AA_DG2DG3:DC10DC11_AA A 2 ? A 11 ? A 3 ? A 10 ? 1 A DC 1 1_555 A DG 12 1_555 A DG 2 1_555 A DC 11 1_555 1.076 2.308 3.244 8.295 3.622 37.952 2.995 -0.550 3.589 5.475 -12.538 38.977 3 AA_DC1DG2:DC11DG12_AA A 1 ? A 12 ? A 2 ? A 11 ? 1 A DG 2 1_555 A DC 11 1_555 A DG 3 1_555 A DC 10 1_555 -0.355 2.520 3.328 -4.789 7.246 35.368 2.924 -0.166 3.769 11.710 7.739 36.386 4 AA_DG2DG3:DC10DC11_AA A 2 ? A 11 ? A 3 ? A 10 ? 1 A DA 5 1_555 A DT 8 7_555 A DA 6 1_555 A DT 7 7_555 -1.053 0.687 3.140 -0.242 1.385 32.228 0.998 1.854 3.173 2.494 0.435 32.258 5 AA_DA5DA6:DT7DT8_AA A 5 ? A 8 ? A 6 ? A 7 ? 1 A DA 6 1_555 A DT 7 7_555 A DT 7 1_555 A DA 6 7_555 0.000 -0.151 7.316 0.000 -11.884 30.682 4.316 0.000 6.898 -21.474 0.000 32.852 6 AA_DA6DT7:DA6DT7_AA A 6 ? A 7 ? A 7 ? A 6 ? 1 A DT 7 1_555 A DA 6 7_555 A DT 8 1_555 A DA 5 7_555 1.053 0.687 3.140 0.242 1.385 32.228 0.998 -1.854 3.173 2.494 -0.435 32.258 7 AA_DT7DT8:DA5DA6_AA A 7 ? A 6 ? A 8 ? A 5 ? # _atom_sites.entry_id 2O1I _atom_sites.fract_transf_matrix[1][1] 0.025813 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025813 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017373 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P RH # loop_