HEADER OXIDOREDUCTASE 29-NOV-06 2O1Z TITLE PLASMODIUM VIVAX RIBONUCLEOTIDE REDUCTASE SUBUNIT R2 (PV086155) COMPND MOL_ID: 1; COMPND 2 MOLECULE: RIBONUCLEOTIDE REDUCTASE SUBUNIT R2; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PLASMODIUM VIVAX; SOURCE 3 ORGANISM_COMMON: MALARIA PARASITE P. VIVAX; SOURCE 4 ORGANISM_TAXID: 5855; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21 ROSETTA-R3; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: P15-TEV-LIC DERIVED FROM PET15 KEYWDS SMALL SUBUNIT RIBONUCLEOTIDE REDUCTASE, OXIDOREDUCTASE, DNA KEYWDS 2 REPLICATION, R2, IRON, DIIRON, RADICAL, R2 SUBUNIT, METAL-BINDING, KEYWDS 3 RIBONUCLEOTIDE REDUCTASE, STRUCTURAL GENOMICS, STRUCTURAL GENOMICS KEYWDS 4 CONSORTIUM, SGC EXPDTA X-RAY DIFFRACTION AUTHOR A.DONG,W.TEMPEL,W.QIU,J.LEW,A.K.WERNIMONT,Y.H.LIN,A.HASSANALI, AUTHOR 2 M.MELONE,Y.ZHAO,P.NORDLUND,C.H.ARROWSMITH,A.M.EDWARDS,J.WEIGELT, AUTHOR 3 M.SUNDSTROM,A.BOCHKAREV,R.HUI,J.D.ARTZ,M.AMANI,STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (SGC) REVDAT 4 30-AUG-23 2O1Z 1 REMARK LINK REVDAT 3 18-OCT-17 2O1Z 1 REMARK REVDAT 2 24-FEB-09 2O1Z 1 VERSN REVDAT 1 12-DEC-06 2O1Z 0 JRNL AUTH A.DONG,W.TEMPEL,W.QIU,J.LEW,A.K.WERNIMONT,Y.H.LIN, JRNL AUTH 2 A.HASSANALI,M.MELONE,Y.ZHAO,P.NORDLUND,C.H.ARROWSMITH, JRNL AUTH 3 A.M.EDWARDS,J.WEIGELT,M.SUNDSTROM,A.BOCHKAREV,R.HUI, JRNL AUTH 4 J.D.ARTZ,M.AMANI JRNL TITL CRYSTAL STRUCTURE OF PLASMODIUM VIVAX RIBONUCLEOTIDE JRNL TITL 2 REDUCTASE SUBUNIT R2 (PV086155) JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 37.32 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 24635 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.218 REMARK 3 FREE R VALUE : 0.285 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 816 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.40 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.46 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1760 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.70 REMARK 3 BIN R VALUE (WORKING SET) : 0.2180 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.2570 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4411 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 4 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 38.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.39 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.84000 REMARK 3 B22 (A**2) : 2.72000 REMARK 3 B33 (A**2) : -0.88000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.451 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.298 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.215 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.835 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.881 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4518 ; 0.017 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6125 ; 1.197 ; 1.933 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 561 ; 6.442 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;36.459 ;24.634 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 722 ;18.603 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;18.606 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 681 ; 0.103 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3423 ; 0.007 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 2079 ; 0.213 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 3138 ; 0.309 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 200 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 33 ; 0.246 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 9 ; 0.371 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2925 ; 1.510 ; 2.000 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4493 ; 2.390 ; 3.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1868 ; 1.429 ; 2.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1632 ; 2.061 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 2O1Z COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-DEC-06. REMARK 100 THE DEPOSITION ID IS D_1000040585. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 19-NOV-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : SI REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25506 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.11200 REMARK 200 R SYM (I) : 0.11200 REMARK 200 FOR THE DATA SET : 7.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.45600 REMARK 200 R SYM FOR SHELL (I) : 0.45600 REMARK 200 FOR SHELL : 3.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER V. 1.3.2, SOLVE, RESOLVE REMARK 200 STARTING MODEL: PDB ENTRY 1HON REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.87 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.19 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30% PEG 2K MME, 0.15M POTASIUM REMARK 280 THIOCYANATE, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 38.07550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 51.92300 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.98900 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 51.92300 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 38.07550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.98900 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2690 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -40.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 1 REMARK 465 ASP A 2 REMARK 465 VAL A 3 REMARK 465 LEU A 4 REMARK 465 ASN A 5 REMARK 465 ILE A 6 REMARK 465 SER A 7 REMARK 465 LYS A 8 REMARK 465 ILE A 9 REMARK 465 PRO A 10 REMARK 465 ILE A 11 REMARK 465 PHE A 12 REMARK 465 SER A 13 REMARK 465 LYS A 14 REMARK 465 LYS A 15 REMARK 465 GLU A 16 REMARK 465 ASP A 98 REMARK 465 GLY A 99 REMARK 465 ILE A 100 REMARK 465 VAL A 101 REMARK 465 LEU A 102 REMARK 465 GLU A 103 REMARK 465 ASN A 104 REMARK 465 ALA B 1 REMARK 465 ASP B 2 REMARK 465 VAL B 3 REMARK 465 LEU B 4 REMARK 465 ASN B 5 REMARK 465 ILE B 6 REMARK 465 SER B 7 REMARK 465 LYS B 8 REMARK 465 ILE B 9 REMARK 465 PRO B 10 REMARK 465 ILE B 11 REMARK 465 PHE B 12 REMARK 465 SER B 13 REMARK 465 LYS B 14 REMARK 465 LYS B 15 REMARK 465 GLU B 16 REMARK 465 LYS B 17 REMARK 465 LYS B 18 REMARK 465 PHE B 19 REMARK 465 SER B 20 REMARK 465 ASP B 21 REMARK 465 LEU B 22 REMARK 465 GLN B 23 REMARK 465 LYS B 78 REMARK 465 LEU B 79 REMARK 465 VAL B 101 REMARK 465 LEU B 102 REMARK 465 GLU B 103 REMARK 465 ASP B 270 REMARK 465 LEU B 271 REMARK 465 ASP B 310 REMARK 465 LEU B 311 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 17 CG CD CE NZ REMARK 470 LYS A 18 CG CD CE NZ REMARK 470 PHE A 19 CG CD1 CD2 CE1 CE2 CZ REMARK 470 SER A 25 OG REMARK 470 ASN A 29 CG OD1 ND2 REMARK 470 LYS A 31 CD CE NZ REMARK 470 LYS A 35 CG CD CE NZ REMARK 470 THR A 37 OG1 CG2 REMARK 470 ASP A 38 CG OD1 OD2 REMARK 470 PHE A 40 CG CD1 CD2 CE1 CE2 CZ REMARK 470 LYS A 56 CG CD CE NZ REMARK 470 SER A 70 OG REMARK 470 SER A 71 OG REMARK 470 LEU A 73 CG CD1 CD2 REMARK 470 GLU A 77 CG CD OE1 OE2 REMARK 470 LEU A 105 CG CD1 CD2 REMARK 470 LYS A 108 CG CD CE NZ REMARK 470 ARG A 111 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 147 CG CD OE1 OE2 REMARK 470 LYS A 148 CG CD CE NZ REMARK 470 GLU A 158 CG CD OE1 OE2 REMARK 470 ASN A 159 CG OD1 ND2 REMARK 470 LEU A 168 CG CD1 CD2 REMARK 470 ASP A 176 CG OD1 OD2 REMARK 470 THR A 177 OG1 CG2 REMARK 470 LYS A 210 CE NZ REMARK 470 GLU A 240 CG CD OE1 OE2 REMARK 470 LYS A 253 CE NZ REMARK 470 ARG A 260 CZ NH1 NH2 REMARK 470 GLU A 265 CG CD OE1 OE2 REMARK 470 LEU A 271 CG CD1 CD2 REMARK 470 ASN A 307 CG OD1 ND2 REMARK 470 LEU A 311 CG CD1 CD2 REMARK 470 LYS B 24 CE NZ REMARK 470 LYS B 26 CG CD CE NZ REMARK 470 ASN B 29 CG OD1 ND2 REMARK 470 LYS B 35 CG CD CE NZ REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 THR B 37 OG1 CG2 REMARK 470 ASP B 38 CG OD1 OD2 REMARK 470 LYS B 56 CD CE NZ REMARK 470 SER B 60 OG REMARK 470 SER B 71 OG REMARK 470 ASP B 72 CG OD1 OD2 REMARK 470 LEU B 73 CG CD1 CD2 REMARK 470 LYS B 74 CG CD CE NZ REMARK 470 ASP B 75 CG OD1 OD2 REMARK 470 GLU B 77 CG CD OE1 OE2 REMARK 470 ASN B 80 CG OD1 ND2 REMARK 470 PHE B 93 CD1 CD2 CE1 CE2 CZ REMARK 470 SER B 97 OG REMARK 470 ILE B 100 CG1 CG2 CD1 REMARK 470 LYS B 145 CG CD CE NZ REMARK 470 ASP B 146 CG OD1 OD2 REMARK 470 GLU B 147 CG CD OE1 OE2 REMARK 470 LYS B 148 CG CD CE NZ REMARK 470 MET B 151 CG SD CE REMARK 470 LEU B 153 CD1 CD2 REMARK 470 ILE B 157 CG1 CD1 REMARK 470 GLU B 158 CG CD OE1 OE2 REMARK 470 ASN B 159 CG OD1 ND2 REMARK 470 ILE B 160 CG1 CG2 CD1 REMARK 470 LYS B 164 CG CD CE NZ REMARK 470 ASP B 176 CG OD1 OD2 REMARK 470 THR B 177 OG1 CG2 REMARK 470 LYS B 207 CD CE NZ REMARK 470 LEU B 211 CG CD1 CD2 REMARK 470 GLU B 219 CD OE1 OE2 REMARK 470 GLU B 246 CG CD OE1 OE2 REMARK 470 LYS B 253 CG CD CE NZ REMARK 470 ARG B 260 CZ NH1 NH2 REMARK 470 ILE B 263 CG1 CG2 CD1 REMARK 470 ILE B 272 CD1 REMARK 470 ASN B 275 CG OD1 ND2 REMARK 470 LYS B 303 CE NZ REMARK 470 ASN B 307 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 190 O HOH A 2075 2.09 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NH2 ARG A 277 OD2 ASP B 49 2554 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 178 175.85 -52.62 REMARK 500 PHE A 195 -7.33 70.86 REMARK 500 PHE A 262 -63.98 -104.75 REMARK 500 GLU A 265 -51.19 -153.79 REMARK 500 GLU B 158 33.87 -70.99 REMARK 500 ASN B 159 -7.17 -152.39 REMARK 500 ILE B 174 67.47 -106.75 REMARK 500 PHE B 195 -9.67 72.67 REMARK 500 LEU B 211 75.36 65.34 REMARK 500 PHE B 262 -71.47 -101.04 REMARK 500 GLU B 265 -71.04 -121.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A1000 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 191 OE1 REMARK 620 2 GLU A 225 OE1 152.3 REMARK 620 3 HIS A 228 ND1 94.9 92.7 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE B1001 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 129 OE2 REMARK 620 2 GLU B 191 OE1 117.9 REMARK 620 3 GLU B 225 OE2 143.5 93.7 REMARK 620 4 HIS B 228 ND1 108.4 92.4 86.4 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 1000 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE B 1001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 2001 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE UNX A 2002 REMARK 999 REMARK 999 SEQUENCE REMARK 999 CURRENTLY, THERE IS NO AMINOACID SEQUENCE DATABASE REMARK 999 REFERENCE AVAILABLE FOR THE PROTEIN DBREF 2O1Z A 1 311 UNP A5K1H0 A5K1H0_PLAVI 2 312 DBREF 2O1Z B 1 311 UNP A5K1H0 A5K1H0_PLAVI 2 312 SEQRES 1 A 311 ALA ASP VAL LEU ASN ILE SER LYS ILE PRO ILE PHE SER SEQRES 2 A 311 LYS LYS GLU LYS LYS PHE SER ASP LEU GLN LYS SER LYS SEQRES 3 A 311 GLU ALA ASN GLU LYS ILE LEU SER LYS GLU THR ASP ARG SEQRES 4 A 311 PHE THR LEU TYR PRO ILE LEU TYR PRO ASP VAL TRP ASP SEQRES 5 A 311 PHE TYR LYS LYS ALA GLU ALA SER PHE TRP THR ALA GLU SEQRES 6 A 311 GLU ILE ASP LEU SER SER ASP LEU LYS ASP PHE GLU LYS SEQRES 7 A 311 LEU ASN ASP ASN GLU LYS HIS PHE ILE LYS HIS VAL LEU SEQRES 8 A 311 ALA PHE PHE ALA ALA SER ASP GLY ILE VAL LEU GLU ASN SEQRES 9 A 311 LEU ALA SER LYS PHE LEU ARG GLN VAL LYS ILE THR GLU SEQRES 10 A 311 ALA LYS LYS PHE TYR ALA PHE GLN ILE ALA VAL GLU ASN SEQRES 11 A 311 ILE HIS SER GLU THR TYR SER LEU LEU ILE ASP ASN TYR SEQRES 12 A 311 ILE LYS ASP GLU LYS GLU ARG MET ASN LEU PHE HIS ALA SEQRES 13 A 311 ILE GLU ASN ILE PRO ALA VAL LYS ASN LYS ALA LEU TRP SEQRES 14 A 311 ALA ALA LYS TRP ILE ASN ASP THR ASN SER PHE ALA GLU SEQRES 15 A 311 ARG ILE VAL ALA ASN ALA CYS VAL GLU GLY ILE LEU PHE SEQRES 16 A 311 SER GLY SER PHE CYS ALA ILE PHE TRP PHE LYS LYS GLN SEQRES 17 A 311 ASN LYS LEU HIS GLY LEU THR PHE SER ASN GLU LEU ILE SEQRES 18 A 311 SER ARG ASP GLU GLY LEU HIS THR ASP PHE ASN CYS LEU SEQRES 19 A 311 ILE TYR SER LEU LEU GLU ASN LYS LEU PRO GLU GLU VAL SEQRES 20 A 311 VAL GLN ASN ILE VAL LYS GLU ALA VAL GLU VAL GLU ARG SEQRES 21 A 311 SER PHE ILE CYS GLU SER LEU PRO CYS ASP LEU ILE GLY SEQRES 22 A 311 MET ASN SER ARG LEU MET SER GLN TYR ILE GLU PHE VAL SEQRES 23 A 311 ALA ASP ARG LEU LEU GLU CYS LEU GLY SER PRO LYS ILE SEQRES 24 A 311 PHE HIS ALA LYS ASN PRO PHE ASN TRP MET ASP LEU SEQRES 1 B 311 ALA ASP VAL LEU ASN ILE SER LYS ILE PRO ILE PHE SER SEQRES 2 B 311 LYS LYS GLU LYS LYS PHE SER ASP LEU GLN LYS SER LYS SEQRES 3 B 311 GLU ALA ASN GLU LYS ILE LEU SER LYS GLU THR ASP ARG SEQRES 4 B 311 PHE THR LEU TYR PRO ILE LEU TYR PRO ASP VAL TRP ASP SEQRES 5 B 311 PHE TYR LYS LYS ALA GLU ALA SER PHE TRP THR ALA GLU SEQRES 6 B 311 GLU ILE ASP LEU SER SER ASP LEU LYS ASP PHE GLU LYS SEQRES 7 B 311 LEU ASN ASP ASN GLU LYS HIS PHE ILE LYS HIS VAL LEU SEQRES 8 B 311 ALA PHE PHE ALA ALA SER ASP GLY ILE VAL LEU GLU ASN SEQRES 9 B 311 LEU ALA SER LYS PHE LEU ARG GLN VAL LYS ILE THR GLU SEQRES 10 B 311 ALA LYS LYS PHE TYR ALA PHE GLN ILE ALA VAL GLU ASN SEQRES 11 B 311 ILE HIS SER GLU THR TYR SER LEU LEU ILE ASP ASN TYR SEQRES 12 B 311 ILE LYS ASP GLU LYS GLU ARG MET ASN LEU PHE HIS ALA SEQRES 13 B 311 ILE GLU ASN ILE PRO ALA VAL LYS ASN LYS ALA LEU TRP SEQRES 14 B 311 ALA ALA LYS TRP ILE ASN ASP THR ASN SER PHE ALA GLU SEQRES 15 B 311 ARG ILE VAL ALA ASN ALA CYS VAL GLU GLY ILE LEU PHE SEQRES 16 B 311 SER GLY SER PHE CYS ALA ILE PHE TRP PHE LYS LYS GLN SEQRES 17 B 311 ASN LYS LEU HIS GLY LEU THR PHE SER ASN GLU LEU ILE SEQRES 18 B 311 SER ARG ASP GLU GLY LEU HIS THR ASP PHE ASN CYS LEU SEQRES 19 B 311 ILE TYR SER LEU LEU GLU ASN LYS LEU PRO GLU GLU VAL SEQRES 20 B 311 VAL GLN ASN ILE VAL LYS GLU ALA VAL GLU VAL GLU ARG SEQRES 21 B 311 SER PHE ILE CYS GLU SER LEU PRO CYS ASP LEU ILE GLY SEQRES 22 B 311 MET ASN SER ARG LEU MET SER GLN TYR ILE GLU PHE VAL SEQRES 23 B 311 ALA ASP ARG LEU LEU GLU CYS LEU GLY SER PRO LYS ILE SEQRES 24 B 311 PHE HIS ALA LYS ASN PRO PHE ASN TRP MET ASP LEU HET FE A1000 1 HET UNX A2001 1 HET UNX A2002 1 HET FE B1001 1 HETNAM FE FE (III) ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 3 FE 2(FE 3+) FORMUL 4 UNX 2(X) FORMUL 7 HOH *161(H2 O) HELIX 1 1 LYS A 17 SER A 25 1 9 HELIX 2 2 LYS A 26 SER A 34 5 9 HELIX 3 3 TYR A 47 SER A 60 1 14 HELIX 4 4 THR A 63 ILE A 67 5 5 HELIX 5 5 LEU A 69 LEU A 79 1 11 HELIX 6 6 ASN A 80 SER A 97 1 18 HELIX 7 7 LEU A 105 VAL A 113 1 9 HELIX 8 8 ILE A 115 ILE A 144 1 30 HELIX 9 9 ASP A 146 GLU A 158 1 13 HELIX 10 10 ILE A 160 ILE A 174 1 15 HELIX 11 11 SER A 179 ILE A 193 1 15 HELIX 12 12 PHE A 195 GLN A 208 1 14 HELIX 13 13 LEU A 211 LEU A 238 1 28 HELIX 14 14 PRO A 244 SER A 261 1 18 HELIX 15 15 ASN A 275 LEU A 294 1 20 HELIX 16 16 TYR B 47 SER B 60 1 14 HELIX 17 17 THR B 63 ILE B 67 5 5 HELIX 18 18 LEU B 69 GLU B 77 1 9 HELIX 19 19 ASN B 80 SER B 97 1 18 HELIX 20 20 ASN B 104 VAL B 113 1 10 HELIX 21 21 ILE B 115 ILE B 144 1 30 HELIX 22 22 ASP B 146 GLU B 158 1 13 HELIX 23 23 ILE B 160 ILE B 174 1 15 HELIX 24 24 SER B 179 ILE B 193 1 15 HELIX 25 25 PHE B 195 GLN B 208 1 14 HELIX 26 26 LEU B 211 SER B 237 1 27 HELIX 27 27 PRO B 244 CYS B 264 1 21 HELIX 28 28 ASN B 275 GLY B 295 1 21 SSBOND 1 CYS A 264 CYS A 269 1555 1555 2.05 SSBOND 2 CYS B 264 CYS B 269 1555 1555 2.05 LINK OE1 GLU A 191 FE FE A1000 1555 1555 2.71 LINK OE1 GLU A 225 FE FE A1000 1555 1555 2.28 LINK ND1 HIS A 228 FE FE A1000 1555 1555 2.41 LINK OE2 GLU B 129 FE FE B1001 1555 1555 2.58 LINK OE1 GLU B 191 FE FE B1001 1555 1555 2.24 LINK OE2 GLU B 225 FE FE B1001 1555 1555 2.08 LINK ND1 HIS B 228 FE FE B1001 1555 1555 2.35 CISPEP 1 TYR A 43 PRO A 44 0 6.46 CISPEP 2 TYR B 43 PRO B 44 0 8.37 SITE 1 AC1 5 GLN A 125 GLU A 129 GLU A 191 GLU A 225 SITE 2 AC1 5 HIS A 228 SITE 1 AC2 4 GLU B 129 GLU B 191 GLU B 225 HIS B 228 SITE 1 AC3 4 TYR A 47 PRO A 48 ASP A 49 VAL A 50 SITE 1 AC4 4 SER A 133 GLU A 134 SER A 137 LYS B 120 CRYST1 76.151 79.978 103.846 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013132 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012503 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009630 0.00000