data_2O1R # _entry.id 2O1R # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 2O1R RCSB RCSB040577 WWPDB D_1000040577 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2010-01-19 _pdbx_database_PDB_obs_spr.pdb_id 3LAE _pdbx_database_PDB_obs_spr.replace_pdb_id 2O1R _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id APC85784.2 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 2O1R _pdbx_database_status.recvd_initial_deposition_date 2006-11-29 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tan, K.' 1 'Li, H.' 2 'Bargassa, M.' 3 'Clancy, S.' 4 'Joachimiak, A.' 5 'Midwest Center for Structural Genomics (MCSG)' 6 # _citation.id primary _citation.title 'The crystal structure of a conserved putative protein from Haemophilus influenzae Rd KW20' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Tan, K.' 1 primary 'Li, H.' 2 primary 'Bargassa, M.' 3 primary 'Clancy, S.' 4 primary 'Joachimiak, A.' 5 # _cell.entry_id 2O1R _cell.length_a 25.604 _cell.length_b 77.563 _cell.length_c 79.107 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 2O1R _symmetry.space_group_name_H-M 'C 2 2 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'UPF0053 protein HI0107' 9164.869 1 ? ? 'Residues 343-420' ? 2 polymer syn 'Unknown peptide fragment' 335.399 1 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 12 ? ? ? ? 4 non-polymer syn 'DI(HYDROXYETHYL)ETHER' 106.120 1 ? ? ? ? 5 water nat water 18.015 61 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no yes ;SNAIQQSDGS(MSE)IIDGSANLRDLNK(MSE)FNWELDTEDARTFNGLILEHLEEIPDEGTICEIDGLLITILEVGDN (MSE)IKQAKVVKL ; ;SNAIQQSDGSMIIDGSANLRDLNKMFNWELDTEDARTFNGLILEHLEEIPDEGTICEIDGLLITILEVGDNMIKQAKVVK L ; A APC85784.2 2 'polypeptide(L)' no no IFG IFG X ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 SER n 1 2 ASN n 1 3 ALA n 1 4 ILE n 1 5 GLN n 1 6 GLN n 1 7 SER n 1 8 ASP n 1 9 GLY n 1 10 SER n 1 11 MSE n 1 12 ILE n 1 13 ILE n 1 14 ASP n 1 15 GLY n 1 16 SER n 1 17 ALA n 1 18 ASN n 1 19 LEU n 1 20 ARG n 1 21 ASP n 1 22 LEU n 1 23 ASN n 1 24 LYS n 1 25 MSE n 1 26 PHE n 1 27 ASN n 1 28 TRP n 1 29 GLU n 1 30 LEU n 1 31 ASP n 1 32 THR n 1 33 GLU n 1 34 ASP n 1 35 ALA n 1 36 ARG n 1 37 THR n 1 38 PHE n 1 39 ASN n 1 40 GLY n 1 41 LEU n 1 42 ILE n 1 43 LEU n 1 44 GLU n 1 45 HIS n 1 46 LEU n 1 47 GLU n 1 48 GLU n 1 49 ILE n 1 50 PRO n 1 51 ASP n 1 52 GLU n 1 53 GLY n 1 54 THR n 1 55 ILE n 1 56 CYS n 1 57 GLU n 1 58 ILE n 1 59 ASP n 1 60 GLY n 1 61 LEU n 1 62 LEU n 1 63 ILE n 1 64 THR n 1 65 ILE n 1 66 LEU n 1 67 GLU n 1 68 VAL n 1 69 GLY n 1 70 ASP n 1 71 ASN n 1 72 MSE n 1 73 ILE n 1 74 LYS n 1 75 GLN n 1 76 ALA n 1 77 LYS n 1 78 VAL n 1 79 VAL n 1 80 LYS n 1 81 LEU n 2 1 ILE n 2 2 PHE n 2 3 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Haemophilus _entity_src_gen.pdbx_gene_src_gene HI0107 _entity_src_gen.gene_src_species 'Haemophilus influenzae' _entity_src_gen.gene_src_strain 'Rd KW20' _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Haemophilus influenzae Rd KW20' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 71421 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 511693 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain BL21 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pMCSG19 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'Peptide fragment of unknown source, its sequence has been assigned according to electron density' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP Y107_HAEIN Q57017 1 IQQSDGSMIIDGSANLRDLNKMFNWELDTEDARTFNGLILEHLEEIPDEGTICEIDGLLITILEVGDNMIKQAKVVKL 343 ? 2 PDB 2O1R 2O1R 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 2O1R A 4 ? 81 ? Q57017 343 ? 420 ? 1 78 2 2 2O1R X 1 ? 3 ? 2O1R 1 ? 3 ? 1 3 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 2O1R SER A 1 ? UNP Q57017 ? ? 'CLONING ARTIFACT' -2 1 1 2O1R ASN A 2 ? UNP Q57017 ? ? 'CLONING ARTIFACT' -1 2 1 2O1R ALA A 3 ? UNP Q57017 ? ? 'CLONING ARTIFACT' 0 3 1 2O1R MSE A 11 ? UNP Q57017 MET 350 'MODIFIED RESIDUE' 8 4 1 2O1R MSE A 25 ? UNP Q57017 MET 364 'MODIFIED RESIDUE' 22 5 1 2O1R MSE A 72 ? UNP Q57017 MET 411 'MODIFIED RESIDUE' 69 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PEG non-polymer . 'DI(HYDROXYETHYL)ETHER' ? 'C4 H10 O3' 106.120 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 2O1R _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.07 _exptl_crystal.density_percent_sol 40.49 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.pdbx_details '0.4M NaH2PO4, 1.6M K2HPO4, 0.1M Imidazole, 0.2M NaCl, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315' _diffrn_detector.pdbx_collection_date 2006-07-30 _diffrn_detector.details mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Si 111 crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97929 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 19-ID' _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 19-ID _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97929 # _reflns.entry_id 2O1R _reflns.observed_criterion_sigma_F 0 _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.50 _reflns.d_resolution_low 27.69 _reflns.number_all 12960 _reflns.number_obs 12960 _reflns.percent_possible_obs 99.8 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 41.0 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.6 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.50 _reflns_shell.d_res_low 1.52 _reflns_shell.percent_possible_all 99.5 _reflns_shell.Rmerge_I_obs 0.529 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs 2.86 _reflns_shell.pdbx_redundancy 5.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 414 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 2O1R _refine.ls_number_reflns_obs 11828 _refine.ls_number_reflns_all 11828 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 27.69 _refine.ls_d_res_high 1.52 _refine.ls_percent_reflns_obs 99.77 _refine.ls_R_factor_obs 0.17618 _refine.ls_R_factor_all 0.17618 _refine.ls_R_factor_R_work 0.17452 _refine.ls_R_factor_R_free 0.20774 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 625 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.955 _refine.correlation_coeff_Fo_to_Fc_free 0.948 _refine.B_iso_mean 21.775 _refine.aniso_B[1][1] 0.02 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] -0.02 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.20 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.123 _refine.pdbx_overall_ESU_R_Free 0.087 _refine.overall_SU_ML 0.045 _refine.overall_SU_B 2.582 _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 741 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 55 _refine_hist.number_atoms_solvent 61 _refine_hist.number_atoms_total 857 _refine_hist.d_res_high 1.52 _refine_hist.d_res_low 27.69 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function r_bond_refined_d 0.028 0.022 ? 801 'X-RAY DIFFRACTION' ? r_bond_other_d ? ? ? ? 'X-RAY DIFFRACTION' ? r_angle_refined_deg 2.285 2.003 ? 1075 'X-RAY DIFFRACTION' ? r_angle_other_deg ? ? ? ? 'X-RAY DIFFRACTION' ? r_dihedral_angle_1_deg 7.677 5.000 ? 109 'X-RAY DIFFRACTION' ? r_dihedral_angle_2_deg 43.630 27.500 ? 36 'X-RAY DIFFRACTION' ? r_dihedral_angle_3_deg 15.590 15.000 ? 151 'X-RAY DIFFRACTION' ? r_dihedral_angle_4_deg 20.568 15.000 ? 2 'X-RAY DIFFRACTION' ? r_chiral_restr 0.145 0.200 ? 126 'X-RAY DIFFRACTION' ? r_gen_planes_refined 0.010 0.020 ? 575 'X-RAY DIFFRACTION' ? r_gen_planes_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbd_refined 0.321 0.200 ? 435 'X-RAY DIFFRACTION' ? r_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_nbtor_refined 0.325 0.200 ? 570 'X-RAY DIFFRACTION' ? r_nbtor_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_refined 0.132 0.200 ? 45 'X-RAY DIFFRACTION' ? r_xyhbond_nbd_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_vdw_refined 0.347 0.200 ? 88 'X-RAY DIFFRACTION' ? r_symmetry_vdw_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_hbond_refined 0.195 0.200 ? 23 'X-RAY DIFFRACTION' ? r_symmetry_hbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_refined ? ? ? ? 'X-RAY DIFFRACTION' ? r_symmetry_metal_ion_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcbond_it 2.903 1.500 ? 491 'X-RAY DIFFRACTION' ? r_mcbond_other ? ? ? ? 'X-RAY DIFFRACTION' ? r_mcangle_it 3.923 2.000 ? 786 'X-RAY DIFFRACTION' ? r_scbond_it 5.610 3.000 ? 339 'X-RAY DIFFRACTION' ? r_scangle_it 7.223 4.500 ? 280 'X-RAY DIFFRACTION' ? r_rigid_bond_restr 3.309 3.000 ? 830 'X-RAY DIFFRACTION' ? r_sphericity_free 11.630 3.000 ? 62 'X-RAY DIFFRACTION' ? r_sphericity_bonded 7.021 3.000 ? 794 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.52 _refine_ls_shell.d_res_low 1.56 _refine_ls_shell.number_reflns_R_work 847 _refine_ls_shell.R_factor_R_work 0.153 _refine_ls_shell.percent_reflns_obs 98.66 _refine_ls_shell.R_factor_R_free 0.266 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 39 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs 886 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 2O1R _struct.title 'Structural Genomics, the crystal structure of a conserved putative protein from Haemophilus influenzae Rd KW20' _struct.pdbx_descriptor 'UPF0053 protein HI0107, Unknown peptide fragment' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 2O1R _struct_keywords.pdbx_keywords 'MEMBRANE PROTEIN' _struct_keywords.text ;APC85784.2, conserved putative protein, Haemophilus influenzae Rd KW20, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, MEMBRANE PROTEIN ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 3 ? J N N 3 ? K N N 3 ? L N N 3 ? M N N 3 ? N N N 4 ? O N N 3 ? P N N 5 ? Q N N 5 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 18 ? ASN A 27 ? ASN A 15 ASN A 24 1 ? 10 HELX_P HELX_P2 2 THR A 37 ? LEU A 46 ? THR A 34 LEU A 43 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A SER 10 C ? ? ? 1_555 A MSE 11 N ? ? A SER 7 A MSE 8 1_555 ? ? ? ? ? ? ? 1.322 ? covale2 covale ? ? A MSE 11 C ? ? ? 1_555 A ILE 12 N ? ? A MSE 8 A ILE 9 1_555 ? ? ? ? ? ? ? 1.328 ? covale3 covale ? ? A LYS 24 C ? ? ? 1_555 A MSE 25 N A ? A LYS 21 A MSE 22 1_555 ? ? ? ? ? ? ? 1.345 ? covale4 covale ? ? A LYS 24 C ? ? ? 1_555 A MSE 25 N B ? A LYS 21 A MSE 22 1_555 ? ? ? ? ? ? ? 1.332 ? covale5 covale ? ? A MSE 25 C A ? ? 1_555 A PHE 26 N ? ? A MSE 22 A PHE 23 1_555 ? ? ? ? ? ? ? 1.335 ? covale6 covale ? ? A MSE 25 C B ? ? 1_555 A PHE 26 N ? ? A MSE 22 A PHE 23 1_555 ? ? ? ? ? ? ? 1.324 ? covale7 covale ? ? A ASN 71 C ? ? ? 1_555 A MSE 72 N B ? A ASN 68 A MSE 69 1_555 ? ? ? ? ? ? ? 1.330 ? covale8 covale ? ? A ASN 71 C ? ? ? 1_555 A MSE 72 N A ? A ASN 68 A MSE 69 1_555 ? ? ? ? ? ? ? 1.346 ? covale9 covale ? ? A MSE 72 C B ? ? 1_555 A ILE 73 N ? ? A MSE 69 A ILE 70 1_555 ? ? ? ? ? ? ? 1.331 ? covale10 covale ? ? A MSE 72 C A ? ? 1_555 A ILE 73 N ? ? A MSE 69 A ILE 70 1_555 ? ? ? ? ? ? ? 1.338 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 5 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ALA A 3 ? GLN A 5 ? ALA A 0 GLN A 2 A 2 MSE A 11 ? ASP A 14 ? MSE A 8 ASP A 11 A 3 MSE A 72 ? LYS A 80 ? MSE A 69 LYS A 77 A 4 LEU A 61 ? GLY A 69 ? LEU A 58 GLY A 66 A 5 ILE A 55 ? ILE A 58 ? ILE A 52 ILE A 55 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 4 ? N ILE A 1 O ILE A 12 ? O ILE A 9 A 2 3 N MSE A 11 ? N MSE A 8 O VAL A 78 ? O VAL A 75 A 3 4 O VAL A 79 ? O VAL A 76 N LEU A 62 ? N LEU A 59 A 4 5 O ILE A 63 ? O ILE A 60 N CYS A 56 ? N CYS A 53 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 201' AC2 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO A 202' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE EDO A 203' AC4 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE EDO A 204' AC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 205' AC6 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 206' AC7 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE EDO X 207' AC8 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE EDO A 208' AC9 Software ? ? ? ? 7 'BINDING SITE FOR RESIDUE EDO A 209' BC1 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE EDO A 210' BC2 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 211' BC3 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 212' BC4 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PEG A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 ASP A 31 ? ASP A 28 . ? 1_555 ? 2 AC1 6 LEU A 41 ? LEU A 38 . ? 1_555 ? 3 AC1 6 HIS A 45 ? HIS A 42 . ? 1_555 ? 4 AC1 6 ASP A 59 ? ASP A 56 . ? 1_555 ? 5 AC1 6 ASP A 70 ? ASP A 67 . ? 1_455 ? 6 AC1 6 LYS A 74 ? LYS A 71 . ? 1_455 ? 7 AC2 5 ASN A 18 ? ASN A 15 . ? 1_555 ? 8 AC2 5 ARG A 20 ? ARG A 17 . ? 1_555 ? 9 AC2 5 ASP A 21 ? ASP A 18 . ? 1_555 ? 10 AC2 5 EDO F . ? EDO A 204 . ? 1_555 ? 11 AC2 5 HOH P . ? HOH A 236 . ? 1_555 ? 12 AC3 3 GLY A 69 ? GLY A 66 . ? 1_455 ? 13 AC3 3 ASP A 70 ? ASP A 67 . ? 1_455 ? 14 AC3 3 EDO H . ? EDO A 206 . ? 1_455 ? 15 AC4 7 ASN A 18 ? ASN A 15 . ? 1_555 ? 16 AC4 7 ARG A 20 ? ARG A 17 . ? 1_555 ? 17 AC4 7 ARG A 36 ? ARG A 33 . ? 1_555 ? 18 AC4 7 ARG A 36 ? ARG A 33 . ? 3_656 ? 19 AC4 7 EDO D . ? EDO A 202 . ? 1_555 ? 20 AC4 7 HOH P . ? HOH A 219 . ? 3_656 ? 21 AC4 7 HOH P . ? HOH A 236 . ? 1_555 ? 22 AC5 6 GLY A 9 ? GLY A 6 . ? 1_555 ? 23 AC5 6 SER A 10 ? SER A 7 . ? 1_555 ? 24 AC5 6 MSE A 11 ? MSE A 8 . ? 1_555 ? 25 AC5 6 VAL A 78 ? VAL A 75 . ? 1_555 ? 26 AC5 6 VAL A 79 ? VAL A 76 . ? 1_555 ? 27 AC5 6 LYS A 80 ? LYS A 77 . ? 1_555 ? 28 AC6 6 ILE A 49 ? ILE A 46 . ? 1_555 ? 29 AC6 6 VAL A 68 ? VAL A 65 . ? 1_555 ? 30 AC6 6 GLY A 69 ? GLY A 66 . ? 1_555 ? 31 AC6 6 ASP A 70 ? ASP A 67 . ? 1_555 ? 32 AC6 6 ASN A 71 ? ASN A 68 . ? 1_555 ? 33 AC6 6 EDO E . ? EDO A 203 . ? 1_655 ? 34 AC7 7 GLN A 5 ? GLN A 2 . ? 4_566 ? 35 AC7 7 GLN A 6 ? GLN A 3 . ? 4_566 ? 36 AC7 7 SER A 7 ? SER A 4 . ? 4_566 ? 37 AC7 7 ASP A 21 ? ASP A 18 . ? 1_555 ? 38 AC7 7 EDO J . ? EDO A 209 . ? 4_566 ? 39 AC7 7 PHE B 2 ? PHE X 2 . ? 1_555 ? 40 AC7 7 GLY B 3 ? GLY X 3 . ? 1_555 ? 41 AC8 7 GLY A 15 ? GLY A 12 . ? 1_555 ? 42 AC8 7 SER A 16 ? SER A 13 . ? 1_555 ? 43 AC8 7 GLU A 33 ? GLU A 30 . ? 3_656 ? 44 AC8 7 ASP A 34 ? ASP A 31 . ? 3_656 ? 45 AC8 7 PEG N . ? PEG A 101 . ? 1_655 ? 46 AC8 7 HOH P . ? HOH A 266 . ? 1_555 ? 47 AC8 7 HOH P . ? HOH A 272 . ? 1_555 ? 48 AC9 7 ILE A 4 ? ILE A 1 . ? 1_555 ? 49 AC9 7 GLN A 5 ? GLN A 2 . ? 1_555 ? 50 AC9 7 GLN A 6 ? GLN A 3 . ? 1_555 ? 51 AC9 7 SER A 7 ? SER A 4 . ? 1_555 ? 52 AC9 7 HOH P . ? HOH A 261 . ? 1_555 ? 53 AC9 7 ILE B 1 ? ILE X 1 . ? 4_566 ? 54 AC9 7 EDO O . ? EDO X 207 . ? 4_566 ? 55 BC1 8 SER A 1 ? SER A -2 . ? 1_555 ? 56 BC1 8 SER A 16 ? SER A 13 . ? 1_555 ? 57 BC1 8 ASN A 18 ? ASN A 15 . ? 1_555 ? 58 BC1 8 ASP A 21 ? ASP A 18 . ? 1_555 ? 59 BC1 8 HOH P . ? HOH A 229 . ? 1_555 ? 60 BC1 8 PHE B 2 ? PHE X 2 . ? 1_555 ? 61 BC1 8 GLY B 3 ? GLY X 3 . ? 1_555 ? 62 BC1 8 HOH Q . ? HOH X 24 . ? 1_555 ? 63 BC2 6 ILE A 12 ? ILE A 9 . ? 1_555 ? 64 BC2 6 GLN A 75 ? GLN A 72 . ? 1_555 ? 65 BC2 6 LEU A 81 ? LEU A 78 . ? 1_655 ? 66 BC2 6 HOH P . ? HOH A 222 . ? 8_556 ? 67 BC2 6 HOH P . ? HOH A 262 . ? 1_555 ? 68 BC2 6 HOH P . ? HOH A 268 . ? 1_655 ? 69 BC3 4 ASP A 31 ? ASP A 28 . ? 1_555 ? 70 BC3 4 GLU A 33 ? GLU A 30 . ? 1_555 ? 71 BC3 4 ASP A 34 ? ASP A 31 . ? 1_555 ? 72 BC3 4 MSE A 72 ? MSE A 69 . ? 3_656 ? 73 BC4 4 ASP A 31 ? ASP A 28 . ? 1_555 ? 74 BC4 4 THR A 32 ? THR A 29 . ? 1_555 ? 75 BC4 4 GLU A 33 ? GLU A 30 . ? 1_555 ? 76 BC4 4 EDO I . ? EDO A 208 . ? 1_455 ? # _database_PDB_matrix.entry_id 2O1R _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 2O1R _atom_sites.fract_transf_matrix[1][1] 0.039056 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.012893 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012641 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 SER 1 -2 -2 SER SER A . n A 1 2 ASN 2 -1 -1 ASN ASN A . n A 1 3 ALA 3 0 0 ALA ALA A . n A 1 4 ILE 4 1 1 ILE ILE A . n A 1 5 GLN 5 2 2 GLN GLN A . n A 1 6 GLN 6 3 3 GLN GLN A . n A 1 7 SER 7 4 4 SER SER A . n A 1 8 ASP 8 5 5 ASP ASP A . n A 1 9 GLY 9 6 6 GLY GLY A . n A 1 10 SER 10 7 7 SER SER A . n A 1 11 MSE 11 8 8 MSE MSE A . n A 1 12 ILE 12 9 9 ILE ILE A . n A 1 13 ILE 13 10 10 ILE ILE A . n A 1 14 ASP 14 11 11 ASP ASP A . n A 1 15 GLY 15 12 12 GLY GLY A . n A 1 16 SER 16 13 13 SER SER A . n A 1 17 ALA 17 14 14 ALA ALA A . n A 1 18 ASN 18 15 15 ASN ASN A . n A 1 19 LEU 19 16 16 LEU LEU A . n A 1 20 ARG 20 17 17 ARG ARG A . n A 1 21 ASP 21 18 18 ASP ASP A . n A 1 22 LEU 22 19 19 LEU LEU A . n A 1 23 ASN 23 20 20 ASN ASN A . n A 1 24 LYS 24 21 21 LYS LYS A . n A 1 25 MSE 25 22 22 MSE MSE A . n A 1 26 PHE 26 23 23 PHE PHE A . n A 1 27 ASN 27 24 24 ASN ASN A . n A 1 28 TRP 28 25 25 TRP TRP A . n A 1 29 GLU 29 26 26 GLU GLU A . n A 1 30 LEU 30 27 27 LEU LEU A . n A 1 31 ASP 31 28 28 ASP ASP A . n A 1 32 THR 32 29 29 THR THR A . n A 1 33 GLU 33 30 30 GLU GLU A . n A 1 34 ASP 34 31 31 ASP ASP A . n A 1 35 ALA 35 32 32 ALA ALA A . n A 1 36 ARG 36 33 33 ARG ARG A . n A 1 37 THR 37 34 34 THR THR A . n A 1 38 PHE 38 35 35 PHE PHE A . n A 1 39 ASN 39 36 36 ASN ASN A . n A 1 40 GLY 40 37 37 GLY GLY A . n A 1 41 LEU 41 38 38 LEU LEU A . n A 1 42 ILE 42 39 39 ILE ILE A . n A 1 43 LEU 43 40 40 LEU LEU A . n A 1 44 GLU 44 41 41 GLU GLU A . n A 1 45 HIS 45 42 42 HIS HIS A . n A 1 46 LEU 46 43 43 LEU LEU A . n A 1 47 GLU 47 44 44 GLU GLU A . n A 1 48 GLU 48 45 45 GLU GLU A . n A 1 49 ILE 49 46 46 ILE ILE A . n A 1 50 PRO 50 47 47 PRO PRO A . n A 1 51 ASP 51 48 48 ASP ASP A . n A 1 52 GLU 52 49 49 GLU GLU A . n A 1 53 GLY 53 50 50 GLY GLY A . n A 1 54 THR 54 51 51 THR THR A . n A 1 55 ILE 55 52 52 ILE ILE A . n A 1 56 CYS 56 53 53 CYS CYS A . n A 1 57 GLU 57 54 54 GLU GLU A . n A 1 58 ILE 58 55 55 ILE ILE A . n A 1 59 ASP 59 56 56 ASP ASP A . n A 1 60 GLY 60 57 57 GLY GLY A . n A 1 61 LEU 61 58 58 LEU LEU A . n A 1 62 LEU 62 59 59 LEU LEU A . n A 1 63 ILE 63 60 60 ILE ILE A . n A 1 64 THR 64 61 61 THR THR A . n A 1 65 ILE 65 62 62 ILE ILE A . n A 1 66 LEU 66 63 63 LEU LEU A . n A 1 67 GLU 67 64 64 GLU GLU A . n A 1 68 VAL 68 65 65 VAL VAL A . n A 1 69 GLY 69 66 66 GLY GLY A . n A 1 70 ASP 70 67 67 ASP ASP A . n A 1 71 ASN 71 68 68 ASN ASN A . n A 1 72 MSE 72 69 69 MSE MSE A . n A 1 73 ILE 73 70 70 ILE ILE A . n A 1 74 LYS 74 71 71 LYS LYS A . n A 1 75 GLN 75 72 72 GLN GLN A . n A 1 76 ALA 76 73 73 ALA ALA A . n A 1 77 LYS 77 74 74 LYS LYS A . n A 1 78 VAL 78 75 75 VAL VAL A . n A 1 79 VAL 79 76 76 VAL VAL A . n A 1 80 LYS 80 77 77 LYS LYS A . n A 1 81 LEU 81 78 78 LEU LEU A . n B 2 1 ILE 1 1 1 ILE ILE X . n B 2 2 PHE 2 2 2 PHE PHE X . n B 2 3 GLY 3 3 3 GLY GLY X . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Midwest Center for Structural Genomics' _pdbx_SG_project.initial_of_center MCSG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 EDO 1 201 1 EDO EDO A . D 3 EDO 1 202 2 EDO EDO A . E 3 EDO 1 203 3 EDO EDO A . F 3 EDO 1 204 4 EDO EDO A . G 3 EDO 1 205 5 EDO EDO A . H 3 EDO 1 206 6 EDO EDO A . I 3 EDO 1 208 8 EDO EDO A . J 3 EDO 1 209 9 EDO EDO A . K 3 EDO 1 210 10 EDO EDO A . L 3 EDO 1 211 11 EDO EDO A . M 3 EDO 1 212 12 EDO EDO A . N 4 PEG 1 101 1 PEG PEG A . O 3 EDO 1 207 7 EDO EDO X . P 5 HOH 1 213 1 HOH HOH A . P 5 HOH 2 214 2 HOH HOH A . P 5 HOH 3 215 3 HOH HOH A . P 5 HOH 4 216 4 HOH HOH A . P 5 HOH 5 217 5 HOH HOH A . P 5 HOH 6 218 6 HOH HOH A . P 5 HOH 7 219 7 HOH HOH A . P 5 HOH 8 220 8 HOH HOH A . P 5 HOH 9 221 9 HOH HOH A . P 5 HOH 10 222 10 HOH HOH A . P 5 HOH 11 223 11 HOH HOH A . P 5 HOH 12 224 12 HOH HOH A . P 5 HOH 13 225 13 HOH HOH A . P 5 HOH 14 226 14 HOH HOH A . P 5 HOH 15 227 15 HOH HOH A . P 5 HOH 16 228 16 HOH HOH A . P 5 HOH 17 229 17 HOH HOH A . P 5 HOH 18 230 18 HOH HOH A . P 5 HOH 19 231 19 HOH HOH A . P 5 HOH 20 232 20 HOH HOH A . P 5 HOH 21 233 21 HOH HOH A . P 5 HOH 22 234 22 HOH HOH A . P 5 HOH 23 235 23 HOH HOH A . P 5 HOH 24 236 25 HOH HOH A . P 5 HOH 25 237 26 HOH HOH A . P 5 HOH 26 238 27 HOH HOH A . P 5 HOH 27 239 28 HOH HOH A . P 5 HOH 28 240 29 HOH HOH A . P 5 HOH 29 241 30 HOH HOH A . P 5 HOH 30 242 31 HOH HOH A . P 5 HOH 31 243 32 HOH HOH A . P 5 HOH 32 244 33 HOH HOH A . P 5 HOH 33 245 34 HOH HOH A . P 5 HOH 34 246 35 HOH HOH A . P 5 HOH 35 247 36 HOH HOH A . P 5 HOH 36 248 37 HOH HOH A . P 5 HOH 37 249 38 HOH HOH A . P 5 HOH 38 250 39 HOH HOH A . P 5 HOH 39 251 40 HOH HOH A . P 5 HOH 40 252 41 HOH HOH A . P 5 HOH 41 253 42 HOH HOH A . P 5 HOH 42 254 43 HOH HOH A . P 5 HOH 43 255 44 HOH HOH A . P 5 HOH 44 256 45 HOH HOH A . P 5 HOH 45 257 46 HOH HOH A . P 5 HOH 46 258 47 HOH HOH A . P 5 HOH 47 259 48 HOH HOH A . P 5 HOH 48 260 49 HOH HOH A . P 5 HOH 49 261 50 HOH HOH A . P 5 HOH 50 262 51 HOH HOH A . P 5 HOH 51 263 52 HOH HOH A . P 5 HOH 52 264 53 HOH HOH A . P 5 HOH 53 265 54 HOH HOH A . P 5 HOH 54 266 55 HOH HOH A . P 5 HOH 55 267 56 HOH HOH A . P 5 HOH 56 268 57 HOH HOH A . P 5 HOH 57 269 58 HOH HOH A . P 5 HOH 58 270 59 HOH HOH A . P 5 HOH 59 271 60 HOH HOH A . P 5 HOH 60 272 61 HOH HOH A . Q 5 HOH 1 24 24 HOH HOH X . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 11 A MSE 8 ? MET SELENOMETHIONINE 2 A MSE 25 A MSE 22 ? MET SELENOMETHIONINE 3 A MSE 72 A MSE 69 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2006-12-26 2 'Structure model' 1 1 2008-05-01 3 'Structure model' 1 2 2010-01-19 4 'Structure model' 1 3 2011-07-13 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 3 'Structure model' repository Obsolete ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 4 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal REFMAC refinement 5.2.0019 ? 1 SBC-Collect 'data collection' . ? 2 HKL-3000 'data reduction' . ? 3 HKL-3000 'data scaling' . ? 4 HKL-3000 phasing . ? 5 # _pdbx_database_remark.id 300 _pdbx_database_remark.text ; BIOMOLECULE: 1 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT WHICH CONSISTS OF 2 CHAIN(S). AUTHORS STATE THAT THE BIOLOGICAL UNIT OF THIS PROTEIN IS UNKNOWN. ; # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 SE A MSE 22 ? A CE A MSE 22 ? A 2.396 1.950 0.446 0.059 N 2 1 CD A GLU 41 ? ? OE1 A GLU 41 ? ? 1.169 1.252 -0.083 0.011 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ASP 11 ? ? CG A ASP 11 ? ? OD2 A ASP 11 ? ? 112.08 118.30 -6.22 0.90 N 2 1 CG A MSE 22 ? A SE A MSE 22 ? A CE A MSE 22 ? A 114.61 98.90 15.71 2.20 N 3 1 CG A MSE 69 ? A SE A MSE 69 ? A CE A MSE 69 ? A 112.70 98.90 13.80 2.20 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 45 ? A -176.73 142.86 2 1 GLU A 45 ? B -156.37 -148.93 3 1 ASN A 68 ? ? 40.71 23.10 # _pdbx_unobs_or_zero_occ_atoms.id 1 _pdbx_unobs_or_zero_occ_atoms.PDB_model_num 1 _pdbx_unobs_or_zero_occ_atoms.polymer_flag Y _pdbx_unobs_or_zero_occ_atoms.occupancy_flag 0 _pdbx_unobs_or_zero_occ_atoms.auth_asym_id A _pdbx_unobs_or_zero_occ_atoms.auth_comp_id MSE _pdbx_unobs_or_zero_occ_atoms.auth_seq_id 22 _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code ? _pdbx_unobs_or_zero_occ_atoms.auth_atom_id SE _pdbx_unobs_or_zero_occ_atoms.label_alt_id A _pdbx_unobs_or_zero_occ_atoms.label_asym_id A _pdbx_unobs_or_zero_occ_atoms.label_comp_id MSE _pdbx_unobs_or_zero_occ_atoms.label_seq_id 25 _pdbx_unobs_or_zero_occ_atoms.label_atom_id SE # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 1,2-ETHANEDIOL EDO 4 'DI(HYDROXYETHYL)ETHER' PEG 5 water HOH #